Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000974

Physical Location & Seq

Genomic Coordinates Reverse (-)

2671211 .. 2671786

Gene Structure 576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGAAAACCATGAACATGATAGTTGTTGTTCTCGCAATGGCAGTAGTATTGTTACATGGAGCAGAAGCTGTACTATACACAGTTGGAGACGACTTGGGTTGGGCTATTCCTCCTGGTGGCGCTGCTACTTATGCTGCATGGGCTGCCGAGCATAGCTTTGTATTCGACTTTGCAGTAGGTGAACAAGACTTGGCCTTAGTAACCAAGGATGATTACGACAGTTGTAACACGGTGGATCCCTTGTTGCTATTCCAGGAGGCAGTTACACTTCAGTTTATCGCAAGCGACACATTTTATTTCACCTCCACCTTGGCCGGGCACTGCACCAAAGGCCAAAAGATTGCCATTTACATCGGCGCTGCCCTGCCTCCTAGTCCCAGTCCAACTCCATGTCCTTCTTCATCAAGTGCTGATGACGCCCTAACGGTAACGGCCAAATTTGTGTCTCACAAGATCATGGCCAAAGGAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

157

Amino Acids

16.55

Weight (kDa)

4.6

Isoelectric Point (pI)

33.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	42 - 112	2.5e-06	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000974)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02910 FvH4_1g02970 FvH4_6g40671
malus_domestica	MD02G1028900.v1.1 MD02G1029100.v1.1 MD15G1170500.v1.1
prunus_persica	Prupe.7G245800_v2.0.a1 Prupe.7G245900_v2.0.a1 Prupe.7G246100_v2.0.a1
pyrus_communis	pycom02g02370 pycom02g02380 pycom02g02390 pycom02g02400 pycom15g15200
rosa_chinensis	RchiOBHm_Chr2g0088061 RchiOBHm_Chr2g0088081 RchiOBHm_Chr2g0156091 RchiOBHm_Chr2g0156121 RchiOBHm_Chr2g0156131 RchiOBHm_Chr5g0060121 RchiOBHm_Chr5g0060181
rosa_multiflora	Rmu_co8398493.1_g000001 Rmu_sc0000260.1_g000020 Rmu_sc0000493.1_g000045 Rmu_sc0003275.1_g000013 Rmu_sc0003275.1_g000020 Rmu_sc0003275.1_g000042 Rmu_sc0011922.1_g000011
rosa_roxburghii	Rroxscaffold_1G00020520 Rroxscaffold_1G00020540 Rroxscaffold_2G00152970 Rroxscaffold_2G00152990 Rroxscaffold_2G00153000 Rroxscaffold_2G00153020
rosa_rugosa	Rorug01G0480500 Rorug01G0480600 Rorug01G0480800 Rorug02G0451600 Rorug02G0451600 Rorug05G0328200
rosa_samantha	Rh2AG035400 Rh2AG035700 Rh2BG034400 Rh2BG034600 Rh2BG034900 Rh2BG529600 Rh2CG035600 Rh2CG036000 Rh2CG503200 Rh2DG035100 Rh2DG035500 Rh5AG392000 Rh5AG392100 Rh5BG404500 Rh5BG404600 Rh5CG428200 Rh5CG428600 Rh5DG420300
