Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0000627

Physical Location & Seq

Genomic Coordinates Reverse (-)

11471311 .. 11472199

Gene Structure 889 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGATCAGATTGATGAATCCCTTAAGAAACAAATTGCAGCATTGTTGAGAGTTATACATGTGACAAGATGCTCTAAAGAGGACAATGTTCCGTGCCAAATTGAAGAGGGTCTGTTCTTGGGTTCTATTGGAGCTGCAAATAACAAGGAGGAACTGAAAAACTTGAACATCACACACATTTTGACCGTGGCTAATTCTTTGGCACCTGCATATCCAAATGATTTTGTGTATAAGGTTATAAATGTTGCGGACAGAGTCTGCACAGATTTAAAACAGCACTTCGATGAGTGCATCGATTATATTGATGAAGCTAAAAGATCGGGTGGTGGTGTGTTGGTTCATTGCTTTGTGGGAAGATCCAGAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0005488 GO:0005515 GO:0005516 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008138 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04360 ko04810 map04360 map04810

Pfam Domains

Protein Families

DSPc

Protein Analysis

123

Amino Acids

13.63

Weight (kDa)

6.06

Isoelectric Point (pI)

60.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DSPc	PF00782	38 - 121	1.4e-13	Dual specificity phosphatase, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06110 AT3G06110 AT3G06110 AT3G23610 AT3G23610 AT3G23610 AT3G23610 AT3G23610 AT3G23610
fragaria_vesca	FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14540 FvH4_4g14580 FvH4_4g14580 FvH4_4g14700
malus_domestica	MD16G1184700.v1.1
prunus_persica	Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1 Prupe.1G151900_v2.0.a1
pyrus_communis	pycom13g15890 pycom16g15510
rosa_chinensis	RchiOBHm_Chr4g0396121 RchiOBHm_Chr4g0418191 RchiOBHm_Chr4g0418241 RchiOBHm_Chr4g0418281 RchiOBHm_Chr7g0218781
rosa_laevigata	RLG00000007880 RLG00000007884 RLG00000009570
rosa_multiflora	Rmu_co8157318.1_g000001 Rmu_sc0000032.1_g000004 Rmu_sc0000032.1_g000006 Rmu_sc0000408.1_g000002 Rmu_sc0006325.1_g000026 Rmu_sc0009634.1_g000005
rosa_roxburghii	Rroxscaffold_5G00340920 Rroxscaffold_5G00361410 Rroxscaffold_5G00361430 Rroxscaffold_5G00361460
rosa_rugosa	Rorug01G0235100 Rorug03G0352200.1 Rorug04G0150700 Rorug04G0151000 Rorug04G0151300 Rorug04G0151700 Rorug04G0151800 Rorug07G0049500
rosa_samantha	Rh2BG097600 Rh2CG099500 Rh2DG096900 Rh4AG213100 Rh4AG213300 Rh4BG064600 Rh4BG217300 Rh4BG217600 Rh4BG217700 Rh4CG071200 Rh4CG224400 Rh4CG224700 Rh4CG225000 Rh4DG061500 Rh4DG211300 Rh4DG211500 Rh4DG211900 Rh5AG356200 Rh6DG255000 Rh7AG321200 Rh7CG337700 Rh7DG282300
rosa_wichuraiana	Rw4G018090 Rw4G018120 Rw6G006740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	239
AarI	CACCTGC	1 cut(s)	214
Acc36I	ACCTGC	1 cut(s)	214
AccB1I	GGYRCC	1 cut(s)	202
AciI	CCGC	1 cut(s)	248
AclWI	GGATC	2 cut(s)	12, 351
AflII	CTTAAG	1 cut(s)	23
AflIII	ACRYGT	1 cut(s)	58
AgsI	TTSAA	2 cut(s)	104, 166
AluBI	AGCT	2 cut(s)	134, 311
AluI	AGCT	2 cut(s)	134, 311
AlwI	GGATC	2 cut(s)	12, 351
AlwNI	CAGNNNCTG	1 cut(s)	258
ApeKI	GCWGC	2 cut(s)	38, 134
BanI	GGYRCC	1 cut(s)	202
BbvI	GCAGC	2 cut(s)	50, 121
BfrI	CTTAAG	1 cut(s)	23
BfuAI	ACCTGC	1 cut(s)	214
BisI	GCNGC	2 cut(s)	39, 135
BlsI	GCNGC	2 cut(s)	40, 136
BmiI	GGNNCC	1 cut(s)	204
BmsI	GCATC	2 cut(s)	59, 300
Bsa29I	ATCGAT	1 cut(s)	294
BsaJI	CCNNGG	1 cut(s)	186
Bse3DI	GCAATG	1 cut(s)	340
BseCI	ATCGAT	1 cut(s)	294
BseDI	CCNNGG	1 cut(s)	186
BseMI	GCAATG	1 cut(s)	340
BseXI	GCAGC	2 cut(s)	50, 121
