RchiOBHm_Chr0c19g0500131

Homeodomain

Basic Information

Type: Sequence Only
Biological Identity
rosa_chinensis
Unknown
Physical Location & Seq
Reverse (-)
0 .. 0
1 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 651 bp
ATGGAACCACAAACTCTGCAACTAATAGAGCAACAGACCCAGCAACAAATCGAGGATGGAGGAAACAACCAAGCAGCCGGGACTAATAACCGGTGGGCTCCCACACCGCCTCAACTAAGAATCCTCAAGGGCCTTTACTATGATAAGGGTTTTAAGTACCCAACTCCAGAGCAGATTCAAGAGATCTCCCTCCATCTGAAACAGTATGGGCAGATCGAGGACAAAAACGTCTTCTTTTGGTTCCAGAACCTCAAGGCTCGTGAGAGGCAGAAGTTGAAGGAATTTCGGAACGTTCCGGTTGGTGGATCTCTCGATCTCAATTTTGGATCCACTAGTTCTACTGATGATGGTAGATCCATTGATCTAAACTTTGGGTCACGTGTCGGCTATGGTGTTGACCCATATTCCTCCTCACCCTTCAACACTAATACCAGTACTACCTCCTTTGGCACAACAGGAGGACAATCTTTCATGGAACAACGAGGAGGAGATCACCAGGAGATTGAAACCCTTCCACTATTCCCCATGCATGGTGAGGACATCTTTGGCAACATGAAGACTACTTCTGAGGGAGGTAGCGGCTATGGCGATGACTCTCGCATTTCCCTTGAGCTCAGCCTCAACTCCTACGGAGATGCAGACATGGCTTAG

Protein Analysis

216

Amino Acids

24.04

Weight (kDa)

4.74

Isoelectric Point (pI)

