Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0031757.1

Orthogroup ID

OG0000180

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 601

Gene Structure 601 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0031757.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 446 bp

aggtgctttactatgacaaggatcttaggtacccaactccagagcagattcaagatatctgtctccatctgaaacagtatgaccagattgaggacaagaacgtcttcttttggttccagaacctcaaagctcgagagaagcaaaagatgaggttaattcagaacgttcgggttggtggatctctcgatgtcaactttggatccactagttctactgatgatggaggacaaactttcatggaacaacgaggaggagatcaccaggaggttgaaactcttcctctgttccccgtacacggtgaggacgtacttggtaacccgaagactacttccgaggaaggtagcacatatggttactattccggtggctcgggcggttacaacagtggctctcacgtttctcttgagcttagcctaaacccatccggagccgctgatttggcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

147

Amino Acids

16.33

Weight (kDa)

4.75

Isoelectric Point (pI)

39.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000180)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c19g0499991 RchiOBHm_Chr0c19g0500021 RchiOBHm_Chr0c19g0500131 RchiOBHm_Chr0c31g0501321 RchiOBHm_Chr0c31g0501441 RchiOBHm_Chr1g0365611 RchiOBHm_Chr1g0366061 RchiOBHm_Chr1g0367951 RchiOBHm_Chr1g0369471 RchiOBHm_Chr1g0377271 RchiOBHm_Chr1g0379021 RchiOBHm_Chr1g0379461 RchiOBHm_Chr1g0381431 RchiOBHm_Chr1g0383551 RchiOBHm_Chr1g0383621 RchiOBHm_Chr2g0120951 RchiOBHm_Chr2g0121321 RchiOBHm_Chr2g0121381 RchiOBHm_Chr2g0121801 RchiOBHm_Chr2g0121861 RchiOBHm_Chr2g0122211 RchiOBHm_Chr2g0122471 RchiOBHm_Chr2g0122511 RchiOBHm_Chr2g0122751 RchiOBHm_Chr2g0123361 RchiOBHm_Chr2g0124071 RchiOBHm_Chr2g0124341 RchiOBHm_Chr2g0124361 RchiOBHm_Chr2g0124511 RchiOBHm_Chr2g0124641 RchiOBHm_Chr2g0125051 RchiOBHm_Chr2g0125111 RchiOBHm_Chr2g0125641 RchiOBHm_Chr2g0125871 RchiOBHm_Chr2g0125901 RchiOBHm_Chr2g0126011 RchiOBHm_Chr2g0126291 RchiOBHm_Chr2g0126341 RchiOBHm_Chr2g0126611 RchiOBHm_Chr2g0126671 RchiOBHm_Chr2g0126701 RchiOBHm_Chr2g0127021 RchiOBHm_Chr2g0127071 RchiOBHm_Chr2g0127361 RchiOBHm_Chr2g0127691 RchiOBHm_Chr2g0128041 RchiOBHm_Chr2g0128051 RchiOBHm_Chr2g0128061 RchiOBHm_Chr2g0128141 RchiOBHm_Chr2g0128171 RchiOBHm_Chr2g0128181 RchiOBHm_Chr2g0128551 RchiOBHm_Chr2g0128991 