BsgI	GTGCAG	1 cut(s)	244
BshNI	GGYRCC	1 cut(s)	202
BshVI	ATCGAT	1 cut(s)	294
Bsp143I	GATC	3 cut(s)	4, 317, 356
BspACI	CCGC	1 cut(s)	248
BspDI	ATCGAT	1 cut(s)	294
BspLI	GGNNCC	1 cut(s)	204
BspMI	ACCTGC	1 cut(s)	214
BspPI	GGATC	2 cut(s)	12, 351
BspT107I	GGYRCC	1 cut(s)	202
BspTI	CTTAAG	1 cut(s)	23
BsrDI	GCAATG	1 cut(s)	340
BssECI	CCNNGG	1 cut(s)	186
BssMI	GATC	3 cut(s)	4, 317, 356
Bst4CI	ACNGT	1 cut(s)	187
Bst6I	CTCTTC	1 cut(s)	99
BstAFI	CTTAAG	1 cut(s)	23
BstDSI	CCRYGG	1 cut(s)	186
BstKTI	GATC	3 cut(s)	7, 320, 359
BstMBI	GATC	3 cut(s)	4, 317, 356
BstNSI	RCATGY	1 cut(s)	62
BstV1I	GCAGC	2 cut(s)	50, 121
BstX2I	RGATCY	1 cut(s)	356
BstYI	RGATCY	1 cut(s)	356
Bsu15I	ATCGAT	1 cut(s)	294
BsuTUI	ATCGAT	1 cut(s)	294
BtgI	CCRYGG	1 cut(s)	186
BveI	ACCTGC	1 cut(s)	214
CaiI	CAGNNNCTG	1 cut(s)	258
ClaI	ATCGAT	1 cut(s)	294
CviAII	CATG	1 cut(s)	59
CviJI	RGCY	3 cut(s)	134, 191, 311
CviKI_1	RGCY	3 cut(s)	134, 191, 311
DpnI	GATC	3 cut(s)	6, 319, 358
DpnII	GATC	3 cut(s)	4, 317, 356
DraI	TTTAAA	1 cut(s)	270
Eam1104I	CTCTTC	1 cut(s)	99
EarI	CTCTTC	1 cut(s)	99
FaeI	CATG	1 cut(s)	62
FaiI	YATR	6 cut(s)	56, 60, 211, 231, 239, 300
FatI	CATG	1 cut(s)	58
Fnu4HI	GCNGC	2 cut(s)	39, 135
Fsp4HI	GCNGC	2 cut(s)	39, 135
GluI	GCNGC	2 cut(s)	39, 135
Hin1II	CATG	1 cut(s)	62
HinfI	GANTC	2 cut(s)	17, 255
Hpy188I	TCNGA	1 cut(s)	9
Hpy188III	TCNNGA	1 cut(s)	360
HpyAV	CCTTC	1 cut(s)	357
HpyCH4III	ACNGT	1 cut(s)	187
HpyCH4V	TGCA	5 cut(s)	38, 137, 209, 261, 291
Hsp92II	CATG	1 cut(s)	62
Kzo9I	GATC	3 cut(s)	4, 317, 356
LmnI	GCTCC	1 cut(s)	131
LpnPI	CCDG	1 cut(s)	219
Lsp1109I	GCAGC	2 cut(s)	50, 121
LweI	GCATC	2 cut(s)	59, 300
MaeIII	GTNAC	1 cut(s)	61
MalI	GATC	3 cut(s)	6, 319, 358
MboI	GATC	3 cut(s)	4, 317, 356
MboII	GAAGA	2 cut(s)	116, 366
MflI	RGATCY	1 cut(s)	356
MluCI	AATT	3 cut(s)	33, 99, 193
MlyI	GAGTC	1 cut(s)	264
MnlI	CCTC	3 cut(s)	73, 100, 142
MseI	TTAA	2 cut(s)	24, 269
MslI	CAYNNNNRTG	1 cut(s)	282
MspCI	CTTAAG	1 cut(s)	23
NdeII	GATC	3 cut(s)	4, 317, 356
NlaIII	CATG	1 cut(s)	62
NlaIV	GGNNCC	1 cut(s)	204
NmuCI	GTSAC	1 cut(s)	61
NspI	RCATGY	1 cut(s)	62
PaqCI	CACCTGC	1 cut(s)	214
PciI	ACATGT	1 cut(s)	58
PfeI	GAWTC	1 cut(s)	17
PflFI	GACNNNGTC	1 cut(s)	254
PkrI	GCNGC	2 cut(s)	40, 136
PleI	GAGTC	1 cut(s)	263
PpsI	GAGTC	1 cut(s)	263
PscI	ACATGT	1 cut(s)	58
PsiI	TTATAA	1 cut(s)	239
PspN4I	GGNNCC	1 cut(s)	204
PstNI	CAGNNNCTG	1 cut(s)	258
PsuI	RGATCY	1 cut(s)	356
PsyI	GACNNNGTC	1 cut(s)	254
RseI	CAYNNNNRTG	1 cut(s)	282
SaqAI	TTAA	2 cut(s)	24, 269
SatI	GCNGC	2 cut(s)	39, 135
Sau3AI	GATC	3 cut(s)	4, 317, 356
SchI	GAGTC	1 cut(s)	264
SetI	ASST	5 cut(s)	136, 208, 237, 313, 368
SfaNI	GCATC	2 cut(s)	59, 300
SgeI	CNNG	9 cut(s)	71, 78, 105, 130, 157, 175, 199, 218, 333
SmiMI	CAYNNNNRTG	1 cut(s)	282
SmlI	CTYRAG	1 cut(s)	23
SmoI	CTYRAG	1 cut(s)	23
Sse9I	AATT	3 cut(s)	33, 99, 193
SsiI	CCGC	1 cut(s)	248
TaaI	ACNGT	1 cut(s)	187
TaqI	TCGA	2 cut(s)	282, 294
TasI	AATT	3 cut(s)	33, 99, 193
TfiI	GAWTC	1 cut(s)	17
Tru1I	TTAA	2 cut(s)	24, 269
Tru9I	TTAA	2 cut(s)	24, 269
TseFI	GTSAC	1 cut(s)	61
TseI	GCWGC	2 cut(s)	38, 134
Tsp45I	GTSAC	1 cut(s)	61
TspDTI	ATGAA	3 cut(s)	30, 321, 329
TspGWI	ACGGA	1 cut(s)	81
Tth111I	GACNNNGTC	1 cut(s)	254
Vha464I	CTTAAG	1 cut(s)	23
XceI	RCATGY	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.