rosa_wichuraiana	Rw2G002780 Rw2G002790 Rw2G002810 Rw5G036960 Rw5G036970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	230, 243
AcoI	YGGCCR	3 cut(s)	312, 432, 459
AcsI	RAATTY	1 cut(s)	437
AcuI	CTGAAG	1 cut(s)	254
AcyI	GRCGYC	1 cut(s)	417
AfaI	GTAC	1 cut(s)	72
AfiI	CCNNNNNNNGG	2 cut(s)	116, 315
AjnI	CCWGG	2 cut(s)	112, 252
AluBI	AGCT	2 cut(s)	68, 156
AluI	AGCT	2 cut(s)	68, 156
Alw26I	GTCTC	2 cut(s)	81, 450
AlwI	GGATC	2 cut(s)	230, 243
AlwNI	CAGNNNCTG	1 cut(s)	68
AoxI	GGCC	5 cut(s)	192, 312, 331, 432, 459
ApeKI	GCWGC	4 cut(s)	122, 134, 143, 359
ApoI	RAATTY	1 cut(s)	437
AspLEI	GCGC	2 cut(s)	122, 359
AsuC2I	CCSGG	1 cut(s)	316
AsuHPI	GGTGA	2 cut(s)	191, 292
BaeGI	GKGCMC	1 cut(s)	321
BalI	TGGCCA	1 cut(s)	461
BamHI	GGATCC	1 cut(s)	235
BbvI	GCAGC	4 cut(s)	109, 121, 130, 346
BceAI	ACGGC	1 cut(s)	447
BciT130I	CCWGG	2 cut(s)	114, 254
BcnI	CCSGG	1 cut(s)	316
BcoDI	GTCTC	2 cut(s)	81, 450
BfaI	CTAG	2 cut(s)	372, 472
BfoI	RGCGCY	2 cut(s)	123, 360
BisI	GCNGC	4 cut(s)	123, 135, 144, 360
BlsI	GCNGC	4 cut(s)	124, 136, 145, 361
Bme1390I	CCNGG	3 cut(s)	114, 254, 316
BmiI	GGNNCC	1 cut(s)	237
BmrFI	CCNGG	3 cut(s)	114, 254, 316
BmrI	ACTGGG	1 cut(s)	372
BmuI	ACTGGG	1 cut(s)	372
BpuMI	CCSGG	1 cut(s)	316
BsaHI	GRCGYC	1 cut(s)	417
BsaJI	CCNNGG	2 cut(s)	204, 309
Bsc4I	CCNNNNNNNGG	2 cut(s)	116, 315
Bse1I	ACTGG	1 cut(s)	378
Bse3DI	GCAATG	1 cut(s)	42
BseBI	CCWGG	2 cut(s)	114, 254
BseDI	CCNNGG	2 cut(s)	204, 309
BseGI	GGATG	1 cut(s)	214
BseLI	CCNNNNNNNGG	2 cut(s)	116, 315
BseMI	GCAATG	1 cut(s)	42
BseNI	ACTGG	1 cut(s)	378
BseSI	GKGCMC	1 cut(s)	321
BseXI	GCAGC	4 cut(s)	109, 121, 130, 346
BsgI	GTGCAG	1 cut(s)	307
BshFI	GGCC	5 cut(s)	194, 314, 333, 434, 461
BsiSI	CCGG	1 cut(s)	315
BslFI	GGGAC	1 cut(s)	360
BslI	CCNNNNNNNGG	2 cut(s)	116, 315
BsmAI	GTCTC	2 cut(s)	81, 450
BsmBI	CGTCTC	1 cut(s)	81
BsmFI	GGGAC	1 cut(s)	360
BsnI	GGCC	5 cut(s)	194, 314, 333, 434, 461
Bsp1286I	GDGCHC	1 cut(s)	321
Bsp143I	GATC	2 cut(s)	235, 453
BspANI	GGCC	5 cut(s)	194, 314, 333, 434, 461
BspLI	GGNNCC	1 cut(s)	237
BspPI	GGATC	2 cut(s)	230, 243
BsrDI	GCAATG	1 cut(s)	42
BsrI	ACTGG	1 cut(s)	378
BssECI	CCNNGG	2 cut(s)	204, 309
BssMI	GATC	2 cut(s)	235, 453
BssNI	GRCGYC	1 cut(s)	417
