pycom17g15640

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Forward (+)
13686045 .. 13689657
3613 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 3285 bp
ATGGCTGCAGAAGCAACCAAACCTAGCAGCATCTTAAAATACAAAATAGTCACTTTCATATATATATATATATATATATATATATATAATTTCTTGTGGATAAGAAGTCAAAGAATTGGATATTTGAAATTTGAGTCATTTTCTAGGAAATTTCTCAAAATCCTGTCGCTGTTACTTGTTCAATTCAGTTACTTGAATTACAAGGCATCTGCAAATTTTTGTGAATATTTATATGTTGCCCCTGACTTGTATAACTCCATAGATTTGGAACTGGGAAAATCAGTTGAGGAAGAAAGGTTTCTGCTCGACAAGGTTGCACCTCTTTTCGAAAATGATCTGCAACTTTTGGGAGGGGTTAGGGAAGAAATTGTGTATCTGAGAGGGGAACTGGAGCGCATGACCGCGTTTCTGAGGGTTGCTGATGCATTTGAAGAGAGTGATGAGGAAGTCAAAGTATGGGTTAATCAAGTACGAGACATTGCTCACGATAGTGAAGATGTGCTGGATGAATTTACACTTATCCAGGCACATGATCATGGGACGGGGTTATATGGTTCCTTCCATAAGTTTTCGTGTTGTATTAAGAACATGAAAGCTCAATACCGAGTTGCTGCTGAGTTACAAGACATCAACAAGACAATCAGAAAAGTCTCGGAGGTTCATAGGAGACTCCGTCACAAGTTTAATATGGCTGAACAAGGGTCAAGCTCTTCAACTGCAAGTCAAATGTGGGAGGACCATCGTGGTAATGCTCTACTTTTAGAGAAAACTGATATAGTTGGCATTGACGAGCCCATAAAACAGATGGTAGGGTGGCTTGTCAACGGTGGTTCTGGACGAGAAGTAGTTTCTGTGGCTGGCATGGGAGGACTGGGGAAGACAACCCTGGCAAAGCAAGTCTATGATGCAGCAGAAGTGAAGAAGCATTTCAAAGTAAGTGCTTGGATCACGGTTACTCAGGCTTTCAAACTTGGGGAACTCCTCGAAGACATGATCCAACAACTCCACAAAGCCATCCGAAGGCCAGCTCCGCAAGGAACCAACAACATGAACAACAATCAGCTGAAAACAATAATCAAGGACTTCCTGCAGAAAAGGAGGTACCTAATTGTTCTCGATGATGTGTGGCACTTGTACGTATGGGACTCTCTGAAGTATGCGTTGCCTAACAATACTTGTGGCAGCCGAGTCATACTAACTACTCGAAAAGCTGATGTAGCCTCAACAACCAGCAAAGAATCTGGAGGTAGAGTCTTTAATTTGAAGCCTTTGCCTCTGTTGGAATCATGGGAGCTTCTACGCAAGAAGACATTCCAAGGGAACTCATGCCCTCCTTATTTAGAGGATATCGGTAATTCTATCTTAAGAAAGTGCGAGGGGCTGCCCCTCGCAATTGTGGCGGTCAGCGGTATTTTGGCTACCAAAGACAAGCGGAGGATCGACCAGTGGGATATGGTTGGCCATAGCCTTGTACTTTTGCTCAGCTTTAATGACTTGCCTTACCATCTCAAGTCTTGCTTCTTGTACCTGAGCATCTTGCCTGAGGATCATCTAATCGAGCATATGAGACTTGTTCGGTTATGGATGGCAGAGGGTTTTATTGAAGCGAAACAAGGCAAAACACTAGAAGATGTTGCAGAGGACTACCTCAATGAACTGTTGAATAGAAGCATGATTCAAGCGGCAGAGACAACATCCGATGGAAGGGTCAAAAGCTTTCGTGTCCATGATCTTCTCCGAGAGATCATCACCTCTAAGATAAGAGATCAGAACTTTGCCACAATAGCTAAAGAGCAAAACATACCATGGCCTGATAAAGTCCGACGCCTGTCAATGCATAATTCTTTGCAATACGTACAGAAAAACAGGTGCGCTTCTCAACTACGTTCTCTGTTTATGTTTGGAGTTACCGAGAAGCCAGTACTGCATACAATTTTTCCTGGAGGTTTTAGGCTTCTTAACGTGTTAGATTTGCAAGGCGCACCTCTAAATGCTTTTCCAGTTGAAGTTGTCAACCTTTTCTTTTTGAAGTATCTAAGCTTGAAAGGTACGAGGGTGAAAACCATTCCGAGATTTATAGGGAAGCTTCAGAACCTGGAGACTTTGGATTTGAAGCATTCTCTGGTCACTGAACTCCCAATTGAAATTTTGAAGCTTCAACATCTACGTCATCTTTTAGTATATCGTTATGAATTTGTACCATATGGAGATTTTCACTCAAAATATGGCTTTAAGGTGCTTGCAAAAATAGGGGCTCTAACTTGCCTTCAAAAGCTTTGTTTCATCAAGGCAAACCAAGATGGAGGTGCCATATTAAGAGAGCTGGGGAAACTAATTCAGTTGAGACGGTTAGGCATTGTGCATATGAGGAAACAAGACGGAAAGTCTCTTTGTTCATCCCTTGAAAAGCTGACCAAACTTTGCGCGTTGTCCATAACTTCAATAGAAGAGGATGAGATCATTGACCTGCAGCACATTTCTTCTCCTCCTCTACTACTTCAGCGCTTATACTTGCGTGGACGATTGGAAACATTGCCTCACTGGATACCTTCTCTGCACAGCCTTGTTAGATTATATCTGAAATGGAGTAGGTTAAGGGACAATCCGCTTGTATTCATTCAGTATCTGCCGAACCTAGTGCATCTCGAATTATCTCAGGTGTTTGAAGGAGACACATTGTGTTTCGGAGCTGGAGGATTTAAGAAGCTAAAACATTTAGGCATTGATGAATTTGATGAACTTAGATGTATAGAGGTGCAGGTGGGAGCAATGCCGTCCCTGCAAAAGCTAAGTATCCAGCGATGTAAATCGTTAGAGAAGGTGCCATCCGGGATTGAACACCTGAAGAAGCTGAAGGTGCTGGAATTCTTTGATATGCCGGAAAAGTTAATCAAGACGCTGAGTCCACATGAACAAGGCAACGATTATGGGAAGGTTGCGCATATCCCAGAAGTTTATTTCACCTACTTGAGAGAGTCAGGGTGGGAGGTCTACCCTTTGGAGGGTCTGAATGAAGGAGAAAATTTTCCTCAAACCACTTCTCTCATGAAGAGCCACGAACTCGAAACTCGTTGGAAGAGATGCTGCATATTAATAATCTTGATCAGTTTGATATTTATGTATCTTTGTAAACTGTCAAGTGAAATACAGAAGCTTTCTTATCTTCTTCTTCAAGCTTTCGTTTCTTTCGTGCTTTTCTCGTCTTCTTTGATAACCGATTCGGAATTTCGAAAGGGATTCCAAGAGAGAACAAGAGTTAGGTTTCAAGGTATAGAGGAATTTTAG

Protein Analysis

1095

Amino Acids

125.91

Weight (kDa)

8.84

Isoelectric Point (pI)

40.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 100 - 179 1.3e-21 Rx N-terminal domain
NB-ARC PF00931 264 - 442 1.5e-41 NB-ARC domain
WHD_DRP PF23559 512 - 583 3.5e-25 Disease resistance protein Winged helix domain
LRR_14 PF23598 627 - 955 3.8e-49 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 2749
Acc16I TGCGCA 1 cut(s) 2940
Acc36I ACCTGC 2 cut(s) 2475, 2749
Acc65I GGTACC 1 cut(s) 1101
AccB1I GGYRCC 3 cut(s) 1101, 2306, 2821
AccI GTMKAC 1 cut(s) 2991
AccII CGCG 2 cut(s) 404, 2426
AciI CCGC 7 cut(s) 402, 1031, 1400, 1407, 1432, 1682, 2606
AclWI GGATC 4 cut(s) 953, 988, 1445, 1554
AcoI YGGCCR 1 cut(s) 1459
AcuI CTGAAG 5 cut(s) 1172, 2072, 2483, 2864, 2873
AcyI GRCGYC 1 cut(s) 1825
AdeI CACNNNGTG 1 cut(s) 2679
AfaI GTAC 9 cut(s) 471, 1103, 1136, 1473, 1526, 1857, 1923, 2050, 2199
