Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000180

Physical Location & Seq

Genomic Coordinates Reverse (-)

9488714 .. 9490006

Gene Structure 1293 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ42783

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGAACCACGAACTCTGCAACTGATGGAGCTTCAAACCCAACAACAGACGGAACTACAAGCCCAGCAACTCACCGAGGAGGGAGGAAGCAACCAAGTAGCCGGAAGTAGTGCCAACACACCTATCAGGCCGACGACTATCCGGTGGACTCCTACACCAGCTCAACTAAGAATCCTTCAGGGGCTCTACTACGACAAGGGTCACAAGAACCCAACTCCAGAGCAGATTCAAGAGATCTGCCTTCATCTGAAACCGTATGGGCAGATCGAGGACAAGAACGTCTTCTTTTGGTTCCAGAACCTCAAGGCTCGTGACAGGCAGAAGTTGAAGGAATTTCGGAAAGTTCGGGTTGGTGGATCTCTCGATCTAAATTTTGGATCCACAAGTTCTACTGATGGTGGCAGATCCATCGATCTCAACTTCGGTTCCACAGATTCCACTGGTGATGATGGATCGATCGATCTAACCCTTGGGTTACGATCATTCATGGAACAACGAGGAGGAGATCACCAGGAGGTCGAGACTCTTCCTCTGTTCCCTGAGCACGGTGAAAACATCATTGGTAATCCGAAGACTACATCCGAGGGCGGTAGCTCATTTGGTTACTATTCCGGTGTCTCAGGCGGTTACAACAGTGGCTCTCCTGTTTCTCTTGAGCTCAGCCTCAACCCATCCGGAGCCACTGATCTAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

231

Amino Acids

25.3

Weight (kDa)

5.04

Isoelectric Point (pI)