RchiOBHm_Chr2g0130061 RchiOBHm_Chr2g0130391 RchiOBHm_Chr2g0130631 RchiOBHm_Chr2g0130921 RchiOBHm_Chr2g0132731 RchiOBHm_Chr2g0133461 RchiOBHm_Chr2g0133921 RchiOBHm_Chr2g0134031 RchiOBHm_Chr2g0134281 RchiOBHm_Chr2g0134351 RchiOBHm_Chr2g0135501 RchiOBHm_Chr2g0135821 RchiOBHm_Chr2g0135931 RchiOBHm_Chr2g0137501 RchiOBHm_Chr2g0139141 RchiOBHm_Chr2g0139511 RchiOBHm_Chr2g0142411 RchiOBHm_Chr2g0143261 RchiOBHm_Chr2g0144171 RchiOBHm_Chr2g0144741 RchiOBHm_Chr2g0144841 RchiOBHm_Chr2g0145021 RchiOBHm_Chr2g0145831 RchiOBHm_Chr2g0145881 RchiOBHm_Chr2g0146081 RchiOBHm_Chr2g0146141 RchiOBHm_Chr2g0146671 RchiOBHm_Chr2g0149001 RchiOBHm_Chr2g0151811 RchiOBHm_Chr2g0151821 RchiOBHm_Chr2g0151831 RchiOBHm_Chr2g0152051 RchiOBHm_Chr2g0154791 RchiOBHm_Chr2g0155541 RchiOBHm_Chr2g0160791 RchiOBHm_Chr2g0161631 RchiOBHm_Chr2g0162151 RchiOBHm_Chr2g0162751 RchiOBHm_Chr2g0166561 RchiOBHm_Chr2g0166751 RchiOBHm_Chr2g0168891 RchiOBHm_Chr2g0170211 RchiOBHm_Chr2g0170781 RchiOBHm_Chr2g0172831 RchiOBHm_Chr2g0174791 RchiOBHm_Chr3g0448081 RchiOBHm_Chr3g0449761 RchiOBHm_Chr3g0453291 RchiOBHm_Chr3g0456271 RchiOBHm_Chr3g0456461 RchiOBHm_Chr3g0458351 RchiOBHm_Chr3g0461411 RchiOBHm_Chr3g0461511 RchiOBHm_Chr3g0463871 RchiOBHm_Chr3g0467841 RchiOBHm_Chr3g0470081 RchiOBHm_Chr3g0470571 RchiOBHm_Chr7g0187061 RchiOBHm_Chr7g0187461 RchiOBHm_Chr7g0187681 RchiOBHm_Chr7g0189901 RchiOBHm_Chr7g0190271 RchiOBHm_Chr7g0193451 RchiOBHm_Chr7g0194081 RchiOBHm_Chr7g0195771 RchiOBHm_Chr7g0196301 RchiOBHm_Chr7g0196911
rosa_multiflora	Rmu_sc0000236.1_g000047 Rmu_sc0000284.1_g000007 Rmu_sc0000288.1_g000006 Rmu_sc0000507.1_g000017 Rmu_sc0000580.1_g000015 Rmu_sc0000663.1_g000011 Rmu_sc0000675.1_g000024 Rmu_sc0000693.1_g000072 Rmu_sc0000779.1_g000005 Rmu_sc0000851.1_g000015 Rmu_sc0000962.1_g000001 Rmu_sc0001493.1_g000055 Rmu_sc0001669.1_g000025 Rmu_sc0001891.1_g000051 Rmu_sc0001926.1_g000007 Rmu_sc0002082.1_g000025 Rmu_sc0002141.1_g000001 Rmu_sc0002141.1_g000004 Rmu_sc0002414.1_g000012 Rmu_sc0002557.1_g000022 Rmu_sc0002709.1_g000038 Rmu_sc0002897.1_g000004 Rmu_sc0002934.1_g000055 Rmu_sc0003692.1_g000017 Rmu_sc0004283.1_g000068 Rmu_sc0004598.1_g000010 