51.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 30 - 90 1.8e-11 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000180)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr0c19g0499991 RchiOBHm_Chr0c19g0500021 RchiOBHm_Chr0c19g0500131 RchiOBHm_Chr0c31g0501321 RchiOBHm_Chr0c31g0501441 RchiOBHm_Chr1g0365611 RchiOBHm_Chr1g0366061 RchiOBHm_Chr1g0367951 RchiOBHm_Chr1g0369471 RchiOBHm_Chr1g0377271 RchiOBHm_Chr1g0379021 RchiOBHm_Chr1g0379461 RchiOBHm_Chr1g0381431 RchiOBHm_Chr1g0383551 RchiOBHm_Chr1g0383621 RchiOBHm_Chr2g0120951 RchiOBHm_Chr2g0121321 RchiOBHm_Chr2g0121381 RchiOBHm_Chr2g0121801 RchiOBHm_Chr2g0121861 RchiOBHm_Chr2g0122211 RchiOBHm_Chr2g0122471 RchiOBHm_Chr2g0122511 RchiOBHm_Chr2g0122751 RchiOBHm_Chr2g0123361 RchiOBHm_Chr2g0124071 RchiOBHm_Chr2g0124341 RchiOBHm_Chr2g0124361 RchiOBHm_Chr2g0124511 RchiOBHm_Chr2g0124641 RchiOBHm_Chr2g0125051 RchiOBHm_Chr2g0125111 RchiOBHm_Chr2g0125641 RchiOBHm_Chr2g0125871 RchiOBHm_Chr2g0125901 RchiOBHm_Chr2g0126011 RchiOBHm_Chr2g0126291 RchiOBHm_Chr2g0126341 RchiOBHm_Chr2g0126611 RchiOBHm_Chr2g0126671 RchiOBHm_Chr2g0126701 RchiOBHm_Chr2g0127021 RchiOBHm_Chr2g0127071 RchiOBHm_Chr2g0127361 RchiOBHm_Chr2g0127691 RchiOBHm_Chr2g0128041 RchiOBHm_Chr2g0128051 RchiOBHm_Chr2g0128061 RchiOBHm_Chr2g0128141 RchiOBHm_Chr2g0128171 RchiOBHm_Chr2g0128181 RchiOBHm_Chr2g0128551 RchiOBHm_Chr2g0128991 RchiOBHm_Chr2g0130061 RchiOBHm_Chr2g0130391 RchiOBHm_Chr2g0130631 RchiOBHm_Chr2g0130921 RchiOBHm_Chr2g0132731 RchiOBHm_Chr2g0133461 RchiOBHm_Chr2g0133921 RchiOBHm_Chr2g0134031 RchiOBHm_Chr2g0134281 RchiOBHm_Chr2g0134351 RchiOBHm_Chr2g0135501 RchiOBHm_Chr2g0135821 RchiOBHm_Chr2g0135931 RchiOBHm_Chr2g0137501 RchiOBHm_Chr2g0139141 RchiOBHm_Chr2g0139511 RchiOBHm_Chr2g0142411 RchiOBHm_Chr2g0143261 RchiOBHm_Chr2g0144171 RchiOBHm_Chr2g0144741 RchiOBHm_Chr2g0144841 RchiOBHm_Chr2g0145021 RchiOBHm_Chr2g0145831 RchiOBHm_Chr2g0145881 RchiOBHm_Chr2g0146081 RchiOBHm_Chr2g0146141 RchiOBHm_Chr2g0146671 RchiOBHm_Chr2g0149001 RchiOBHm_Chr2g0151811 RchiOBHm_Chr2g0151821 RchiOBHm_Chr2g0151831 RchiOBHm_Chr2g0152051 RchiOBHm_Chr2g0154791 RchiOBHm_Chr2g0155541 RchiOBHm_Chr2g0160791 RchiOBHm_Chr2g0161631 RchiOBHm_Chr2g0162151 RchiOBHm_Chr2g0162751 RchiOBHm_Chr2g0166561 RchiOBHm_Chr2g0166751 RchiOBHm_Chr2g0168891 RchiOBHm_Chr2g0170211 RchiOBHm_Chr2g0170781 