AfeI AGCGCT 1 cut(s) 2504
AfiI CCNNNNNNNGG 4 cut(s) 1020, 1704, 3001, 3002
AflII CTTAAG 1 cut(s) 1363
AflIII ACRYGT 1 cut(s) 1962
AhdI GACNNNNNGTC 2 cut(s) 2383, 2901
AjnI CCWGG 4 cut(s) 522, 885, 1939, 2094
AleI CACNNNNGTG 1 cut(s) 489
Alw26I GTCTC 9 cut(s) 468, 655, 661, 1561, 1682, 2093, 2338, 2391, 2664
AlwI GGATC 4 cut(s) 953, 988, 1445, 1554
AlwNI CAGNNNCTG 2 cut(s) 2095, 2626
Aor51HI AGCGCT 1 cut(s) 2504
AoxI GGCC 3 cut(s) 1022, 1459, 1808
ApeKI GCWGC 8 cut(s) 5, 27, 611, 908, 1182, 1381, 2470, 3084
ArsI GACNNNNNNTTYG 2 cut(s) 2092, 2124
AseI ATTAAT 1 cut(s) 3092
Asp700I GAANNNNTTC 4 cut(s) 297, 926, 1310, 3024
Asp718I GGTACC 1 cut(s) 1101
AspLEI GCGC 6 cut(s) 396, 1874, 1982, 2426, 2505, 2941
AspS9I GGNCC 1 cut(s) 736
AsuC2I CCSGG 1 cut(s) 2830
AsuHPI GGTGA 3 cut(s) 1741, 2068, 2953
AsuII TTCGAA 2 cut(s) 327, 3229
AvaII GGWCC 1 cut(s) 736
AxyI CCTNAGG 1 cut(s) 1542
BaeI ACNNNNGTAYC 2 cut(s) 2040, 2073
BalI TGGCCA 1 cut(s) 1461
BanI GGYRCC 3 cut(s) 1101, 2306, 2821
BanII GRGCYC 2 cut(s) 795, 2257
BbsI GAAGAC 4 cut(s) 884, 993, 1313, 3195
BbvI GCAGC 7 cut(s) 39, 598, 920, 1194, 1368, 2482, 3071
BccI CCATC 8 cut(s) 747, 799, 1022, 1512, 1579, 1694, 2294, 2833
BceAI ACGGC 1 cut(s) 2758
BcgI CGANNNNNNTGC 4 cut(s) 296, 330, 2620, 2654
BciT130I CCWGG 4 cut(s) 524, 887, 1941, 2096
BciVI GTATCC 2 cut(s) 2538, 2804
BclI TGATCA 2 cut(s) 532, 3102
BcnI CCSGG 1 cut(s) 2830
BcoDI GTCTC 9 cut(s) 468, 655, 661, 1561, 1682, 2093, 2338, 2391, 2664
BfaI CTAG 4 cut(s) 24, 144, 1625, 2636
BfmI CTRYAG 3 cut(s) 6, 1088, 2468
BfoI RGCGCY 1 cut(s) 2506
BfrI CTTAAG 1 cut(s) 1363
BfuAI ACCTGC 2 cut(s) 2475, 2749
BfuI GTATCC 2 cut(s) 2538, 2804
BisI GCNGC 9 cut(s) 6, 28, 612, 909, 1183, 1382, 1683, 2471, 3085
BlpI GCTNAGC 1 cut(s) 1481
BlsI GCNGC 9 cut(s) 7, 29, 613, 910, 1184, 1383, 1684, 2472, 3086
BmcAI AGTACT 1 cut(s) 1923
Bme1390I CCNGG 5 cut(s) 524, 887, 1941, 2096, 2830
Bme18I GGWCC 1 cut(s) 736
BmeRI GACNNNNNGTC 2 cut(s) 2383, 2901
BmgT120I GGNCC 1 cut(s) 736
BmiI GGNNCC 5 cut(s) 556, 1039, 1103, 2308, 2823
BmrFI CCNGG 5 cut(s) 524, 887, 1941, 2096, 2830
BmrI ACTGGG 2 cut(s) 281, 881
BmsI GCATC 7 cut(s) 39, 215, 412, 895, 1542, 2650, 3071
