Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_chinensis

Chromosome

Unknown

Orthogroup ID

OG0000742

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGCACAACTTTCAGAGGAATGCCGTATAGCCAGGGAGAGGATACAGAAGTTGGAGTTTGAAGCTGAAGCTCTGGTCTCAAAGAAGATTGAAACAGAGAAGTTGGTGTCTGAATTAGAACTGCAAATTGATTCTCTGTCAGAAAGTTCAAGATCATCTGAGAATAAAAGGCAAATTCTGTTGCTGAAAATCTCAGCACTAGAAACTGAGAATAAAGATAATACAGAGAAACTACAAGCAGAGATACAGAGAAGCGGAACAATAGATGGTTTACTGAAGCAAGGTGAAACACATGAGCAGCATGTAGATTTGATGGATAAACAAGTCAGCCAGCTTCATAGCACACTAGAGGAAAAGGAGCAACTTATTGTGCAATATAAGGAACGAGAGAAGAATCTGGAAGAACAGATCACAGAGAATCTTGCATCGCTGACTGCTGCTGAAATTAAACTTGTGGAAGATAAGAAGCACTATGACCTCATGCTTGAGAGTAAACAACTAGAACTGTCAAGGCATTTGAAAGACATATCTCAGAGGAAGACCAGTTGTTTAACTACTTTGGATTGGCATTATGACAAATTTACTTGGGCAATTAATGACATCCGGAAGAAGTATGAGGTGGAGAAGCTGGAGATAGTTAACATGGAAAAGCAAAAGGCAGAAAAACTTGTTCGAGAAAGGGCGATAGAATGTGAGAAAAAACTTGAAGAATGCAGAGAAGAATCTAGGCAGCACTTAATGCATGTTCAGGAGGAACATACTGGCGCTGGAGGAGAAGCAGAGGCATTACTGCAATTGCAGTGGAAAGTTATGAGTGATAAGCCAGAAGGGAGCAAGAAGAGAGGTCAGCGTTCTCTGAGAAGACCAGAGCATGAGAAGGATTCACCTCTAGTGGGAGCAAAACAAACACCTGTGTCAACACTGTTGAAGAAAGCTTCAGAGAATATCAATTCACCAACTGTAATGAATATTCAAAGCACCACAAAAGGTAATTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000795 GO:0000802 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0051276 GO:0051321 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0099086 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

332

Amino Acids

38.41

Weight (kDa)

5.83

Isoelectric Point (pI)