RchiOBHm_Chr2g0172831 RchiOBHm_Chr2g0174791 RchiOBHm_Chr3g0448081 RchiOBHm_Chr3g0449761 RchiOBHm_Chr3g0453291 RchiOBHm_Chr3g0456271 RchiOBHm_Chr3g0456461 RchiOBHm_Chr3g0458351 RchiOBHm_Chr3g0461411 RchiOBHm_Chr3g0461511 RchiOBHm_Chr3g0463871 RchiOBHm_Chr3g0467841 RchiOBHm_Chr3g0470081 RchiOBHm_Chr3g0470571 RchiOBHm_Chr7g0187061 RchiOBHm_Chr7g0187461 RchiOBHm_Chr7g0187681 RchiOBHm_Chr7g0189901 RchiOBHm_Chr7g0190271 RchiOBHm_Chr7g0193451 RchiOBHm_Chr7g0194081 RchiOBHm_Chr7g0195771 RchiOBHm_Chr7g0196301 RchiOBHm_Chr7g0196911
rosa_multiflora Rmu_sc0000236.1_g000047 Rmu_sc0000284.1_g000007 Rmu_sc0000288.1_g000006 Rmu_sc0000507.1_g000017 Rmu_sc0000580.1_g000015 Rmu_sc0000663.1_g000011 Rmu_sc0000675.1_g000024 Rmu_sc0000693.1_g000072 Rmu_sc0000779.1_g000005 Rmu_sc0000851.1_g000015 Rmu_sc0000962.1_g000001 Rmu_sc0001493.1_g000055 Rmu_sc0001669.1_g000025 Rmu_sc0001891.1_g000051 Rmu_sc0001926.1_g000007 Rmu_sc0002082.1_g000025 Rmu_sc0002141.1_g000001 Rmu_sc0002141.1_g000004 Rmu_sc0002414.1_g000012 Rmu_sc0002557.1_g000022 Rmu_sc0002709.1_g000038 Rmu_sc0002897.1_g000004 Rmu_sc0002934.1_g000055 Rmu_sc0003692.1_g000017 Rmu_sc0004283.1_g000068 Rmu_sc0004598.1_g000010 Rmu_sc0004614.1_g000004 Rmu_sc0004805.1_g000006 Rmu_sc0005142.1_g000041 Rmu_sc0005777.1_g000001 Rmu_sc0006420.1_g000019 Rmu_sc0006803.1_g000016 Rmu_sc0007034.1_g000015 Rmu_sc0008079.1_g000017 Rmu_sc0008148.1_g000040 Rmu_sc0008608.1_g000007 Rmu_sc0008675.1_g000001 Rmu_sc0009663.1_g000001 Rmu_sc0010188.1_g000003 Rmu_sc0010739.1_g000005 Rmu_sc0016265.1_g000001 Rmu_sc0031757.1_g000001 Rmu_ssc0000087.1_g000024 Rmu_ssc0000438.1_g000029
rosa_roxburghii Rroxscaffold_1G00003350
rosa_rugosa Rorug03G0248400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 227
AciI CCGC 2 cut(s) 107, 579
AclI AACGTT 1 cut(s) 291
AclWI GGATC 4 cut(s) 313, 321, 334, 348
AcsI RAATTY 1 cut(s) 281
AcvI CACGTG 1 cut(s) 380
AfaI GTAC 2 cut(s) 158, 436
AfiI CCNNNNNNNGG 2 cut(s) 302, 530
AflIII ACRYGT 1 cut(s) 379
AgeI ACCGGT 1 cut(s) 90
AgsI TTSAA 4 cut(s) 179, 277, 421, 506
AhlI ACTAGT 1 cut(s) 332
AjnI CCWGG 1 cut(s) 495
AluBI AGCT 1 cut(s) 613
AluI AGCT 1 cut(s) 613
Alw21I GWGCWC 1 cut(s) 615
AlwI GGATC 4 cut(s) 313, 321, 334, 348
AoxI GGCC 1 cut(s) 130
ApeKI GCWGC 1 cut(s) 74
ApoI RAATTY 1 cut(s) 281
AsiGI ACCGGT 1 cut(s) 90