Rmu_sc0004614.1_g000004 Rmu_sc0004805.1_g000006 Rmu_sc0005142.1_g000041 Rmu_sc0005777.1_g000001 Rmu_sc0006420.1_g000019 Rmu_sc0006803.1_g000016 Rmu_sc0007034.1_g000015 Rmu_sc0008079.1_g000017 Rmu_sc0008148.1_g000040 Rmu_sc0008608.1_g000007 Rmu_sc0008675.1_g000001 Rmu_sc0009663.1_g000001 Rmu_sc0010188.1_g000003 Rmu_sc0010739.1_g000005 Rmu_sc0016265.1_g000001 Rmu_sc0031757.1_g000001 Rmu_ssc0000087.1_g000024 Rmu_ssc0000438.1_g000029
rosa_roxburghii	Rroxscaffold_1G00003350
rosa_rugosa	Rorug03G0248400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	100
Acc65I	GGTACC	1 cut(s)	29
AccB1I	GGYRCC	1 cut(s)	29
AccIII	TCCGGA	1 cut(s)	424
AciI	CCGC	2 cut(s)	374, 431
AclI	AACGTT	1 cut(s)	164
AclWI	GGATC	4 cut(s)	29, 186, 194, 207
AfaI	GTAC	3 cut(s)	31, 293, 308
AfiI	CCNNNNNNNGG	2 cut(s)	90, 295
AgsI	TTSAA	2 cut(s)	52, 271
AhlI	ACTAGT	1 cut(s)	205
AjnI	CCWGG	1 cut(s)	260
AluBI	AGCT	2 cut(s)	130, 408
AluI	AGCT	2 cut(s)	130, 408
Alw26I	GTCTC	1 cut(s)	67
AlwI	GGATC	4 cut(s)	29, 186, 194, 207
Ama87I	CYCGRG	2 cut(s)	131, 369
Aor13HI	TCCGGA	1 cut(s)	424
Asp700I	GAANNNNTTC	2 cut(s)	103, 275
Asp718I	GGTACC	1 cut(s)	29
AsuHPI	GGTGA	2 cut(s)	250, 310
AvaI	CYCGRG	2 cut(s)	131, 369
BamHI	GGATCC	1 cut(s)	199
BanI	GGYRCC	1 cut(s)	29
BbsI	GAAGAC	2 cut(s)	96, 328
BccI	CCATC	3 cut(s)	74, 214, 429
BciT130I	CCWGG	1 cut(s)	262
BcoDI	GTCTC	1 cut(s)	67
BcuI	ACTAGT	1 cut(s)	205
BfaI	CTAG	1 cut(s)	206
BisI	GCNGC	1 cut(s)	431
BlpI	GCTNAGC	1 cut(s)	409
BlsI	GCNGC	1 cut(s)	432
Bme1390I	CCNGG	1 cut(s)	262
BmeT110I	CYCGRG	2 cut(s)	131, 369
BmiI	GGNNCC	4 cut(s)	31, 115, 201, 429
BmrFI	CCNGG	1 cut(s)	262
BpiI	GAAGAC	2 cut(s)	96, 328
BpmI	CTGGAG	1 cut(s)	23
Bpu1102I	GCTNAGC	1 cut(s)	409
BpuEI	CTTGAG	1 cut(s)	424
BsaJI	CCNNGG	1 cut(s)	332
BsaWI	WCCGGW	2 cut(s)	361, 424
Bsc4I	CCNNNNNNNGG	2 cut(s)	90, 295
BseAI	TCCGGA	1 cut(s)	424
BseBI	CCWGG	1 cut(s)	262
BseDI	CCNNGG	1 cut(s)	332
BseGI	GGATG	1 cut(s)	421
BseLI	CCNNNNNNNGG	2 cut(s)	90, 295
BseRI	GAGGAG	2 cut(s)	263, 266
BshNI	GGYRCC	1 cut(s)	29
BsiHKCI	CYCGRG	2 cut(s)	131, 369
BsiSI	CCGG	2 cut(s)	362, 425
BslI	CCNNNNNNNGG	2 cut(s)	90, 295
BsmAI	GTCTC	1 cut(s)	67
BsoBI	CYCGRG	2 cut(s)	131, 369