66.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22260 AT1G22260 AT1G22260 AT1G22275 AT1G22275 AT1G22275
fragaria_vesca	FvH4_5g32650 FvH4_5g32780 FvH4_5g37341 FvH4_5g37341 FvH4_5g37341 FvH4_5g37878 FvH4_5g39260 FvH4_5g39261 FvH4_6g40021
malus_domestica	MD15G1368600.v1.1
prunus_persica	Prupe.1G516800_v2.0.a1
pyrus_communis	pycom15g33040
rosa_chinensis	RchiOBHm_Chr0c28g0500891 RchiOBHm_Chr0c28g0500941 RchiOBHm_Chr0c28g0500951 RchiOBHm_Chr0c28g0501001 RchiOBHm_Chr0c28g0501031 RchiOBHm_Chr0c28g0501041 RchiOBHm_Chr2g0168611 RchiOBHm_Chr7g0227211 RchiOBHm_Chr7g0239001 RchiOBHm_Chr7g0240441 RchiOBHm_Chr7g0243501 RchiOBHm_Chr7g0243551 RchiOBHm_Chr7g0243591 RchiOBHm_Chr7g0243601 RchiOBHm_Chr7g0243631
rosa_laevigata	RLG00000000697 RLG00000000791 RLG00000001655 RLG00000012649 RLG00000029503 RLG00000029517
rosa_multiflora	Rmu_sc0000477.1_g000005 Rmu_sc0000808.1_g000048 Rmu_sc0001157.1_g000007 Rmu_sc0003467.1_g000028 Rmu_sc0004062.1_g000005 Rmu_sc0004062.1_g000012 Rmu_sc0004132.1_g000002 Rmu_sc0007030.1_g000007 Rmu_sc0007424.1_g000006
rosa_roxburghii	Rroxscaffold_3G00220080 Rroxscaffold_3G00221390 Rroxscaffold_3G00222050 Rroxscaffold_3G00222080
rosa_rugosa	Rorug04G0112400 Rorug04G0112500 Rorug04G0112500 Rorug05G0574800 Rorug07G0324400 Rorug07G0324800
rosa_samantha	Rh2CG397000 Rh5BG532300 Rh5BG532500 Rh5CG411900 Rh5CG556200 Rh7BG420900 Rh7BG452000 Rh7CG496600 Rh7CG496800 Rh7DG464100
rosa_wichuraiana	Rw2G046820 Rw5G047300 Rw7G039610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	603
AciI	CCGC	1 cut(s)	255
AcsI	RAATTY	2 cut(s)	174, 578
AcuI	CTGAAG	3 cut(s)	87, 296, 921
AfiI	CCNNNNNNNGG	2 cut(s)	39, 893
AgsI	TTSAA	7 cut(s)	62, 92, 150, 520, 707, 928, 974
AjnI	CCWGG	1 cut(s)	32
AluBI	AGCT	5 cut(s)	65, 71, 334, 628, 935
AluI	AGCT	5 cut(s)	65, 71, 334, 628, 935
Alw26I	GTCTC	1 cut(s)	82
Aor13HI	TCCGGA	1 cut(s)	603
ApeKI	GCWGC	3 cut(s)	298, 437, 730
ApoI	RAATTY	2 cut(s)	174, 578
AseI	ATTAAT	1 cut(s)	594
AspLEI	GCGC	1 cut(s)	767
AsuHPI	GGTGA	3 cut(s)	296, 876, 945
BaeI	ACNNNNGTAYC	2 cut(s)	35, 68
BbsI	GAAGAC	2 cut(s)	545, 868
BbvI	GCAGC	3 cut(s)	310, 424, 742
BccI	CCATC	2 cut(s)	260, 307
BceAI	ACGGC	1 cut(s)	9
BciT130I	CCWGG	1 cut(s)	34
BciVI	GTATCC	1 cut(s)	36
BcoDI	GTCTC	1 cut(s)	82
BfaI	CTAG	5 cut(s)	200, 347, 500, 726, 890
BfoI	RGCGCY	1 cut(s)	768
BfuI	GTATCC	1 cut(s)	36
BisI	GCNGC	3 cut(s)	299, 438, 731
BlsI	GCNGC	3 cut(s)	300, 439, 732
Bme1390I	CCNGG	1 cut(s)	34
BmrFI	CCNGG	1 cut(s)	34
BmsI	GCATC	1 cut(s)	434
BpiI	GAAGAC	2 cut(s)	545, 868
BpmI	CTGGAG	2 cut(s)	650, 789
BpuEI	CTTGAG	1 cut(s)	506
BsaI	GGTCTC	1 cut(s)	82