Asp700I GAANNNNTTC 1 cut(s) 510
AspS9I GGNCC 1 cut(s) 130
AsuC2I CCSGG 1 cut(s) 79
AsuHPI GGTGA 3 cut(s) 405, 485, 545
BamHI GGATCC 1 cut(s) 326
BanII GRGCYC 2 cut(s) 100, 615
BauI CACGAG 1 cut(s) 258
BbrPI CACGTG 1 cut(s) 380
BbsI GAAGAC 2 cut(s) 223, 563
Bbv12I GWGCWC 1 cut(s) 615
BbvI GCAGC 1 cut(s) 86
BccI CCATC 3 cut(s) 50, 201, 341
BciT130I CCWGG 1 cut(s) 497
BcnI CCSGG 1 cut(s) 79
BcuI ACTAGT 1 cut(s) 332
BfaI CTAG 1 cut(s) 333
BglII AGATCT 1 cut(s) 183
BisI GCNGC 2 cut(s) 75, 580
BlpI GCTNAGC 1 cut(s) 614
BlsI GCNGC 2 cut(s) 76, 581
BmcAI AGTACT 1 cut(s) 436
Bme1390I CCNGG 2 cut(s) 79, 497
BmgT120I GGNCC 1 cut(s) 130
BmiI GGNNCC 4 cut(s) 6, 99, 242, 328
BmrFI CCNGG 2 cut(s) 79, 497
BmsI GCATC 1 cut(s) 625
BpiI GAAGAC 2 cut(s) 223, 563
BpmI CTGGAG 1 cut(s) 150
Bpu1102I GCTNAGC 1 cut(s) 614
BpuEI CTTGAG 3 cut(s) 110, 236, 629
BpuMI CCSGG 1 cut(s) 79
BsaAI YACGTR 1 cut(s) 380
BsaWI WCCGGW 2 cut(s) 90, 295
Bsc4I CCNNNNNNNGG 2 cut(s) 302, 530
Bse118I RCCGGY 1 cut(s) 90
Bse1I ACTGG 1 cut(s) 432
BseBI CCWGG 1 cut(s) 497
BseGI GGATG 1 cut(s) 61
BseLI CCNNNNNNNGG 2 cut(s) 302, 530
BseMII CTCAG 2 cut(s) 558, 628
BseNI ACTGG 1 cut(s) 432
BseRI GAGGAG 3 cut(s) 400, 498, 501
BseXI GCAGC 1 cut(s) 86
BseYI CCCAGC 1 cut(s) 39
BshFI GGCC 1 cut(s) 132
BshTI ACCGGT 1 cut(s) 90
BsiHKAI GWGCWC 1 cut(s) 615
BsiSI CCGG 3 cut(s) 78, 91, 296
BslFI GGGAC 1 cut(s) 94
BslI CCNNNNNNNGG 2 cut(s) 302, 530
BsmFI GGGAC 1 cut(s) 94
BsnI GGCC 1 cut(s) 132
Bsp1286I GDGCHC 2 cut(s) 100, 615
Bsp143I GATC 8 cut(s) 183, 213, 305, 313, 326, 353, 361, 490
Bsp1720I GCTNAGC 1 cut(s) 614
BspACI CCGC 2 cut(s) 107, 579
BspANI GGCC 1 cut(s) 132
BspCNI CTCAG 2 cut(s) 559, 627
BspLI GGNNCC 4 cut(s) 6, 99, 242, 328
BspPI GGATC 4 cut(s) 313, 321, 334, 348
BsrFI RCCGGY 1 cut(s) 90
BsrI ACTGG 1 cut(s) 432
BssAI RCCGGY 1 cut(s) 90
BssMI GATC 8 cut(s) 183, 213, 305, 313, 326, 353, 361, 490
BssSI CACGAG 1 cut(s) 258
Bst2BI CACGAG 1 cut(s) 258
Bst2UI CCWGG 1 cut(s) 497
Bst4CI ACNGT 1 cut(s) 204
BstBAI YACGTR 1 cut(s) 380
BstDEI CTNAG 4 cut(s) 116, 567, 614, 648
BstF5I GGATG 1 cut(s) 61
BstKTI GATC 8 cut(s) 186, 216, 308, 316, 329, 356, 364, 493
BstMBI GATC 8 cut(s) 183, 213, 305, 313, 326, 353, 361, 490
BstMWI GCNNNNNNNGC 2 cut(s) 585, 644
BstNI CCWGG 1 cut(s) 497
BstSCI CCNGG 2 cut(s) 77, 495
BstV1I GCAGC 1 cut(s) 86
