RchiOBHm_Chr2g0088081

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000974
Physical Location & Seq
Reverse (-)
2732997 .. 2733560
564 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 459 bp
ATGAAGTATGTGATCGTGCTTGTCATAGCAATTGCAGCAATCGCAGAAGGCGCAATATACACTGTAGGAGACGACATGGGCTGGATGGTTCCTCCCACTCCCGACTATTATGCTTCATGGGTTTCCAAGTATTACTTTGTGGAGAACGATACTCTAGTGTTCAACTTTGAAGAAGGACAGCATGACATCACTGTACTAACCAAGGAAGACTTCGACTCCTGCAACATGACGAATCCCTTGTTTCAAACCCCAGAACCAGGTGCAGTTTCGGTTGAGGCGAGCGACACGTTTTACTTCACGTGCAGCTTTGGTCAGCACTGCGCTAAAGGGCAAAAGTTCGCCATTTATTTTGCCCCTGCACCTTTGCCTCCCAGTCCGAGTCCGAGTGCATCTGCTGCTGCTGATCAATCTCTGGAGACCCGACTGTTCAAGTTTGTGACGGAAAAGAAGGGTAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

152

Amino Acids

16.76

Weight (kDa)

4.46

Isoelectric Point (pI)

38.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 29 - 111 2.8e-13 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcvI CACGTG 1 cut(s) 300
AfaI GTAC 1 cut(s) 195
AfiI CCNNNNNNNGG 1 cut(s) 257
AflIII ACRYGT 1 cut(s) 285
AgsI TTSAA 4 cut(s) 163, 170, 245, 430
AjnI CCWGG 1 cut(s) 256
AjuI GAANNNNNNNTTGG 2 cut(s) 194, 226
AluBI AGCT 1 cut(s) 306
AluI AGCT 1 cut(s) 306
Alw26I GTCTC 2 cut(s) 63, 410
ApeKI GCWGC 4 cut(s) 35, 303, 395, 398
AspLEI GCGC 2 cut(s) 53, 323
BaeI ACNNNNGTAYC 2 cut(s) 141, 174
BbrPI CACGTG 1 cut(s) 300
BbsI GAAGAC 1 cut(s) 213
BbvI GCAGC 4 cut(s) 47, 315, 382, 385
BccI CCATC 1 cut(s) 79
BcgI CGANNNNNNTGC 2 cut(s) 92, 126
BciT130I CCWGG 1 cut(s) 258
BclI TGATCA 1 cut(s) 403
BcoDI GTCTC 2 cut(s) 63, 410
BfaI CTAG 2 cut(s) 155, 457
BfmI CTRYAG 1 cut(s) 63
BisI GCNGC 4 cut(s) 36, 304, 396, 399
BlsI GCNGC 4 cut(s) 37, 305, 397, 400
Bme1390I CCNGG 1 cut(s) 258
BmiI GGNNCC 1 cut(s) 90
BmrFI CCNGG 1 cut(s) 258
BmrI ACTGGG 1 cut(s) 366
BmsI GCATC 1 cut(s) 398
BmuI ACTGGG 1 cut(s) 366
BpiI GAAGAC 1 cut(s) 213
BpmI CTGGAG 1 cut(s) 434
BsaAI YACGTR 1 cut(s) 300
BsaI GGTCTC 1 cut(s) 410
BsaJI CCNNGG 1 cut(s) 201
BsaXI ACNNNNNCTCC 2 cut(s) 200, 230
Bsc4I CCNNNNNNNGG 1 cut(s) 257
Bse1I ACTGG 1 cut(s) 372
BseBI CCWGG 1 cut(s) 258
BseDI CCNNGG 1 cut(s) 201
BseGI GGATG 1 cut(s) 90
BseLI CCNNNNNNNGG 1 cut(s) 257