BsaJI	CCNNGG	1 cut(s)	33
BsaWI	WCCGGW	1 cut(s)	603
Bsc4I	CCNNNNNNNGG	2 cut(s)	39, 893
Bse1I	ACTGG	2 cut(s)	543, 766
BseAI	TCCGGA	1 cut(s)	603
BseBI	CCWGG	1 cut(s)	34
BseDI	CCNNGG	1 cut(s)	33
BseGI	GGATG	1 cut(s)	600
BseLI	CCNNNNNNNGG	2 cut(s)	39, 893
BseMII	CTCAG	5 cut(s)	150, 198, 207, 545, 848
BseNI	ACTGG	2 cut(s)	543, 766
BseRI	GAGGAG	1 cut(s)	786
BseXI	GCAGC	3 cut(s)	310, 424, 742
BsiSI	CCGG	1 cut(s)	604
BslI	CCNNNNNNNGG	2 cut(s)	39, 893
BsmAI	GTCTC	1 cut(s)	82
BsmI	GAATGC	2 cut(s)	26, 716
Bso31I	GGTCTC	1 cut(s)	82
Bsp13I	TCCGGA	1 cut(s)	603
Bsp143I	GATC	2 cut(s)	152, 408
BspACI	CCGC	1 cut(s)	255
BspCNI	CTCAG	5 cut(s)	151, 199, 206, 544, 849
BspEI	TCCGGA	1 cut(s)	603
BspTNI	GGTCTC	1 cut(s)	82
BsrI	ACTGG	2 cut(s)	543, 766
BssECI	CCNNGG	1 cut(s)	33
BssMI	GATC	2 cut(s)	152, 408
Bst2UI	CCWGG	1 cut(s)	34
Bst4CI	ACNGT	3 cut(s)	507, 924, 961
Bst6I	CTCTTC	1 cut(s)	833
BstAPI	GCANNNNNTGC	1 cut(s)	739
BstC8I	GCNNGC	1 cut(s)	332
BstDEI	CTNAG	5 cut(s)	159, 193, 207, 531, 857
BstF5I	GGATG	1 cut(s)	600
BstH2I	RGCGCY	1 cut(s)	768
BstHHI	GCGC	1 cut(s)	767
BstKTI	GATC	2 cut(s)	155, 411
BstMAI	GTCTC	1 cut(s)	82
BstMBI	GATC	2 cut(s)	152, 408
BstMWI	GCNNNNNNNGC	1 cut(s)	739
BstNI	CCWGG	1 cut(s)	34
BstNSI	RCATGY	2 cut(s)	305, 746
BstSCI	CCNGG	1 cut(s)	32
BstV1I	GCAGC	3 cut(s)	310, 424, 742
BstV2I	GAAGAC	2 cut(s)	545, 868
BsuI	GTATCC	1 cut(s)	36
BtgZI	GCGATG	1 cut(s)	411
BtsCI	GGATG	1 cut(s)	600
BtsI	GCAGTG	1 cut(s)	806
BtsIMutI	CAGTG	2 cut(s)	806, 920
Cac8I	GCNNGC	1 cut(s)	332
CfoI	GCGC	1 cut(s)	767
CspCI	CAANNNNNGTGG	2 cut(s)	782, 817
CviAII	CATG	6 cut(s)	293, 302, 481, 643, 743, 872
CviJI	RGCY	8 cut(s)	32, 65, 71, 330, 334, 628, 823, 935
CviKI_1	RGCY	8 cut(s)	32, 65, 71, 330, 334, 628, 823, 935
DdeI	CTNAG	5 cut(s)	159, 193, 207, 531, 857
DpnI	GATC	2 cut(s)	154, 410
DpnII	GATC	2 cut(s)	152, 408
Eam1104I	CTCTTC	1 cut(s)	833
EarI	CTCTTC	1 cut(s)	833
Eco31I	GGTCTC	1 cut(s)	82
Eco57I	CTGAAG	3 cut(s)	87, 296, 921
EcoRII	CCWGG	1 cut(s)	32
EcoT22I	ATGCAT	1 cut(s)	744
FaeI	CATG	6 cut(s)	296, 305, 484, 646, 746, 875
FatI	CATG	6 cut(s)	292, 301, 480, 642, 742, 871
Fnu4HI	GCNGC	3 cut(s)	299, 438, 731
FokI	GGATG	1 cut(s)	587
Fsp4HI	GCNGC	3 cut(s)	299, 438, 731
FspBI	CTAG	5 cut(s)	200, 347, 500, 726, 890
GlaI	GCGC	1 cut(s)	766
GluI	GCNGC	3 cut(s)	299, 438, 731
GsuI	CTGGAG	2 cut(s)	650, 789
HaeII	RGCGCY	1 cut(s)	768
HapII	CCGG	1 cut(s)	604
HhaI	GCGC	1 cut(s)	767
Hin1II	CATG	6 cut(s)	296, 305, 484, 646, 746, 875
Hin6I	GCGC	1 cut(s)	765
HinP1I	GCGC	1 cut(s)	765
HincII	GTYRAC	2 cut(s)	640, 918
HindII	GTYRAC	2 cut(s)	640, 918