BstV2I GAAGAC 2 cut(s) 223, 563
BstX2I RGATCY 4 cut(s) 183, 305, 326, 353
BstYI RGATCY 4 cut(s) 183, 305, 326, 353
BsuRI GGCC 1 cut(s) 132
BtgZI GCGATG 1 cut(s) 603
BtsCI GGATG 1 cut(s) 61
Cfr10I RCCGGY 1 cut(s) 90
Cfr13I GGNCC 1 cut(s) 130
Csp6I GTAC 2 cut(s) 157, 435
CspAI ACCGGT 1 cut(s) 90
CviAII CATG 5 cut(s) 472, 526, 530, 553, 643
CviJI RGCY 9 cut(s) 77, 98, 132, 257, 387, 582, 613, 618, 647
CviKI_1 RGCY 9 cut(s) 77, 98, 132, 257, 387, 582, 613, 618, 647
CviQI GTAC 2 cut(s) 157, 435
DdeI CTNAG 4 cut(s) 116, 567, 614, 648
DpnI GATC 8 cut(s) 185, 215, 307, 315, 328, 355, 363, 492
DpnII GATC 8 cut(s) 183, 213, 305, 313, 326, 353, 361, 490
DrdI GACNNNNNNGTC 1 cut(s) 227
DseDI GACNNNNNNGTC 1 cut(s) 227
Ecl136II GAGCTC 1 cut(s) 613
Eco24I GRGCYC 2 cut(s) 100, 615
Eco53kI GAGCTC 1 cut(s) 613
Eco72I CACGTG 1 cut(s) 380
EcoICRI GAGCTC 1 cut(s) 613
EcoO109I RGGNCCY 1 cut(s) 130
EcoRII CCWGG 1 cut(s) 495
EcoT22I ATGCAT 1 cut(s) 531
EcoT38I GRGCYC 2 cut(s) 100, 615
FaeI CATG 5 cut(s) 475, 529, 533, 556, 646
FaqI GGGAC 1 cut(s) 94
FatI CATG 5 cut(s) 471, 525, 529, 552, 642
Fnu4HI GCNGC 2 cut(s) 75, 580
FokI GGATG 1 cut(s) 68
FriOI GRGCYC 2 cut(s) 100, 615
Fsp4HI GCNGC 2 cut(s) 75, 580
FspBI CTAG 1 cut(s) 333
GluI GCNGC 2 cut(s) 75, 580
GsaI CCCAGC 1 cut(s) 43
GsuI CTGGAG 1 cut(s) 150
HaeIII GGCC 1 cut(s) 132
HapII CCGG 3 cut(s) 78, 91, 296
Hin1II CATG 5 cut(s) 475, 529, 533, 556, 646
HincII GTYRAC 1 cut(s) 397
HindII GTYRAC 1 cut(s) 397
HinfI GANTC 3 cut(s) 120, 175, 593
HpaII CCGG 3 cut(s) 78, 91, 296
HphI GGTGA 3 cut(s) 405, 485, 545
Hpy166II GTNNAC 1 cut(s) 397
Hpy188I TCNGA 3 cut(s) 198, 288, 568
Hpy188III TCNNGA 5 cut(s) 167, 179, 244, 260, 311
Hpy8I GTNNAC 1 cut(s) 397
HpyAV CCTTC 3 cut(s) 271, 427, 521
HpyCH4III ACNGT 1 cut(s) 204
HpyCH4IV ACGT 3 cut(s) 228, 291, 379
HpyCH4V TGCA 3 cut(s) 19, 529, 638
HpyF10VI GCNNNNNNNGC 2 cut(s) 585, 644
HpyF3I CTNAG 4 cut(s) 116, 567, 614, 648
HpySE526I ACGT 3 cut(s) 228, 291, 379
Hsp92II CATG 5 cut(s) 475, 529, 533, 556, 646
Kzo9I GATC 8 cut(s) 183, 213, 305, 313, 326, 353, 361, 490
LmnI GCTCC 1 cut(s) 103
Lsp1109I GCAGC 1 cut(s) 86
LweI GCATC 1 cut(s) 625
MaeI CTAG 1 cut(s) 333
MaeII ACGT 3 cut(s) 228, 291, 379
MaeIII GTNAC 1 cut(s) 375
MalI GATC 8 cut(s) 185, 215, 307, 315, 328, 355, 363, 492