BssT1I	CCWWGG	2 cut(s)	204, 309
Bst2UI	CCWGG	2 cut(s)	114, 254
Bst4CI	ACNGT	4 cut(s)	82, 221, 232, 427
BstACI	GRCGYC	1 cut(s)	417
BstAPI	GCANNNNNTGC	1 cut(s)	143
BstC8I	GCNNGC	1 cut(s)	283
BstDEI	CTNAG	1 cut(s)	196
BstF5I	GGATG	1 cut(s)	214
BstH2I	RGCGCY	2 cut(s)	123, 360
BstHHI	GCGC	2 cut(s)	122, 359
BstKTI	GATC	2 cut(s)	238, 456
BstMAI	GTCTC	2 cut(s)	81, 450
BstMBI	GATC	2 cut(s)	235, 453
BstMWI	GCNNNNNNNGC	5 cut(s)	131, 140, 143, 330, 416
BstNI	CCWGG	2 cut(s)	114, 254
BstSCI	CCNGG	3 cut(s)	112, 252, 314
BstSLI	GKGCMC	1 cut(s)	321
BstV1I	GCAGC	4 cut(s)	109, 121, 130, 346
BstX2I	RGATCY	1 cut(s)	235
BstYI	RGATCY	1 cut(s)	235
BsuRI	GGCC	5 cut(s)	194, 314, 333, 434, 461
BtsCI	GGATG	1 cut(s)	214
BtsI	GCAGTG	1 cut(s)	319
BtsIMutI	CAGTG	1 cut(s)	319
Cac8I	GCNNGC	1 cut(s)	283
CaiI	CAGNNNCTG	1 cut(s)	68
CfoI	GCGC	2 cut(s)	122, 359
CseI	GACGC	1 cut(s)	425
Csp6I	GTAC	1 cut(s)	71
CviAII	CATG	6 cut(s)	10, 16, 56, 138, 390, 457
CviJI	RGCY	9 cut(s)	68, 104, 143, 156, 194, 314, 333, 434, 461
CviKI_1	RGCY	9 cut(s)	68, 104, 143, 156, 194, 314, 333, 434, 461
CviQI	GTAC	1 cut(s)	71
DdeI	CTNAG	1 cut(s)	196
DpnI	GATC	2 cut(s)	237, 455
DpnII	GATC	2 cut(s)	235, 453
EaeI	YGGCCR	3 cut(s)	312, 432, 459
Eco130I	CCWWGG	2 cut(s)	204, 309
Eco57I	CTGAAG	1 cut(s)	254
EcoRII	CCWGG	2 cut(s)	112, 252
EcoT14I	CCWWGG	2 cut(s)	204, 309
ErhI	CCWWGG	2 cut(s)	204, 309
Esp3I	CGTCTC	1 cut(s)	81
FaeI	CATG	6 cut(s)	13, 19, 59, 141, 393, 460
FaiI	YATR	9 cut(s)	11, 17, 57, 76, 132, 139, 153, 391, 458
FaqI	GGGAC	1 cut(s)	360
FatI	CATG	6 cut(s)	9, 15, 55, 137, 389, 456
Fnu4HI	GCNGC	4 cut(s)	123, 135, 144, 360
FokI	GGATG	1 cut(s)	221
Fsp4HI	GCNGC	4 cut(s)	123, 135, 144, 360
FspBI	CTAG	2 cut(s)	372, 472
GlaI	GCGC	2 cut(s)	121, 358
GluI	GCNGC	4 cut(s)	123, 135, 144, 360
HaeII	RGCGCY	2 cut(s)	123, 360
HaeIII	GGCC	5 cut(s)	194, 314, 333, 434, 461
HapII	CCGG	1 cut(s)	315
HgaI	GACGC	1 cut(s)	425
HhaI	GCGC	2 cut(s)	122, 359
Hin1I	GRCGYC	1 cut(s)	417
Hin1II	CATG	6 cut(s)	13, 19, 59, 141, 393, 460
Hin6I	GCGC	2 cut(s)	120, 357
HinP1I	GCGC	2 cut(s)	120, 357
HpaII	CCGG	1 cut(s)	315
HphI	GGTGA	2 cut(s)	191, 292
Hpy166II	GTNNAC	1 cut(s)	182