HindIII	AAGCTT	1 cut(s)	933
HinfI	GANTC	5 cut(s)	131, 394, 418, 722, 881
HpaI	GTTAAC	1 cut(s)	640
HpaII	CCGG	1 cut(s)	604
HphI	GGTGA	3 cut(s)	296, 876, 945
Hpy166II	GTNNAC	4 cut(s)	272, 494, 640, 918
Hpy188I	TCNGA	7 cut(s)	16, 112, 142, 160, 534, 858, 940
Hpy188III	TCNNGA	6 cut(s)	150, 398, 604, 674, 749, 996
Hpy8I	GTNNAC	4 cut(s)	272, 494, 640, 918
HpyAV	CCTTC	2 cut(s)	821, 871
HpyCH4III	ACNGT	3 cut(s)	507, 924, 961
HpyCH4V	TGCA	7 cut(s)	124, 373, 425, 714, 742, 793, 799
HpyF10VI	GCNNNNNNNGC	1 cut(s)	739
HpyF3I	CTNAG	5 cut(s)	159, 193, 207, 531, 857
Hsp92II	CATG	6 cut(s)	296, 305, 484, 646, 746, 875
HspAI	GCGC	1 cut(s)	765
Kpn2I	TCCGGA	1 cut(s)	603
KspAI	GTTAAC	1 cut(s)	640
Kzo9I	GATC	2 cut(s)	152, 408
LmnI	GCTCC	3 cut(s)	358, 831, 896
Lsp1109I	GCAGC	3 cut(s)	310, 424, 742
LweI	GCATC	1 cut(s)	434
MaeI	CTAG	5 cut(s)	200, 347, 500, 726, 890
MalI	GATC	2 cut(s)	154, 410
MboI	GATC	2 cut(s)	152, 408
MfeI	CAATTG	1 cut(s)	794
MluCI	AATT	9 cut(s)	113, 126, 174, 444, 578, 591, 794, 949, 991
MmeI	TCCRAC	1 cut(s)	33
Mph1103I	ATGCAT	1 cut(s)	744
MroI	TCCGGA	1 cut(s)	603
MseI	TTAA	5 cut(s)	447, 551, 594, 639, 737
MspI	CCGG	1 cut(s)	604
MspR9I	CCNGG	1 cut(s)	34
MunI	CAATTG	1 cut(s)	794
Mva1269I	GAATGC	2 cut(s)	26, 716
MvaI	CCWGG	1 cut(s)	34
MwoI	GCNNNNNNNGC	1 cut(s)	739
NdeII	GATC	2 cut(s)	152, 408
NlaIII	CATG	6 cut(s)	296, 305, 484, 646, 746, 875
NsiI	ATGCAT	1 cut(s)	744
NspI	RCATGY	2 cut(s)	305, 746
PctI	GAATGC	2 cut(s)	26, 716
PfeI	GAWTC	5 cut(s)	131, 394, 418, 722, 881
PkrI	GCNGC	3 cut(s)	300, 439, 732
PshBI	ATTAAT	1 cut(s)	594
Psp6I	CCWGG	1 cut(s)	32
PspGI	CCWGG	1 cut(s)	32
SaqAI	TTAA	5 cut(s)	447, 551, 594, 639, 737
SatI	GCNGC	3 cut(s)	299, 438, 731
Sau3AI	GATC	2 cut(s)	152, 408
ScrFI	CCNGG	1 cut(s)	34
SfaNI	GCATC	1 cut(s)	434
SmlI	CTYRAG	1 cut(s)	485
SmoI	CTYRAG	1 cut(s)	485
Sse9I	AATT	9 cut(s)	113, 126, 174, 444, 578, 591, 794, 949, 991
SsiI	CCGC	1 cut(s)	255
SspI	AATATT	1 cut(s)	970
SspMI	CTAG	5 cut(s)	200, 347, 500, 726, 890
StyD4I	CCNGG	1 cut(s)	32
TaaI	ACNGT	3 cut(s)	507, 924, 961
TaqI	TCGA	1 cut(s)	673
TasI	AATT	9 cut(s)	113, 126, 174, 444, 578, 591, 794, 949, 991
TfiI	GAWTC	5 cut(s)	131, 394, 418, 722, 881
Tru1I	TTAA	5 cut(s)	447, 551, 594, 639, 737
Tru9I	TTAA	5 cut(s)	447, 551, 594, 639, 737
TscAI	CASTG	2 cut(s)	806, 927
TseI	GCWGC	3 cut(s)	298, 437, 730
TspDTI	ATGAA	2 cut(s)	326, 980
TspRI	CASTG	2 cut(s)	806, 927
VspI	ATTAAT	1 cut(s)	594
XapI	RAATTY	2 cut(s)	174, 578
XceI	RCATGY	2 cut(s)	305, 746
XspI	CTAG	5 cut(s)	200, 347, 500, 726, 890
Zsp2I	ATGCAT	1 cut(s)	744

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.