MboI GATC 8 cut(s) 183, 213, 305, 313, 326, 353, 361, 490
MboII GAAGA 2 cut(s) 223, 568
MflI RGATCY 4 cut(s) 183, 305, 326, 353
MhlI GDGCHC 2 cut(s) 100, 615
MluCI AATT 2 cut(s) 281, 319
MlyI GAGTC 1 cut(s) 587
Mph1103I ATGCAT 1 cut(s) 531
MroXI GAANNNNTTC 1 cut(s) 510
MseI TTAA 1 cut(s) 153
MspI CCGG 3 cut(s) 78, 91, 296
MspR9I CCNGG 2 cut(s) 79, 497
MvaI CCWGG 1 cut(s) 497
MwoI GCNNNNNNNGC 2 cut(s) 585, 644
NciI CCSGG 1 cut(s) 79
NdeII GATC 8 cut(s) 183, 213, 305, 313, 326, 353, 361, 490
NlaIII CATG 5 cut(s) 475, 529, 533, 556, 646
NlaIV GGNNCC 4 cut(s) 6, 99, 242, 328
NmuCI GTSAC 1 cut(s) 375
NsiI ATGCAT 1 cut(s) 531
PdmI GAANNNNTTC 1 cut(s) 510
PfeI GAWTC 2 cut(s) 120, 175
PinAI ACCGGT 1 cut(s) 90
PkrI GCNGC 2 cut(s) 76, 581
PleI GAGTC 1 cut(s) 587
PmaCI CACGTG 1 cut(s) 380
PmlI CACGTG 1 cut(s) 380
PpsI GAGTC 1 cut(s) 587
Ppu21I YACGTR 1 cut(s) 380
Psp124BI GAGCTC 1 cut(s) 615
Psp1406I AACGTT 1 cut(s) 291
Psp6I CCWGG 1 cut(s) 495
PspCI CACGTG 1 cut(s) 380
PspFI CCCAGC 1 cut(s) 39
PspGI CCWGG 1 cut(s) 495
PspN4I GGNNCC 4 cut(s) 6, 99, 242, 328
PspPI GGNCC 1 cut(s) 130
PsuI RGATCY 4 cut(s) 183, 305, 326, 353
RsaI GTAC 2 cut(s) 158, 436
RsaNI GTAC 2 cut(s) 157, 435
SacI GAGCTC 1 cut(s) 615
SaqAI TTAA 1 cut(s) 153
SatI GCNGC 2 cut(s) 75, 580
Sau3AI GATC 8 cut(s) 183, 213, 305, 313, 326, 353, 361, 490
Sau96I GGNCC 1 cut(s) 130
ScaI AGTACT 1 cut(s) 436
SchI GAGTC 1 cut(s) 587
ScrFI CCNGG 2 cut(s) 79, 497
SduI GDGCHC 2 cut(s) 100, 615
SetI ASST 7 cut(s) 231, 252, 294, 382, 443, 577, 615
SfaNI GCATC 1 cut(s) 625
SmlI CTYRAG 3 cut(s) 125, 251, 608
SmoI CTYRAG 3 cut(s) 125, 251, 608
SpeI ACTAGT 1 cut(s) 332
Sse9I AATT 2 cut(s) 281, 319
SsiI CCGC 2 cut(s) 107, 579
SspMI CTAG 1 cut(s) 333
SstI GAGCTC 1 cut(s) 615
StyD4I CCNGG 2 cut(s) 77, 495
TaaI ACNGT 1 cut(s) 204
TaiI ACGT 3 cut(s) 231, 294, 382
TaqI TCGA 3 cut(s) 51, 216, 312
TasI AATT 2 cut(s) 281, 319
TatI WGTACW 1 cut(s) 434
TauI GCSGC 1 cut(s) 582
TfiI GAWTC 2 cut(s) 120, 175
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TseFI GTSAC 1 cut(s) 375
TseI GCWGC 1 cut(s) 74
Tsp45I GTSAC 1 cut(s) 375
TspDTI ATGAA 2 cut(s) 460, 569
TspGWI ACGGA 1 cut(s) 645
XapI RAATTY 1 cut(s) 281
XmnI GAANNNNTTC 1 cut(s) 510
XspI CTAG 1 cut(s) 333
ZrmI AGTACT 1 cut(s) 436
Zsp2I ATGCAT 1 cut(s) 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.