BmuI ACTGGG 2 cut(s) 281, 881
BoxI GACNNNNGTC 1 cut(s) 1828
BpiI GAAGAC 4 cut(s) 884, 993, 1313, 3195
BpmI CTGGAG 5 cut(s) 410, 1263, 1962, 2117, 2712
Bpu10I CCTNAGC 1 cut(s) 1529
Bpu1102I GCTNAGC 1 cut(s) 1481
Bpu14I TTCGAA 2 cut(s) 327, 3229
BpuEI CTTGAG 2 cut(s) 1493, 2989
BpuMI CCSGG 1 cut(s) 2830
BsaAI YACGTR 2 cut(s) 1138, 1855
BsaBI GATNNNNATC 1 cut(s) 2806
BsaHI GRCGYC 1 cut(s) 1825
BsaJI CCNNGG 3 cut(s) 885, 1315, 1805
BsaXI ACNNNNNCTCC 4 cut(s) 658, 688, 1236, 1266
Bsc4I CCNNNNNNNGG 4 cut(s) 1020, 1704, 3001, 3002
Bse1I ACTGG 7 cut(s) 276, 393, 876, 1444, 1919, 2000, 2546
Bse21I CCTNAGG 1 cut(s) 1542
Bse3DI GCAATG 3 cut(s) 477, 2531, 2775
Bse8I GATNNNNATC 1 cut(s) 2806
BseBI CCWGG 4 cut(s) 524, 887, 1941, 2096
BseDI CCNNGG 3 cut(s) 885, 1315, 1805
BseGI GGATG 7 cut(s) 511, 1014, 1590, 1694, 2396, 2458, 2825
BseJI GATNNNNATC 1 cut(s) 2806
BseLI CCNNNNNNNGG 4 cut(s) 1020, 1704, 3001, 3002
BseMI GCAATG 3 cut(s) 477, 2531, 2775
BseMII CTCAG 9 cut(s) 368, 401, 606, 971, 1495, 1520, 1533, 2669, 2891
BseNI ACTGG 7 cut(s) 276, 393, 876, 1444, 1919, 2000, 2546
BseRI GAGGAG 3 cut(s) 971, 2475, 2478
BseXI GCAGC 7 cut(s) 39, 598, 920, 1194, 1368, 2482, 3071
BseYI CCCAGC 1 cut(s) 2323
BsgI GTGCAG 2 cut(s) 2540, 2777
Bsh1236I CGCG 2 cut(s) 404, 2426
BshFI GGCC 3 cut(s) 1024, 1461, 1810
BshNI GGYRCC 3 cut(s) 1101, 2306, 2821
BsiSI CCGG 2 cut(s) 2829, 2879
BslFI GGGAC 4 cut(s) 553, 1157, 2612, 2761
BslI CCNNNNNNNGG 4 cut(s) 1020, 1704, 3001, 3002
BsmAI GTCTC 9 cut(s) 468, 655, 661, 1561, 1682, 2093, 2338, 2391, 2664
BsmBI CGTCTC 1 cut(s) 2338
BsmFI GGGAC 4 cut(s) 553, 1157, 2612, 2761
BsmI GAATGC 1 cut(s) 2116
BsnI GGCC 3 cut(s) 1024, 1461, 1810
Bsp119I TTCGAA 2 cut(s) 327, 3229
Bsp1286I GDGCHC 2 cut(s) 795, 2257
Bsp1720I GCTNAGC 1 cut(s) 1481
Bsp19I CCATGG 1 cut(s) 1805
BspACI CCGC 7 cut(s) 402, 1031, 1400, 1407, 1432, 1682, 2606
BspANI GGCC 3 cut(s) 1024, 1461, 1810
BspCNI CTCAG 9 cut(s) 369, 402, 607, 970, 1494, 1521, 1534, 2668, 2892
BspFNI CGCG 2 cut(s) 404, 2426
BspHI TCATGA 1 cut(s) 3045
BspLI GGNNCC 5 cut(s) 556, 1039, 1103, 2308, 2823
BspMAI CTGCAG 3 cut(s) 10, 1092, 2472
BspMI ACCTGC 2 cut(s) 2475, 2749