BseNI ACTGG 1 cut(s) 372
BseXI GCAGC 4 cut(s) 47, 315, 382, 385
BsgI GTGCAG 3 cut(s) 282, 322, 342
BslI CCNNNNNNNGG 1 cut(s) 257
BsmAI GTCTC 2 cut(s) 63, 410
BsmBI CGTCTC 1 cut(s) 63
Bso31I GGTCTC 1 cut(s) 410
Bsp143I GATC 2 cut(s) 12, 403
BspLI GGNNCC 1 cut(s) 90
BspTNI GGTCTC 1 cut(s) 410
BsrI ACTGG 1 cut(s) 372
BssECI CCNNGG 1 cut(s) 201
BssMI GATC 2 cut(s) 12, 403
BssT1I CCWWGG 1 cut(s) 201
Bst2UI CCWGG 1 cut(s) 258
Bst4CI ACNGT 3 cut(s) 64, 193, 426
BstAPI GCANNNNNTGC 1 cut(s) 395
BstBAI YACGTR 1 cut(s) 300
BstC8I GCNNGC 1 cut(s) 280
BstF5I GGATG 1 cut(s) 90
BstHHI GCGC 2 cut(s) 53, 323
BstKTI GATC 2 cut(s) 15, 406
BstMAI GTCTC 2 cut(s) 63, 410
BstMBI GATC 2 cut(s) 12, 403
BstMWI GCNNNNNNNGC 4 cut(s) 35, 41, 50, 395
BstNI CCWGG 1 cut(s) 258
BstSCI CCNGG 1 cut(s) 256
BstSFI CTRYAG 1 cut(s) 63
BstV1I GCAGC 4 cut(s) 47, 315, 382, 385
BstV2I GAAGAC 1 cut(s) 213
BtsCI GGATG 1 cut(s) 90
BtsI GCAGTG 1 cut(s) 316
BtsIMutI CAGTG 3 cut(s) 60, 189, 316
Cac8I GCNNGC 1 cut(s) 280
CfoI GCGC 2 cut(s) 53, 323
CsiI ACCWGGT 1 cut(s) 256
Csp6I GTAC 1 cut(s) 194
CviAII CATG 4 cut(s) 76, 117, 182, 226
CviJI RGCY 2 cut(s) 81, 306
CviKI_1 RGCY 2 cut(s) 81, 306
CviQI GTAC 1 cut(s) 194
DpnI GATC 2 cut(s) 14, 405
DpnII GATC 2 cut(s) 12, 403
Eco130I CCWWGG 1 cut(s) 201
Eco31I GGTCTC 1 cut(s) 410
Eco72I CACGTG 1 cut(s) 300
EcoRII CCWGG 1 cut(s) 256
EcoT14I CCWWGG 1 cut(s) 201
ErhI CCWWGG 1 cut(s) 201
Esp3I CGTCTC 1 cut(s) 63
FaeI CATG 4 cut(s) 79, 120, 185, 229
FaiI YATR 8 cut(s) 9, 26, 58, 77, 111, 118, 183, 227
FalI AAGNNNNNCTT 4 cut(s) 119, 151, 194, 226
FatI CATG 4 cut(s) 75, 116, 181, 225
FbaI TGATCA 1 cut(s) 403
Fnu4HI GCNGC 4 cut(s) 36, 304, 396, 399
FokI GGATG 1 cut(s) 97
Fsp4HI GCNGC 4 cut(s) 36, 304, 396, 399
FspBI CTAG 2 cut(s) 155, 457
GlaI GCGC 2 cut(s) 52, 322
GluI GCNGC 4 cut(s) 36, 304, 396, 399
GsuI CTGGAG 1 cut(s) 434
HhaI GCGC 2 cut(s) 53, 323
Hin1II CATG 4 cut(s) 79, 120, 185, 229
Hin6I GCGC 2 cut(s) 51, 321
HinP1I GCGC 2 cut(s) 51, 321
HinfI GANTC 3 cut(s) 215, 232, 379
Hpy188I TCNGA 2 cut(s) 378, 384
Hpy188III TCNNGA 2 cut(s) 101, 413
HpyAV CCTTC 3 cut(s) 41, 167, 442
HpyCH4III ACNGT 3 cut(s) 64, 193, 426
