Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_chinensis

Chromosome

Unknown

Orthogroup ID

OG0000742

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGAATAAACAAGTCAGCCAGCTTCATAGCACACTAGAGGAAAAGGAGCAACTTATTGTGCAATATAAGGAACGAGAGAAGAATCTGGAAGAACAGATCACAGAGAATCTTGCATCGCTGACTGCTGCTGAAATTAAACTTGTGGAAGATAAGAAGCACTATGACCTCATGCTTGAGAGTAAACAACTAGAACTGTCAAGGCATTTGAAAGACATATCTCAGAGGAATGACCAGAAGTATGAGGTGGAGAAGCTGGAGATAGTTAACATGGAAAAGCAAAAGGTTTTCTCATTTTTACCTTCTCCTGGAATATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000795 GO:0000802 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0051276 GO:0051321 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0099086 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

105

Amino Acids

12.42

Weight (kDa)

5.43

Isoelectric Point (pI)

51.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22260 AT1G22260 AT1G22260 AT1G22275 AT1G22275 AT1G22275
fragaria_vesca	FvH4_5g32650 FvH4_5g32780 FvH4_5g37341 FvH4_5g37341 FvH4_5g37341 FvH4_5g37878 FvH4_5g39260 FvH4_5g39261 FvH4_6g40021
malus_domestica	MD15G1368600.v1.1
prunus_persica	Prupe.1G516800_v2.0.a1
pyrus_communis	pycom15g33040
rosa_chinensis	RchiOBHm_Chr0c28g0500891 RchiOBHm_Chr0c28g0500941 RchiOBHm_Chr0c28g0500951 RchiOBHm_Chr0c28g0501001 RchiOBHm_Chr0c28g0501031 RchiOBHm_Chr0c28g0501041 RchiOBHm_Chr2g0168611 RchiOBHm_Chr7g0227211 RchiOBHm_Chr7g0239001 RchiOBHm_Chr7g0240441 RchiOBHm_Chr7g0243501 RchiOBHm_Chr7g0243551 RchiOBHm_Chr7g0243591 RchiOBHm_Chr7g0243601 RchiOBHm_Chr7g0243631
rosa_laevigata	RLG00000000697 RLG00000000791 RLG00000001655 RLG00000012649 RLG00000029503 RLG00000029517
rosa_multiflora	Rmu_sc0000477.1_g000005 Rmu_sc0000808.1_g000048 Rmu_sc0001157.1_g000007 Rmu_sc0003467.1_g000028 Rmu_sc0004062.1_g000005 Rmu_sc0004062.1_g000012 Rmu_sc0004132.1_g000002 Rmu_sc0007030.1_g000007 Rmu_sc0007424.1_g000006
rosa_roxburghii	Rroxscaffold_3G00220080 Rroxscaffold_3G00221390 Rroxscaffold_3G00222050 Rroxscaffold_3G00222080
rosa_rugosa	Rorug04G0112400 Rorug04G0112500 Rorug04G0112500 Rorug05G0574800 Rorug07G0324400 Rorug07G0324800
rosa_samantha	Rh2CG397000 Rh5BG532300 Rh5BG532500 Rh5CG411900 Rh5CG556200 Rh7BG420900 Rh7BG452000 Rh7CG496600 Rh7CG496800 Rh7DG464100
rosa_wichuraiana	Rw2G046820 Rw5G047300 Rw7G039610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	305
AgsI	TTSAA	1 cut(s)	208
AjnI	CCWGG	1 cut(s)	304
AluBI	AGCT	2 cut(s)	22, 253
AluI	AGCT	2 cut(s)	22, 253
ApeKI	GCWGC	1 cut(s)	125
BbvI	GCAGC	1 cut(s)	112
BciT130I	CCWGG	1 cut(s)	306
BfaI	CTAG	2 cut(s)	35, 188
BisI	GCNGC	1 cut(s)	126
BlsI	GCNGC	1 cut(s)	127
Bme1390I	CCNGG	1 cut(s)	306