BspPI GGATC 4 cut(s) 953, 988, 1445, 1554
BspQI GCTCTTC 2 cut(s) 715, 3044
BspT104I TTCGAA 2 cut(s) 327, 3229
BspT107I GGYRCC 3 cut(s) 1101, 2306, 2821
BspTI CTTAAG 1 cut(s) 1363
BsrDI GCAATG 3 cut(s) 477, 2531, 2775
BsrI ACTGG 7 cut(s) 276, 393, 876, 1444, 1919, 2000, 2546
BssECI CCNNGG 3 cut(s) 885, 1315, 1805
BssNI GRCGYC 1 cut(s) 1825
BssT1I CCWWGG 2 cut(s) 1315, 1805
Bst2UI CCWGG 4 cut(s) 524, 887, 1941, 2096
Bst4CI ACNGT 5 cut(s) 827, 952, 1659, 2349, 3135
Bst6I CTCTTC 5 cut(s) 426, 715, 2442, 3044, 3071
BstACI GRCGYC 1 cut(s) 1825
BstAFI CTTAAG 1 cut(s) 1363
BstBAI YACGTR 2 cut(s) 1138, 1855
BstBI TTCGAA 2 cut(s) 327, 3229
BstC8I GCNNGC 3 cut(s) 859, 1026, 2241
BstDSI CCRYGG 1 cut(s) 1805
BstF5I GGATG 7 cut(s) 511, 1014, 1590, 1694, 2396, 2458, 2825
BstFNI CGCG 2 cut(s) 404, 2426
BstH2I RGCGCY 1 cut(s) 2506
BstHHI GCGC 6 cut(s) 396, 1874, 1982, 2426, 2505, 2941
BstMAI GTCTC 9 cut(s) 468, 655, 661, 1561, 1682, 2093, 2338, 2391, 2664
BstMWI GCNNNNNNNGC 8 cut(s) 11, 1030, 1217, 1397, 1784, 1924, 2779, 2857
BstNI CCWGG 4 cut(s) 524, 887, 1941, 2096
BstPAI GACNNNNGTC 1 cut(s) 1828
BstSCI CCNGG 5 cut(s) 522, 885, 1939, 2094, 2828
BstSFI CTRYAG 3 cut(s) 6, 1088, 2468
BstSNI TACGTA 2 cut(s) 1138, 1855
BstUI CGCG 2 cut(s) 404, 2426
BstV1I GCAGC 7 cut(s) 39, 598, 920, 1194, 1368, 2482, 3071
BstV2I GAAGAC 4 cut(s) 884, 993, 1313, 3195
BstXI CCANNNNNNTGG 1 cut(s) 265
Bsu36I CCTNAGG 1 cut(s) 1542
BsuI GTATCC 2 cut(s) 2538, 2804
BsuRI GGCC 3 cut(s) 1024, 1461, 1810
BtgI CCRYGG 1 cut(s) 1805
BtgZI GCGATG 1 cut(s) 2815
BtsCI GGATG 7 cut(s) 511, 1014, 1590, 1694, 2396, 2458, 2825
BtsIMutI CAGTG 3 cut(s) 1451, 2127, 2539
BveI ACCTGC 2 cut(s) 2475, 2749
Cac8I GCNNGC 3 cut(s) 859, 1026, 2241
CaiI CAGNNNCTG 2 cut(s) 2095, 2626
CciI TCATGA 1 cut(s) 3045
CfoI GCGC 6 cut(s) 396, 1874, 1982, 2426, 2505, 2941
Cfr13I GGNCC 1 cut(s) 736
CseI GACGC 2 cut(s) 1833, 2905
Csp6I GTAC 9 cut(s) 470, 1102, 1135, 1472, 1525, 1856, 1922, 2049, 2198
CspCI CAANNNNNGTGG 2 cut(s) 1159, 1194
CviQI GTAC 9 cut(s) 470, 1102, 1135, 1472, 1525, 1856, 1922, 2049, 2198
DraIII CACNNNGTG 1 cut(s) 2679
DriI GACNNNNNGTC 2 cut(s) 2383, 2901
EaeI YGGCCR 1 cut(s) 1459