Bsp13I	TCCGGA	1 cut(s)	424
Bsp143I	GATC	4 cut(s)	21, 178, 199, 255
Bsp1720I	GCTNAGC	1 cut(s)	409
BspACI	CCGC	2 cut(s)	374, 431
BspEI	TCCGGA	1 cut(s)	424
BspLI	GGNNCC	4 cut(s)	31, 115, 201, 429
BspPI	GGATC	4 cut(s)	29, 186, 194, 207
BspT107I	GGYRCC	1 cut(s)	29
BssECI	CCNNGG	1 cut(s)	332
BssMI	GATC	4 cut(s)	21, 178, 199, 255
Bst2UI	CCWGG	1 cut(s)	262
Bst4CI	ACNGT	3 cut(s)	77, 298, 385
Bst6I	CTCTTC	1 cut(s)	281
BstDEI	CTNAG	3 cut(s)	25, 409, 443
BstEII	GGTNACC	1 cut(s)	313
BstF5I	GGATG	1 cut(s)	421
BstKTI	GATC	4 cut(s)	24, 181, 202, 258
BstMAI	GTCTC	1 cut(s)	67
BstMBI	GATC	4 cut(s)	21, 178, 199, 255
BstMWI	GCNNNNNNNGC	1 cut(s)	439
BstNI	CCWGG	1 cut(s)	262
BstPI	GGTNACC	1 cut(s)	313
BstSCI	CCNGG	1 cut(s)	260
BstV2I	GAAGAC	2 cut(s)	96, 328
BstX2I	RGATCY	3 cut(s)	21, 178, 199
BstYI	RGATCY	3 cut(s)	21, 178, 199
BtsCI	GGATG	1 cut(s)	421
BtsIMutI	CAGTG	1 cut(s)	390
Csp6I	GTAC	3 cut(s)	30, 292, 307
CviAII	CATG	1 cut(s)	237
CviJI	RGCY	7 cut(s)	130, 368, 389, 408, 413, 430, 442
CviKI_1	RGCY	7 cut(s)	130, 368, 389, 408, 413, 430, 442
CviQI	GTAC	3 cut(s)	30, 292, 307
DdeI	CTNAG	3 cut(s)	25, 409, 443
DpnI	GATC	4 cut(s)	23, 180, 201, 257
DpnII	GATC	4 cut(s)	21, 178, 199, 255
DrdI	GACNNNNNNGTC	1 cut(s)	100
DseDI	GACNNNNNNGTC	1 cut(s)	100
Eam1104I	CTCTTC	1 cut(s)	281
EarI	CTCTTC	1 cut(s)	281
Eco32I	GATATC	1 cut(s)	57
Eco88I	CYCGRG	2 cut(s)	131, 369
Eco91I	GGTNACC	1 cut(s)	313
EcoO65I	GGTNACC	1 cut(s)	313
EcoRII	CCWGG	1 cut(s)	260
EcoRV	GATATC	1 cut(s)	57
FaeI	CATG	1 cut(s)	240
FaiI	YATR	5 cut(s)	14, 80, 238, 348, 350
FalI	AAGNNNNNCTT	2 cut(s)	88, 120
FatI	CATG	1 cut(s)	236
FauNDI	CATATG	1 cut(s)	348
Fnu4HI	GCNGC	1 cut(s)	431
FokI	GGATG	1 cut(s)	408
Fsp4HI	GCNGC	1 cut(s)	431
FspBI	CTAG	1 cut(s)	206
GluI	GCNGC	1 cut(s)	431
GsuI	CTGGAG	1 cut(s)	23
HapII	CCGG	2 cut(s)	362, 425
Hin1II	CATG	1 cut(s)	240
HincII	GTYRAC	1 cut(s)	192
HindII	GTYRAC	1 cut(s)	192
HinfI	GANTC	1 cut(s)	48
HpaII	CCGG	2 cut(s)	362, 425
HphI	GGTGA	2 cut(s)	250, 310
Hpy166II	GTNNAC	2 cut(s)	192, 294
Hpy188I	TCNGA	3 cut(s)	71, 161, 333
Hpy188III	TCNNGA	7 cut(s)	40, 52, 117, 133, 184, 403, 425
Hpy8I	GTNNAC	2 cut(s)	192, 294
HpyAV	CCTTC	1 cut(s)	331