48.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	48 - 107	2.4e-10	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000180)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c19g0499991 RchiOBHm_Chr0c19g0500021 RchiOBHm_Chr0c19g0500131 RchiOBHm_Chr0c31g0501321 RchiOBHm_Chr0c31g0501441 RchiOBHm_Chr1g0365611 RchiOBHm_Chr1g0366061 RchiOBHm_Chr1g0367951 RchiOBHm_Chr1g0369471 RchiOBHm_Chr1g0377271 RchiOBHm_Chr1g0379021 RchiOBHm_Chr1g0379461 RchiOBHm_Chr1g0381431 RchiOBHm_Chr1g0383551 RchiOBHm_Chr1g0383621 RchiOBHm_Chr2g0120951 RchiOBHm_Chr2g0121321 RchiOBHm_Chr2g0121381 RchiOBHm_Chr2g0121801 RchiOBHm_Chr2g0121861 RchiOBHm_Chr2g0122211 RchiOBHm_Chr2g0122471 RchiOBHm_Chr2g0122511 RchiOBHm_Chr2g0122751 RchiOBHm_Chr2g0123361 RchiOBHm_Chr2g0124071 RchiOBHm_Chr2g0124341 RchiOBHm_Chr2g0124361 RchiOBHm_Chr2g0124511 RchiOBHm_Chr2g0124641 RchiOBHm_Chr2g0125051 RchiOBHm_Chr2g0125111 RchiOBHm_Chr2g0125641 RchiOBHm_Chr2g0125871 RchiOBHm_Chr2g0125901 RchiOBHm_Chr2g0126011 RchiOBHm_Chr2g0126291 RchiOBHm_Chr2g0126341 RchiOBHm_Chr2g0126611 RchiOBHm_Chr2g0126671 RchiOBHm_Chr2g0126701 RchiOBHm_Chr2g0127021 RchiOBHm_Chr2g0127071 RchiOBHm_Chr2g0127361 RchiOBHm_Chr2g0127691 RchiOBHm_Chr2g0128041 RchiOBHm_Chr2g0128051 RchiOBHm_Chr2g0128061 RchiOBHm_Chr2g0128141 RchiOBHm_Chr2g0128171 RchiOBHm_Chr2g0128181 RchiOBHm_Chr2g0128551 RchiOBHm_Chr2g0128991 RchiOBHm_Chr2g0130061 RchiOBHm_Chr2g0130391 RchiOBHm_Chr2g0130631 RchiOBHm_Chr2g0130921 RchiOBHm_Chr2g0132731 RchiOBHm_Chr2g0133461 RchiOBHm_Chr2g0133921 RchiOBHm_Chr2g0134031 RchiOBHm_Chr2g0134281 RchiOBHm_Chr2g0134351 RchiOBHm_Chr2g0135501 RchiOBHm_Chr2g0135821 RchiOBHm_Chr2g0135931 RchiOBHm_Chr2g0137501 RchiOBHm_Chr2g0139141 RchiOBHm_Chr2g0139511 RchiOBHm_Chr2g0142411 RchiOBHm_Chr2g0143261 RchiOBHm_Chr2g0144171 RchiOBHm_Chr2g0144741 RchiOBHm_Chr2g0144841 RchiOBHm_Chr2g0145021 RchiOBHm_Chr2g0145831 RchiOBHm_Chr2g0145881 RchiOBHm_Chr2g0146081 RchiOBHm_Chr2g0146141 RchiOBHm_Chr2g0146671 RchiOBHm_Chr2g0149001 RchiOBHm_Chr2g0151811 RchiOBHm_Chr2g0151821 RchiOBHm_Chr2g0151831 RchiOBHm_Chr2g0152051 RchiOBHm_Chr2g0154791 RchiOBHm_Chr2g0155541 RchiOBHm_Chr2g0160791 RchiOBHm_Chr2g0161631 RchiOBHm_Chr2g0162151 RchiOBHm_Chr2g0162751 RchiOBHm_Chr2g0166561 RchiOBHm_Chr2g0166751 RchiOBHm_Chr2g0168891 RchiOBHm_Chr2g0170211 RchiOBHm_Chr2g0170781 RchiOBHm_Chr2g0172831 RchiOBHm_Chr2g0174791 RchiOBHm_Chr3g0448081 RchiOBHm_Chr3g0449761 RchiOBHm_Chr3g0453291 RchiOBHm_Chr3g0456271 RchiOBHm_Chr3g0456461 RchiOBHm_Chr3g0458351 RchiOBHm_Chr3g0461411 RchiOBHm_Chr3g0461511 RchiOBHm_Chr3g0463871 RchiOBHm_Chr3g0467841 RchiOBHm_Chr3g0470081 RchiOBHm_Chr3g0470571 RchiOBHm_Chr7g0187061 RchiOBHm_Chr7g0187461 RchiOBHm_Chr7g0187681 RchiOBHm_Chr7g0189901 RchiOBHm_Chr7g0190271 RchiOBHm_Chr7g0193451 RchiOBHm_Chr7g0194081 RchiOBHm_Chr7g0195771 RchiOBHm_Chr7g0196301 RchiOBHm_Chr7g0196911
