Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001937

Physical Location & Seq

Genomic Coordinates Forward (+)

37331909 .. 37332334

Gene Structure 426 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGGAGAAGGAAGAGGAGGCAAAAAACTGAAAGCAGGGTTAGGAATGGCAGTGAAGATCATATTATCGGTGTTGTTCAGTGGGTTTGTACTATTTCTTTTATATCTCTATGAGGTTTTGTTGCCAAAGCCGAAGAGGCTAAGATCAAAGCTTGAAGATCAAGGGATCAAAGGGCCTTGTCCTGTATTTATGTTGGGCAATATCACAGAAATGAAGAGGATCAAAGTCAAGGTGATGGAGTCGACAGGTACAGAAACAACAAATACTACTACTACCTCAATGAACCACCACCATTTTTCTACTGCTCATCATTGGCCTTCAACTATTTTTCCTCATCTGGTGCAATGGCAAAATGAATACGGTATGCCATTTCTACTTTCTCTGTTTTCGCTTGGAGAATCTTGTTATATACTGTTGTTCTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0010268 GO:0010817 GO:0016128 GO:0016131 GO:0016491 GO:0042445 GO:0042592 GO:0044238 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901615

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

141

Amino Acids

15.92

Weight (kDa)

9.48

Isoelectric Point (pI)