HpyCH4III	ACNGT	3 cut(s)	77, 298, 385
HpyCH4IV	ACGT	4 cut(s)	101, 164, 305, 395
HpyF10VI	GCNNNNNNNGC	1 cut(s)	439
HpyF3I	CTNAG	3 cut(s)	25, 409, 443
HpySE526I	ACGT	4 cut(s)	101, 164, 305, 395
Hsp92II	CATG	1 cut(s)	240
Kpn2I	TCCGGA	1 cut(s)	424
KpnI	GGTACC	1 cut(s)	33
Kzo9I	GATC	4 cut(s)	21, 178, 199, 255
LmnI	GCTCC	1 cut(s)	427
LpnPI	CCDG	7 cut(s)	53, 97, 130, 247, 274, 375, 438
MaeI	CTAG	1 cut(s)	206
MaeII	ACGT	4 cut(s)	101, 164, 305, 395
MaeIII	GTNAC	3 cut(s)	313, 352, 376
MalI	GATC	4 cut(s)	23, 180, 201, 257
MboI	GATC	4 cut(s)	21, 178, 199, 255
MboII	GAAGA	3 cut(s)	96, 268, 333
MflI	RGATCY	3 cut(s)	21, 178, 199
MluCI	AATT	1 cut(s)	155
MroI	TCCGGA	1 cut(s)	424
MroXI	GAANNNNTTC	2 cut(s)	103, 275
MseI	TTAA	1 cut(s)	154
MspA1I	CMGCKG	1 cut(s)	433
MspI	CCGG	2 cut(s)	362, 425
MspR9I	CCNGG	1 cut(s)	262
MvaI	CCWGG	1 cut(s)	262
MwoI	GCNNNNNNNGC	1 cut(s)	439
NdeI	CATATG	1 cut(s)	348
NdeII	GATC	4 cut(s)	21, 178, 199, 255
NlaIII	CATG	1 cut(s)	240
NlaIV	GGNNCC	4 cut(s)	31, 115, 201, 429
PaeR7I	CTCGAG	1 cut(s)	131
PcsI	WCGNNNNNNNCGW	1 cut(s)	302
PdmI	GAANNNNTTC	2 cut(s)	103, 275
PfeI	GAWTC	1 cut(s)	48
PkrI	GCNGC	1 cut(s)	432
Psp1406I	AACGTT	1 cut(s)	164
Psp6I	CCWGG	1 cut(s)	260
PspEI	GGTNACC	1 cut(s)	313
PspGI	CCWGG	1 cut(s)	260
PspN4I	GGNNCC	4 cut(s)	31, 115, 201, 429
PsuI	RGATCY	3 cut(s)	21, 178, 199
RsaI	GTAC	3 cut(s)	31, 293, 308
RsaNI	GTAC	3 cut(s)	30, 292, 307
SaqAI	TTAA	1 cut(s)	154
SatI	GCNGC	1 cut(s)	431
Sau3AI	GATC	4 cut(s)	21, 178, 199, 255
ScrFI	CCNGG	1 cut(s)	262
Sfr274I	CTCGAG	1 cut(s)	131
SlaI	CTCGAG	1 cut(s)	131
SmlI	CTYRAG	2 cut(s)	131, 403
SmoI	CTYRAG	2 cut(s)	131, 403
SpeI	ACTAGT	1 cut(s)	205
Sse9I	AATT	1 cut(s)	155
SsiI	CCGC	2 cut(s)	374, 431
SspMI	CTAG	1 cut(s)	206
StyD4I	CCNGG	1 cut(s)	260
TaaI	ACNGT	3 cut(s)	77, 298, 385
TaiI	ACGT	4 cut(s)	104, 167, 308, 398
TaqI	TCGA	2 cut(s)	132, 185
TasI	AATT	1 cut(s)	155
TauI	GCSGC	1 cut(s)	433
TfiI	GAWTC	1 cut(s)	48
Tru1I	TTAA	1 cut(s)	154
Tru9I	TTAA	1 cut(s)	154
TscAI	CASTG	1 cut(s)	390
TspDTI	ATGAA	1 cut(s)	225
TspRI	CASTG	1 cut(s)	390
XhoI	CTCGAG	1 cut(s)	131
XmnI	GAANNNNTTC	2 cut(s)	103, 275
XspI	CTAG	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.