rosa_multiflora	Rmu_sc0000236.1_g000047 Rmu_sc0000284.1_g000007 Rmu_sc0000288.1_g000006 Rmu_sc0000507.1_g000017 Rmu_sc0000580.1_g000015 Rmu_sc0000663.1_g000011 Rmu_sc0000675.1_g000024 Rmu_sc0000693.1_g000072 Rmu_sc0000779.1_g000005 Rmu_sc0000851.1_g000015 Rmu_sc0000962.1_g000001 Rmu_sc0001493.1_g000055 Rmu_sc0001669.1_g000025 Rmu_sc0001891.1_g000051 Rmu_sc0001926.1_g000007 Rmu_sc0002082.1_g000025 Rmu_sc0002141.1_g000001 Rmu_sc0002141.1_g000004 Rmu_sc0002414.1_g000012 Rmu_sc0002557.1_g000022 Rmu_sc0002709.1_g000038 Rmu_sc0002897.1_g000004 Rmu_sc0002934.1_g000055 Rmu_sc0003692.1_g000017 Rmu_sc0004283.1_g000068 Rmu_sc0004598.1_g000010 Rmu_sc0004614.1_g000004 Rmu_sc0004805.1_g000006 Rmu_sc0005142.1_g000041 Rmu_sc0005777.1_g000001 Rmu_sc0006420.1_g000019 Rmu_sc0006803.1_g000016 Rmu_sc0007034.1_g000015 Rmu_sc0008079.1_g000017 Rmu_sc0008148.1_g000040 Rmu_sc0008608.1_g000007 Rmu_sc0008675.1_g000001 Rmu_sc0009663.1_g000001 Rmu_sc0010188.1_g000003 Rmu_sc0010739.1_g000005 Rmu_sc0016265.1_g000001 Rmu_sc0031757.1_g000001 Rmu_ssc0000087.1_g000024 Rmu_ssc0000438.1_g000029
rosa_roxburghii	Rroxscaffold_1G00003350
rosa_rugosa	Rorug03G0248400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	278
AccIII	TCCGGA	1 cut(s)	674
AciI	CCGC	2 cut(s)	588, 624
AclWI	GGATC	5 cut(s)	364, 372, 385, 399, 460
AcsI	RAATTY	2 cut(s)	332, 370
AcuI	CTGAAG	1 cut(s)	161
AfiI	CCNNNNNNNGG	1 cut(s)	545
AgsI	TTSAA	3 cut(s)	35, 230, 328
AjnI	CCWGG	1 cut(s)	510
AjuI	GAANNNNNNNTTGG	2 cut(s)	543, 575
AluBI	AGCT	5 cut(s)	31, 161, 594, 658, 692
AluI	AGCT	5 cut(s)	31, 161, 594, 658, 692
Alw21I	GWGCWC	2 cut(s)	546, 660
Alw26I	GTCTC	2 cut(s)	515, 622
AlwI	GGATC	5 cut(s)	364, 372, 385, 399, 460
Aor13HI	TCCGGA	1 cut(s)	674
AoxI	GGCC	1 cut(s)	128
ApoI	RAATTY	2 cut(s)	332, 370
Asp700I	GAANNNNTTC	1 cut(s)	281
AsuHPI	GGTGA	4 cut(s)	64, 455, 500, 560
BamHI	GGATCC	1 cut(s)	377
BanII	GRGCYC	2 cut(s)	186, 660
BauI	CACGAG	1 cut(s)	309
BbsI	GAAGAC	2 cut(s)	274, 578
Bbv12I	GWGCWC	2 cut(s)	546, 660
BccI	CCATC	5 cut(s)	19, 389, 416, 443, 679
BcgI	CGANNNNNNTGC	2 cut(s)	391, 425
BciT130I	CCWGG	1 cut(s)	512
BcoDI	GTCTC	2 cut(s)	515, 622
BfaI	CTAG	1 cut(s)	689
BglII	AGATCT	1 cut(s)	234
BlpI	GCTNAGC	1 cut(s)	659
Bme1390I	CCNGG	1 cut(s)	512
BmiI	GGNNCC	5 cut(s)	6, 293, 379, 427, 679
BmrFI	CCNGG	1 cut(s)	512
BoxI	GACNNNNGTC	1 cut(s)	198