31.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001937)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g09120 FvH4_7g09120 FvH4_7g09121 FvH4_7g09121 FvH4_7g09121 FvH4_7g09121 FvH4_7g09121 FvH4_7g09121
prunus_persica	Prupe.2G120000_v2.0.a1
pyrus_communis	pycom07g07840
rosa_chinensis	RchiOBHm_Chr1g0344951 RchiOBHm_Chr1g0344991 RchiOBHm_Chr1g0345031 RchiOBHm_Chr1g0345051 RchiOBHm_Chr4g0385671
rosa_laevigata	RLG00000028855 RLG00000028856 RLG00000028859
rosa_multiflora	Rmu_sc0001143.1_g000032 Rmu_sc0003762.1_g000011 Rmu_sc0003762.1_g000012 Rmu_sc0005950.1_g000005
rosa_roxburghii	Rroxscaffold_1G00028900 Rroxscaffold_2G00116830 Rroxscaffold_3G00237850 Rroxscaffold_4G00305130 Rroxscaffold_4G00309370 Rroxscaffold_4G00309380 Rroxscaffold_4G00309400 Rroxscaffold_4G00309410
rosa_rugosa	Rorug01G0175700 Rorug01G0175800
rosa_samantha	Rh1AG193400 Rh1AG193600 Rh1AG193800 Rh1BG159600 Rh1BG160200 Rh1BG160300 Rh1CG178500 Rh1CG178600 Rh1CG178700 Rh1DG190400 Rh1DG190800
rosa_wichuraiana	Rw1G015930 Rw1G015950 Rw1G015960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	424
AccI	GTMKAC	1 cut(s)	242
AclWI	GGATC	2 cut(s)	173, 227
AfaI	GTAC	2 cut(s)	90, 250
AgsI	TTSAA	2 cut(s)	155, 321
AluBI	AGCT	1 cut(s)	151
AluI	AGCT	1 cut(s)	151
AlwI	GGATC	2 cut(s)	173, 227
AoxI	GGCC	2 cut(s)	173, 314
AspS9I	GGNCC	1 cut(s)	173
AsuHPI	GGTGA	1 cut(s)	244
BccI	CCATC	1 cut(s)	229
BglI	GCCNNNNNGGC	1 cut(s)	136
BmgT120I	GGNCC	1 cut(s)	173
Bse3DI	GCAATG	1 cut(s)	350
BseMI	GCAATG	1 cut(s)	350
BseRI	GAGGAG	1 cut(s)	30
BshFI	GGCC	2 cut(s)	175, 316
BsnI	GGCC	2 cut(s)	175, 316
Bsp143I	GATC	5 cut(s)	57, 143, 157, 165, 219
BspANI	GGCC	2 cut(s)	175, 316
BspPI	GGATC	2 cut(s)	173, 227
BsrDI	GCAATG	1 cut(s)	350
BssMI	GATC	5 cut(s)	57, 143, 157, 165, 219
Bst4CI	ACNGT	2 cut(s)	362, 414
Bst6I	CTCTTC	3 cut(s)	7, 128, 209
BstDEI	CTNAG	1 cut(s)	140
BstKTI	GATC	5 cut(s)	60, 146, 160, 168, 222
BstMBI	GATC	5 cut(s)	57, 143, 157, 165, 219
BstMWI	GCNNNNNNNGC	1 cut(s)	136
BsuRI	GGCC	2 cut(s)	175, 316
BtsI	GCAGTG	1 cut(s)	57
BtsIMutI	CAGTG	2 cut(s)	57, 85
Cfr13I	GGNCC	1 cut(s)	173
Csp6I	GTAC	2 cut(s)	89, 249
CviJI	RGCY	5 cut(s)	130, 139, 151, 175, 316
CviKI_1	RGCY	5 cut(s)	130, 139, 151, 175, 316
CviQI	GTAC	2 cut(s)	89, 249
DdeI	CTNAG	1 cut(s)	140
DpnI	GATC	5 cut(s)	59, 145, 159, 167, 221
DpnII	GATC	5 cut(s)	57, 143, 157, 165, 219
Eam1104I	CTCTTC	3 cut(s)	7, 128, 209
EarI	CTCTTC	3 cut(s)	7, 128, 209
EcoO109I	RGGNCCY	1 cut(s)	173
FaiI	YATR	8 cut(s)	62, 103, 111, 191, 365, 408, 410, 424
FblI	GTMKAC	1 cut(s)	242
HaeIII	GGCC	2 cut(s)	175, 316
HincII	GTYRAC	1 cut(s)	243
HindII	GTYRAC	1 cut(s)	243
HindIII	AAGCTT	1 cut(s)	149
HinfI	GANTC	2 cut(s)	239, 398
HphI	GGTGA	1 cut(s)	244
Hpy166II	GTNNAC	1 cut(s)	243
Hpy8I	GTNNAC	1 cut(s)	243
HpyAV	CCTTC	1 cut(s)	327
HpyCH4III	ACNGT	2 cut(s)	362, 414
HpyCH4V	TGCA	1 cut(s)	343
HpyF10VI	GCNNNNNNNGC	1 cut(s)	136
HpyF3I	CTNAG	1 cut(s)	140
Kzo9I	GATC	5 cut(s)	57, 143, 157, 165, 219
LpnPI	CCDG	4 cut(s)	21, 195, 231, 323
MalI	GATC	5 cut(s)	59, 145, 159, 167, 221
MboI	GATC	5 cut(s)	57, 143, 157, 165, 219
MboII	GAAGA	5 cut(s)	24, 67, 145, 167, 226
MlyI	GAGTC	1 cut(s)	248
MnlI	CCTC	7 cut(s)	8, 11, 106, 129, 210, 286, 342
MslI	CAYNNNNRTG	1 cut(s)	209
MwoI	GCNNNNNNNGC	1 cut(s)	136
NdeII	GATC	5 cut(s)	57, 143, 157, 165, 219
PfeI	GAWTC	1 cut(s)	398
PleI	GAGTC	1 cut(s)	247
PpsI	GAGTC	1 cut(s)	247
PsiI	TTATAA	1 cut(s)	424
PspPI	GGNCC	1 cut(s)	173
RsaI	GTAC	2 cut(s)	90, 250
RsaNI	GTAC	2 cut(s)	89, 249
RseI	CAYNNNNRTG	1 cut(s)	209
SalI	GTCGAC	1 cut(s)	241
Sau3AI	GATC	5 cut(s)	57, 143, 157, 165, 219
Sau96I	GGNCC	1 cut(s)	173
SchI	GAGTC	1 cut(s)	248
SetI	ASST	5 cut(s)	117, 153, 234, 250, 278
SmiMI	CAYNNNNRTG	1 cut(s)	209
TaaI	ACNGT	2 cut(s)	362, 414
TaqI	TCGA	1 cut(s)	242
TatI	WGTACW	1 cut(s)	88
TfiI	GAWTC	1 cut(s)	398
TscAI	CASTG	2 cut(s)	57, 85
TspDTI	ATGAA	3 cut(s)	227, 296, 369
TspRI	CASTG	2 cut(s)	57, 85
XmiI	GTMKAC	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.