Hpy8I	GTNNAC	1 cut(s)	182
HpyAV	CCTTC	1 cut(s)	405
HpyCH4III	ACNGT	4 cut(s)	82, 221, 232, 427
HpyCH4V	TGCA	3 cut(s)	137, 173, 324
HpyF10VI	GCNNNNNNNGC	5 cut(s)	131, 140, 143, 330, 416
HpyF3I	CTNAG	1 cut(s)	196
Hsp92I	GRCGYC	1 cut(s)	417
Hsp92II	CATG	6 cut(s)	13, 19, 59, 141, 393, 460
HspAI	GCGC	2 cut(s)	120, 357
Kzo9I	GATC	2 cut(s)	235, 453
LmnI	GCTCC	1 cut(s)	59
LpnPI	CCDG	7 cut(s)	99, 126, 239, 266, 328, 377, 391
Lsp1109I	GCAGC	4 cut(s)	109, 121, 130, 346
MaeI	CTAG	2 cut(s)	372, 472
MaeIII	GTNAC	5 cut(s)	51, 199, 224, 262, 427
MalI	GATC	2 cut(s)	237, 455
MboI	GATC	2 cut(s)	235, 453
MboII	GAAGA	1 cut(s)	390
MflI	RGATCY	1 cut(s)	235
MhlI	GDGCHC	1 cut(s)	321
MlsI	TGGCCA	1 cut(s)	461
MluCI	AATT	1 cut(s)	437
MluNI	TGGCCA	1 cut(s)	461
MmeI	TCCRAC	2 cut(s)	64, 407
MnlI	CCTC	4 cut(s)	120, 250, 313, 378
Mox20I	TGGCCA	1 cut(s)	461
MscI	TGGCCA	1 cut(s)	461
MslI	CAYNNNNRTG	1 cut(s)	14
Msp20I	TGGCCA	1 cut(s)	461
MspI	CCGG	1 cut(s)	315
MspR9I	CCNGG	3 cut(s)	114, 254, 316
MvaI	CCWGG	2 cut(s)	114, 254
MwoI	GCNNNNNNNGC	5 cut(s)	131, 140, 143, 330, 416
NciI	CCSGG	1 cut(s)	316
NdeII	GATC	2 cut(s)	235, 453
NlaIII	CATG	6 cut(s)	13, 19, 59, 141, 393, 460
NlaIV	GGNNCC	1 cut(s)	237
NmeAIII	GCCGAG	1 cut(s)	172
PfoI	TCCNGGA	1 cut(s)	252
PkrI	GCNGC	4 cut(s)	124, 136, 145, 361
Psp6I	CCWGG	2 cut(s)	112, 252
PspGI	CCWGG	2 cut(s)	112, 252
PspN4I	GGNNCC	1 cut(s)	237
PstNI	CAGNNNCTG	1 cut(s)	68
PsuI	RGATCY	1 cut(s)	235
RsaI	GTAC	1 cut(s)	72
RsaNI	GTAC	1 cut(s)	71
RseI	CAYNNNNRTG	1 cut(s)	14
SatI	GCNGC	4 cut(s)	123, 135, 144, 360
Sau3AI	GATC	2 cut(s)	235, 453
ScrFI	CCNGG	3 cut(s)	114, 254, 316
SduI	GDGCHC	1 cut(s)	321
SetI	ASST	5 cut(s)	70, 158, 181, 305, 311
SmiMI	CAYNNNNRTG	1 cut(s)	14
Sse9I	AATT	1 cut(s)	437
SspMI	CTAG	2 cut(s)	372, 472
StyD4I	CCNGG	3 cut(s)	112, 252, 314
StyI	CCWWGG	2 cut(s)	204, 309
TaaI	ACNGT	4 cut(s)	82, 221, 232, 427
TaqI	TCGA	1 cut(s)	165
TasI	AATT	1 cut(s)	437
TatI	WGTACW	1 cut(s)	70
TscAI	CASTG	1 cut(s)	326
TseI	GCWGC	4 cut(s)	122, 134, 143, 359
TspDTI	ATGAA	3 cut(s)	17, 26, 390
TspRI	CASTG	1 cut(s)	326
XapI	RAATTY	1 cut(s)	437
XspI	CTAG	2 cut(s)	372, 472

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.