HpyCH4IV ACGT 2 cut(s) 287, 299
HpyCH4V TGCA 6 cut(s) 35, 222, 263, 303, 359, 389
HpyF10VI GCNNNNNNNGC 4 cut(s) 35, 41, 50, 395
HpySE526I ACGT 2 cut(s) 287, 299
Hsp92II CATG 4 cut(s) 79, 120, 185, 229
HspAI GCGC 2 cut(s) 51, 321
Ksp22I TGATCA 1 cut(s) 403
Kzo9I GATC 2 cut(s) 12, 403
LpnPI CCDG 8 cut(s) 67, 232, 243, 264, 270, 369, 385, 398
Lsp1109I GCAGC 4 cut(s) 47, 315, 382, 385
LweI GCATC 1 cut(s) 398
MabI ACCWGGT 1 cut(s) 256
MaeI CTAG 2 cut(s) 155, 457
MaeII ACGT 2 cut(s) 287, 299
MaeIII GTNAC 2 cut(s) 436, 452
MalI GATC 2 cut(s) 14, 405
MboI GATC 2 cut(s) 12, 403
MboII GAAGA 2 cut(s) 182, 218
MfeI CAATTG 1 cut(s) 30
MluCI AATT 1 cut(s) 30
MlyI GAGTC 2 cut(s) 209, 388
MnlI CCTC 3 cut(s) 102, 268, 378
MspR9I CCNGG 1 cut(s) 258
MunI CAATTG 1 cut(s) 30
MvaI CCWGG 1 cut(s) 258
MwoI GCNNNNNNNGC 4 cut(s) 35, 41, 50, 395
NdeII GATC 2 cut(s) 12, 403
NlaIII CATG 4 cut(s) 79, 120, 185, 229
NlaIV GGNNCC 1 cut(s) 90
NmuCI GTSAC 1 cut(s) 436
PcsI WCGNNNNNNNCGW 1 cut(s) 275
PfeI GAWTC 1 cut(s) 232
PkrI GCNGC 4 cut(s) 37, 305, 397, 400
PleI GAGTC 2 cut(s) 209, 387
PmaCI CACGTG 1 cut(s) 300
PmlI CACGTG 1 cut(s) 300
PpsI GAGTC 2 cut(s) 209, 387
Ppu21I YACGTR 1 cut(s) 300
Psp6I CCWGG 1 cut(s) 256
PspCI CACGTG 1 cut(s) 300
PspGI CCWGG 1 cut(s) 256
PspN4I GGNNCC 1 cut(s) 90
RsaI GTAC 1 cut(s) 195
RsaNI GTAC 1 cut(s) 194
SatI GCNGC 4 cut(s) 36, 304, 396, 399
Sau3AI GATC 2 cut(s) 12, 403
SchI GAGTC 2 cut(s) 209, 388
ScrFI CCNGG 1 cut(s) 258
SetI ASST 5 cut(s) 262, 290, 302, 308, 364
SexAI ACCWGGT 1 cut(s) 256
SfaNI GCATC 1 cut(s) 398
SfcI CTRYAG 1 cut(s) 63
Sse9I AATT 1 cut(s) 30
SspMI CTAG 2 cut(s) 155, 457
StyD4I CCNGG 1 cut(s) 256
StyI CCWWGG 1 cut(s) 201
TaaI ACNGT 3 cut(s) 64, 193, 426
TaiI ACGT 2 cut(s) 290, 302
TaqI TCGA 1 cut(s) 213
TasI AATT 1 cut(s) 30
TatI WGTACW 1 cut(s) 193
TfiI GAWTC 1 cut(s) 232
TscAI CASTG 3 cut(s) 67, 196, 323
TseFI GTSAC 1 cut(s) 436
TseI GCWGC 4 cut(s) 35, 303, 395, 398
Tsp45I GTSAC 1 cut(s) 436
TspDTI ATGAA 2 cut(s) 17, 105
TspGWI ACGGA 1 cut(s) 455
TspRI CASTG 3 cut(s) 67, 196, 323
XspI CTAG 2 cut(s) 155, 457
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.