BmrFI	CCNGG	1 cut(s)	306
BmsI	GCATC	1 cut(s)	122
BpmI	CTGGAG	1 cut(s)	275
BpuEI	CTTGAG	1 cut(s)	194
Bsc4I	CCNNNNNNNGG	1 cut(s)	305
BseBI	CCWGG	1 cut(s)	306
BseLI	CCNNNNNNNGG	1 cut(s)	305
BseMII	CTCAG	1 cut(s)	233
BseXI	GCAGC	1 cut(s)	112
BslI	CCNNNNNNNGG	1 cut(s)	305
Bsp143I	GATC	1 cut(s)	96
BspCNI	CTCAG	1 cut(s)	232
BssMI	GATC	1 cut(s)	96
Bst2UI	CCWGG	1 cut(s)	306
Bst4CI	ACNGT	1 cut(s)	195
BstC8I	GCNNGC	1 cut(s)	20
BstDEI	CTNAG	1 cut(s)	219
BstKTI	GATC	1 cut(s)	99
BstMBI	GATC	1 cut(s)	96
BstNI	CCWGG	1 cut(s)	306
BstSCI	CCNGG	1 cut(s)	304
BstV1I	GCAGC	1 cut(s)	112
BtgZI	GCGATG	1 cut(s)	99
Cac8I	GCNNGC	1 cut(s)	20
CviAII	CATG	2 cut(s)	169, 268
CviJI	RGCY	3 cut(s)	18, 22, 253
CviKI_1	RGCY	3 cut(s)	18, 22, 253
DdeI	CTNAG	1 cut(s)	219
DpnI	GATC	1 cut(s)	98
DpnII	GATC	1 cut(s)	96
EcoRII	CCWGG	1 cut(s)	304
FaeI	CATG	2 cut(s)	172, 271
FaiI	YATR	8 cut(s)	27, 66, 162, 170, 215, 240, 269, 313
FatI	CATG	2 cut(s)	168, 267
Fnu4HI	GCNGC	1 cut(s)	126
Fsp4HI	GCNGC	1 cut(s)	126
FspBI	CTAG	2 cut(s)	35, 188
GluI	GCNGC	1 cut(s)	126
GsuI	CTGGAG	1 cut(s)	275
Hin1II	CATG	2 cut(s)	172, 271
HincII	GTYRAC	1 cut(s)	265
HindII	GTYRAC	1 cut(s)	265
HinfI	GANTC	2 cut(s)	82, 106
HpaI	GTTAAC	1 cut(s)	265
Hpy166II	GTNNAC	2 cut(s)	182, 265
Hpy188I	TCNGA	1 cut(s)	222
Hpy188III	TCNNGA	1 cut(s)	86
Hpy8I	GTNNAC	2 cut(s)	182, 265
HpyAV	CCTTC	1 cut(s)	309
HpyCH4III	ACNGT	1 cut(s)	195
HpyCH4V	TGCA	2 cut(s)	61, 113
HpyF3I	CTNAG	1 cut(s)	219
Hsp92II	CATG	2 cut(s)	172, 271
KspAI	GTTAAC	1 cut(s)	265
Kzo9I	GATC	1 cut(s)	96
LmnI	GCTCC	1 cut(s)	46
LpnPI	CCDG	5 cut(s)	32, 71, 239, 245, 291
Lsp1109I	GCAGC	1 cut(s)	112
LweI	GCATC	1 cut(s)	122
MaeI	CTAG	2 cut(s)	35, 188
MalI	GATC	1 cut(s)	98
MboI	GATC	1 cut(s)	96
MboII	GAAGA	3 cut(s)	91, 101, 158
MluCI	AATT	1 cut(s)	132
MnlI	CCTC	4 cut(s)	31, 176, 216, 235
MseI	TTAA	2 cut(s)	135, 264
MspR9I	CCNGG	1 cut(s)	306
MvaI	CCWGG	1 cut(s)	306
NdeII	GATC	1 cut(s)	96
NlaIII	CATG	2 cut(s)	172, 271
PfeI	GAWTC	2 cut(s)	82, 106
PfoI	TCCNGGA	1 cut(s)	304
PkrI	GCNGC	1 cut(s)	127
Psp6I	CCWGG	1 cut(s)	304
PspGI	CCWGG	1 cut(s)	304
SaqAI	TTAA	2 cut(s)	135, 264
SatI	GCNGC	1 cut(s)	126
Sau3AI	GATC	1 cut(s)	96
ScrFI	CCNGG	1 cut(s)	306
SetI	ASST	6 cut(s)	24, 168, 246, 255, 285, 301
SfaNI	GCATC	1 cut(s)	122
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
Sse9I	AATT	1 cut(s)	132
SspMI	CTAG	2 cut(s)	35, 188
StyD4I	CCNGG	1 cut(s)	304
TaaI	ACNGT	1 cut(s)	195
TasI	AATT	1 cut(s)	132
TfiI	GAWTC	2 cut(s)	82, 106
Tru1I	TTAA	2 cut(s)	135, 264
Tru9I	TTAA	2 cut(s)	135, 264
TseI	GCWGC	1 cut(s)	125
TspDTI	ATGAA	2 cut(s)	14, 17
XspI	CTAG	2 cut(s)	35, 188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.