Eam1104I CTCTTC 5 cut(s) 426, 715, 2442, 3044, 3071
Eam1105I GACNNNNNGTC 2 cut(s) 2383, 2901
EarI CTCTTC 5 cut(s) 426, 715, 2442, 3044, 3071
Eco105I TACGTA 2 cut(s) 1138, 1855
Eco130I CCWWGG 2 cut(s) 1315, 1805
Eco24I GRGCYC 2 cut(s) 795, 2257
Eco32I GATATC 1 cut(s) 1348
Eco47I GGWCC 1 cut(s) 736
Eco47III AGCGCT 1 cut(s) 2504
Eco57I CTGAAG 5 cut(s) 1172, 2072, 2483, 2864, 2873
Eco81I CCTNAGG 1 cut(s) 1542
EcoRI GAATTC 1 cut(s) 2864
EcoRII CCWGG 4 cut(s) 522, 885, 1939, 2094
EcoRV GATATC 1 cut(s) 1348
EcoT14I CCWWGG 2 cut(s) 1315, 1805
EcoT22I ATGCAT 2 cut(s) 427, 1839
EcoT38I GRGCYC 2 cut(s) 795, 2257
ErhI CCWWGG 2 cut(s) 1315, 1805
Esp3I CGTCTC 1 cut(s) 2338
FalI AAGNNNNNCTT 2 cut(s) 1502, 1534
FaqI GGGAC 4 cut(s) 553, 1157, 2612, 2761
FauNDI CATATG 3 cut(s) 1563, 2203, 2364
FbaI TGATCA 2 cut(s) 532, 3102
FblI GTMKAC 1 cut(s) 2991
Fnu4HI GCNGC 9 cut(s) 6, 28, 612, 909, 1183, 1382, 1683, 2471, 3085
FokI GGATG 7 cut(s) 518, 1001, 1597, 1681, 2383, 2465, 2812
FriOI GRGCYC 2 cut(s) 795, 2257
Fsp4HI GCNGC 9 cut(s) 6, 28, 612, 909, 1183, 1382, 1683, 2471, 3085
FspBI CTAG 4 cut(s) 24, 144, 1625, 2636
FspI TGCGCA 1 cut(s) 2940
GlaI GCGC 6 cut(s) 395, 1873, 1981, 2425, 2504, 2940
GluI GCNGC 9 cut(s) 6, 28, 612, 909, 1183, 1382, 1683, 2471, 3085
GsaI CCCAGC 1 cut(s) 2327
GsuI CTGGAG 5 cut(s) 410, 1263, 1962, 2117, 2712
HaeII RGCGCY 1 cut(s) 2506
HaeIII GGCC 3 cut(s) 1024, 1461, 1810
HapII CCGG 2 cut(s) 2829, 2879
HgaI GACGC 2 cut(s) 1833, 2905
HhaI GCGC 6 cut(s) 396, 1874, 1982, 2426, 2505, 2941
Hin1I GRCGYC 1 cut(s) 1825
Hin6I GCGC 6 cut(s) 394, 1872, 1980, 2424, 2503, 2939
HinP1I GCGC 6 cut(s) 394, 1872, 1980, 2424, 2503, 2939
HincII GTYRAC 2 cut(s) 823, 2014
HindII GTYRAC 2 cut(s) 823, 2014
HindIII AAGCTT 7 cut(s) 1714, 2038, 2084, 2153, 2273, 3152, 3174
HpaII CCGG 2 cut(s) 2829, 2879
HphI GGTGA 3 cut(s) 1741, 2068, 2953
Hpy166II GTNNAC 6 cut(s) 823, 2014, 2519, 2906, 2992, 3131
Hpy188III TCNNGA 8 cut(s) 485, 834, 1115, 1242, 2645, 2893, 3046, 3100
Hpy8I GTNNAC 6 cut(s) 823, 2014, 2519, 2906, 2992, 3131
Hpy99I CGWCG 1 cut(s) 1827
HpyCH4III ACNGT 5 cut(s) 827, 952, 1659, 2349, 3135
HpyCH4IV ACGT 5 cut(s) 1137, 1854, 1885, 1962, 2167