BpiI	GAAGAC	2 cut(s)	274, 578
BpmI	CTGGAG	1 cut(s)	201
Bpu10I	CCTNAGC	1 cut(s)	540
Bpu1102I	GCTNAGC	1 cut(s)	659
BpuEI	CTTGAG	2 cut(s)	287, 674
Bsa29I	ATCGAT	3 cut(s)	411, 455, 459
BsaJI	CCNNGG	3 cut(s)	75, 469, 582
BsaWI	WCCGGW	3 cut(s)	141, 611, 674
Bsc4I	CCNNNNNNNGG	1 cut(s)	545
Bse1I	ACTGG	1 cut(s)	445
BseAI	TCCGGA	1 cut(s)	674
BseBI	CCWGG	1 cut(s)	512
BseCI	ATCGAT	3 cut(s)	411, 455, 459
BseDI	CCNNGG	3 cut(s)	75, 469, 582
BseGI	GGATG	2 cut(s)	578, 671
BseLI	CCNNNNNNNGG	1 cut(s)	545
BseMII	CTCAG	3 cut(s)	531, 633, 673
BseNI	ACTGG	1 cut(s)	445
BseRI	GAGGAG	3 cut(s)	92, 513, 516
BseYI	CCCAGC	1 cut(s)	63
Bsh1285I	CGRYCG	1 cut(s)	459
BshFI	GGCC	1 cut(s)	130
BshVI	ATCGAT	3 cut(s)	411, 455, 459
BsiEI	CGRYCG	1 cut(s)	459
BsiHKAI	GWGCWC	2 cut(s)	546, 660
BsiSI	CCGG	4 cut(s)	102, 142, 612, 675
BslI	CCNNNNNNNGG	1 cut(s)	545
BsmAI	GTCTC	2 cut(s)	515, 622
BsnI	GGCC	1 cut(s)	130
Bsp1286I	GDGCHC	3 cut(s)	186, 546, 660
Bsp13I	TCCGGA	1 cut(s)	674
Bsp1720I	GCTNAGC	1 cut(s)	659
BspACI	CCGC	2 cut(s)	588, 624
BspANI	GGCC	1 cut(s)	130
BspCNI	CTCAG	3 cut(s)	532, 632, 672
BspDI	ATCGAT	3 cut(s)	411, 455, 459
BspEI	TCCGGA	1 cut(s)	674
BspLI	GGNNCC	5 cut(s)	6, 293, 379, 427, 679
BspPI	GGATC	5 cut(s)	364, 372, 385, 399, 460
BsrI	ACTGG	1 cut(s)	445
BssECI	CCNNGG	3 cut(s)	75, 469, 582
BssSI	CACGAG	1 cut(s)	309
BssT1I	CCWWGG	1 cut(s)	469
Bst2BI	CACGAG	1 cut(s)	309
Bst2UI	CCWGG	1 cut(s)	512
Bst4CI	ACNGT	3 cut(s)	255, 548, 635
Bst6I	CTCTTC	1 cut(s)	531
BstDEI	CTNAG	5 cut(s)	167, 540, 619, 659, 693
BstF5I	GGATG	2 cut(s)	578, 671
BstMAI	GTCTC	2 cut(s)	515, 622
BstMCI	CGRYCG	1 cut(s)	459
BstNI	CCWGG	1 cut(s)	512
BstPAI	GACNNNNGTC	1 cut(s)	198
BstSCI	CCNGG	1 cut(s)	510
BstV2I	GAAGAC	2 cut(s)	274, 578
BstX2I	RGATCY	4 cut(s)	234, 356, 377, 404
BstYI	RGATCY	4 cut(s)	234, 356, 377, 404
Bsu15I	ATCGAT	3 cut(s)	411, 455, 459
BsuRI	GGCC	1 cut(s)	130
BsuTUI	ATCGAT	3 cut(s)	411, 455, 459
BtsCI	GGATG	2 cut(s)	578, 671
BtsIMutI	CAGTG	3 cut(s)	438, 640, 681
ClaI	ATCGAT	3 cut(s)	411, 455, 459
CviAII	CATG	1 cut(s)	487
DdeI	CTNAG	5 cut(s)	167, 540, 619, 659, 693
DrdI	GACNNNNNNGTC	1 cut(s)	278
DseDI	GACNNNNNNGTC	1 cut(s)	278
Eam1104I	CTCTTC	1 cut(s)	531
EarI	CTCTTC	1 cut(s)	531
Ecl136II	GAGCTC	1 cut(s)	658
Eco130I	CCWWGG	1 cut(s)	469
Eco24I	GRGCYC	2 cut(s)	186, 660
Eco53kI	GAGCTC	1 cut(s)	658
Eco57I	CTGAAG	1 cut(s)	161
EcoICRI	GAGCTC	1 cut(s)	658
EcoRII	CCWGG	1 cut(s)	510
EcoT14I	CCWWGG	1 cut(s)	469
EcoT38I	GRGCYC	2 cut(s)	186, 660
ErhI	CCWWGG	1 cut(s)	469
FaeI	CATG	1 cut(s)	490
FaiI	YATR	2 cut(s)	258, 488
FalI	AAGNNNNNCTT	2 cut(s)	266, 298
FatI	CATG	1 cut(s)	486
FokI	GGATG	2 cut(s)	565, 658
FriOI	GRGCYC	2 cut(s)	186, 660
FspBI	CTAG	1 cut(s)	689
GsaI	CCCAGC	1 cut(s)	67
GsuI	CTGGAG	1 cut(s)	201
HaeIII	GGCC	1 cut(s)	130
HapII	CCGG	4 cut(s)	102, 142, 612, 675
Hin1II	CATG	1 cut(s)	490
HinfI	GANTC	5 cut(s)	148, 171, 226, 434, 523
HpaII	CCGG	4 cut(s)	102, 142, 612, 675
HphI	GGTGA	4 cut(s)	64, 455, 500, 560
Hpy166II	GTNNAC	1 cut(s)	147
Hpy188I	TCNGA	4 cut(s)	249, 339, 570, 583
Hpy188III	TCNNGA	8 cut(s)	218, 230, 295, 311, 362, 520, 653, 675
Hpy8I	GTNNAC	1 cut(s)	147
Hpy99I	CGWCG	1 cut(s)	136
HpyAV	CCTTC	3 cut(s)	185, 251, 322
HpyCH4III	ACNGT	3 cut(s)	255, 548, 635
HpyCH4IV	ACGT	1 cut(s)	279
HpyCH4V	TGCA	1 cut(s)	19
HpyF3I	CTNAG	5 cut(s)	167, 540, 619, 659, 693
HpySE526I	ACGT	1 cut(s)	279
Hsp92II	CATG	1 cut(s)	490
Kpn2I	TCCGGA	1 cut(s)	674
LmnI	GCTCC	2 cut(s)	28, 677
MaeI	CTAG	1 cut(s)	689
MaeII	ACGT	1 cut(s)	279
MaeIII	GTNAC	5 cut(s)	200, 311, 474, 602, 626
MboII	GAAGA	3 cut(s)	274, 518, 583
MflI	RGATCY	4 cut(s)	234, 356, 377, 404
MhlI	GDGCHC	3 cut(s)	186, 546, 660
MluCI	AATT	2 cut(s)	332, 370
MlyI	GAGTC	2 cut(s)	142, 517
MroI	TCCGGA	1 cut(s)	674
MroXI	GAANNNNTTC	1 cut(s)	281
MspI	CCGG	4 cut(s)	102, 142, 612, 675
MspR9I	CCNGG	1 cut(s)	512
MvaI	CCWGG	1 cut(s)	512
NlaIII	CATG	1 cut(s)	490
NlaIV	GGNNCC	5 cut(s)	6, 293, 379, 427, 679
NmuCI	GTSAC	2 cut(s)	200, 311
PdmI	GAANNNNTTC	1 cut(s)	281
PfeI	GAWTC	3 cut(s)	171, 226, 434
Ple19I	CGATCG	1 cut(s)	459
PleI	GAGTC	2 cut(s)	142, 517
PpsI	GAGTC	2 cut(s)	142, 517
PshAI	GACNNNNGTC	1 cut(s)	198
Psp124BI	GAGCTC	1 cut(s)	660
Psp6I	CCWGG	1 cut(s)	510
PspFI	CCCAGC	1 cut(s)	63
PspGI	CCWGG	1 cut(s)	510
PspN4I	GGNNCC	5 cut(s)	6, 293, 379, 427, 679
PsuI	RGATCY	4 cut(s)	234, 356, 377, 404
PvuI	CGATCG	1 cut(s)	459
SacI	GAGCTC	1 cut(s)	660
SchI	GAGTC	2 cut(s)	142, 517
ScrFI	CCNGG	1 cut(s)	512
SduI	GDGCHC	3 cut(s)	186, 546, 660
SetI	ASST	9 cut(s)	33, 124, 163, 282, 303, 519, 596, 660, 694
SmlI	CTYRAG	2 cut(s)	302, 653
SmoI	CTYRAG	2 cut(s)	302, 653
Sse9I	AATT	2 cut(s)	332, 370
SsiI	CCGC	2 cut(s)	588, 624
SspMI	CTAG	1 cut(s)	689
SstI	GAGCTC	1 cut(s)	660
StyD4I	CCNGG	1 cut(s)	510
StyI	CCWWGG	1 cut(s)	469
TaaI	ACNGT	3 cut(s)	255, 548, 635
TaiI	ACGT	1 cut(s)	282
TaqI	TCGA	6 cut(s)	267, 363, 411, 455, 459, 519
TasI	AATT	2 cut(s)	332, 370
TfiI	GAWTC	3 cut(s)	171, 226, 434
TscAI	CASTG	3 cut(s)	445, 640, 688
TseFI	GTSAC	2 cut(s)	200, 311
Tsp45I	GTSAC	2 cut(s)	200, 311
TspDTI	ATGAA	2 cut(s)	233, 475
TspGWI	ACGGA	1 cut(s)	65
TspRI	CASTG	3 cut(s)	445, 640, 688
XapI	RAATTY	2 cut(s)	332, 370
XmnI	GAANNNNTTC	1 cut(s)	281
XspI	CTAG	1 cut(s)	689

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.