HpyF10VI GCNNNNNNNGC 8 cut(s) 11, 1030, 1217, 1397, 1784, 1924, 2779, 2857
HpySE526I ACGT 5 cut(s) 1137, 1854, 1885, 1962, 2167
Hsp92I GRCGYC 1 cut(s) 1825
HspAI GCGC 6 cut(s) 394, 1872, 1980, 2424, 2503, 2939
KpnI GGTACC 1 cut(s) 1105
Ksp22I TGATCA 2 cut(s) 532, 3102
LguI GCTCTTC 2 cut(s) 715, 3044
LmnI GCTCC 5 cut(s) 391, 1033, 1291, 2687, 2765
Lsp1109I GCAGC 7 cut(s) 39, 598, 920, 1194, 1368, 2482, 3071
LweI GCATC 7 cut(s) 39, 215, 412, 895, 1542, 2650, 3071
MaeI CTAG 4 cut(s) 24, 144, 1625, 2636
MaeII ACGT 5 cut(s) 1137, 1854, 1885, 1962, 2167
MaeIII GTNAC 8 cut(s) 49, 171, 188, 618, 674, 952, 1906, 2125
MfeI CAATTG 2 cut(s) 1392, 2139
MhlI GDGCHC 2 cut(s) 795, 2257
MlsI TGGCCA 1 cut(s) 1461
MluNI TGGCCA 1 cut(s) 1461
MlyI GAGTC 7 cut(s) 143, 663, 1139, 1197, 1260, 2911, 2984
MmeI TCCRAC 4 cut(s) 1021, 1260, 1846, 3053
Mox20I TGGCCA 1 cut(s) 1461
Mph1103I ATGCAT 2 cut(s) 427, 1839
MroXI GAANNNNTTC 4 cut(s) 297, 926, 1310, 3024
MscI TGGCCA 1 cut(s) 1461
MslI CAYNNNNRTG 2 cut(s) 489, 534
Msp20I TGGCCA 1 cut(s) 1461
MspA1I CMGCKG 2 cut(s) 1063, 1407
MspCI CTTAAG 1 cut(s) 1363
MspI CCGG 2 cut(s) 2829, 2879
MspR9I CCNGG 5 cut(s) 524, 887, 1941, 2096, 2830
MunI CAATTG 2 cut(s) 1392, 2139
Mva1269I GAATGC 1 cut(s) 2116
MvaI CCWGG 4 cut(s) 524, 887, 1941, 2096
MvnI CGCG 2 cut(s) 404, 2426
MwoI GCNNNNNNNGC 8 cut(s) 11, 1030, 1217, 1397, 1784, 1924, 2779, 2857
NciI CCSGG 1 cut(s) 2830
NcoI CCATGG 1 cut(s) 1805
NdeI CATATG 3 cut(s) 1563, 2203, 2364
NlaIV GGNNCC 5 cut(s) 556, 1039, 1103, 2308, 2823
NmeAIII GCCGAG 1 cut(s) 1211
NmuCI GTSAC 3 cut(s) 49, 674, 2125
NsbI TGCGCA 1 cut(s) 2940
NsiI ATGCAT 2 cut(s) 427, 1839
NspV TTCGAA 2 cut(s) 327, 3229
OliI CACNNNNGTG 1 cut(s) 489
PagI TCATGA 1 cut(s) 3045
PaqCI CACCTGC 1 cut(s) 2749
PciSI GCTCTTC 2 cut(s) 715, 3044
PcsI WCGNNNNNNNCGW 1 cut(s) 3186
PctI GAATGC 1 cut(s) 2116
PdmI GAANNNNTTC 4 cut(s) 297, 926, 1310, 3024
PfeI GAWTC 5 cut(s) 1238, 1283, 1675, 3218, 3237
PflFI GACNNNGTC 1 cut(s) 672
PfoI TCCNGGA 2 cut(s) 1939, 2828
PkrI GCNGC 9 cut(s) 7, 29, 613, 910, 1184, 1383, 1684, 2472, 3086
PleI GAGTC 7 cut(s) 142, 663, 1139, 1196, 1259, 2910, 2983
PpsI GAGTC 7 cut(s) 142, 663, 1139, 1196, 1259, 2910, 2983
Ppu21I YACGTR 2 cut(s) 1138, 1855
PshAI GACNNNNGTC 1 cut(s) 1828
PshBI ATTAAT 1 cut(s) 3092
Psp6I CCWGG 4 cut(s) 522, 885, 1939, 2094
PspFI CCCAGC 1 cut(s) 2323
PspGI CCWGG 4 cut(s) 522, 885, 1939, 2094
PspN4I GGNNCC 5 cut(s) 556, 1039, 1103, 2308, 2823
PspPI GGNCC 1 cut(s) 736
PstI CTGCAG 3 cut(s) 10, 1092, 2472
PstNI CAGNNNCTG 2 cut(s) 2095, 2626
PsyI GACNNNGTC 1 cut(s) 672
PvuII CAGCTG 1 cut(s) 1063
RsaI GTAC 9 cut(s) 471, 1103, 1136, 1473, 1526, 1857, 1923, 2050, 2199
RsaNI GTAC 9 cut(s) 470, 1102, 1135, 1472, 1525, 1856, 1922, 2049, 2198
RseI CAYNNNNRTG 2 cut(s) 489, 534
SapI GCTCTTC 2 cut(s) 715, 3044
SatI GCNGC 9 cut(s) 6, 28, 612, 909, 1183, 1382, 1683, 2471, 3085
Sau96I GGNCC 1 cut(s) 736
ScaI AGTACT 1 cut(s) 1923
SchI GAGTC 7 cut(s) 143, 663, 1139, 1197, 1260, 2911, 2984
ScrFI CCNGG 5 cut(s) 524, 887, 1941, 2096, 2830
SduI GDGCHC 2 cut(s) 795, 2257
SfaNI GCATC 7 cut(s) 39, 215, 412, 895, 1542, 2650, 3071
SfcI CTRYAG 3 cut(s) 6, 1088, 2468
SfuI TTCGAA 2 cut(s) 327, 3229
SinI GGWCC 1 cut(s) 736
SmiMI CAYNNNNRTG 2 cut(s) 489, 534
SmlI CTYRAG 3 cut(s) 1363, 1508, 2968
SmoI CTYRAG 3 cut(s) 1363, 1508, 2968
SnaBI TACGTA 2 cut(s) 1138, 1855
SsiI CCGC 7 cut(s) 402, 1031, 1400, 1407, 1432, 1682, 2606
SspI AATATT 1 cut(s) 227
SspMI CTAG 4 cut(s) 24, 144, 1625, 2636
StyD4I CCNGG 5 cut(s) 522, 885, 1939, 2094, 2828
StyI CCWWGG 2 cut(s) 1315, 1805
TaaI ACNGT 5 cut(s) 827, 952, 1659, 2349, 3135
TaiI ACGT 5 cut(s) 1140, 1857, 1888, 1965, 2170
TatI WGTACW 2 cut(s) 1471, 1921
TauI GCSGC 1 cut(s) 1685
TfiI GAWTC 5 cut(s) 1238, 1283, 1675, 3218, 3237
TscAI CASTG 3 cut(s) 1451, 2134, 2546
TseFI GTSAC 3 cut(s) 49, 674, 2125
TseI GCWGC 8 cut(s) 5, 27, 611, 908, 1182, 1381, 2470, 3084
Tsp45I GTSAC 3 cut(s) 49, 674, 2125
TspGWI ACGGA 2 cut(s) 662, 2394
TspRI CASTG 3 cut(s) 1451, 2134, 2546
Tth111I GACNNNGTC 1 cut(s) 672
Vha464I CTTAAG 1 cut(s) 1363
VpaK11BI GGWCC 1 cut(s) 736
VspI ATTAAT 1 cut(s) 3092
XcmI CCANNNNNNNNNTGG 1 cut(s) 802
XmiI GTMKAC 1 cut(s) 2991
XmnI GAANNNNTTC 4 cut(s) 297, 926, 1310, 3024
XspI CTAG 4 cut(s) 24, 144, 1625, 2636
ZrmI AGTACT 1 cut(s) 1923
Zsp2I ATGCAT 2 cut(s) 427, 1839
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.