Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000180

Physical Location & Seq

Genomic Coordinates Forward (+)

50931045 .. 50931815

Gene Structure 771 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ50503

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGAACCACGAACTCTGCAACTAATGGAGTTACAAACCCAGCAACAAATGGAATTACAAGCCCAGCAACCAACCGAGGAGGGAGGAAGCATCCAAGCAGCCGGGAGTAGTAACCGGTGGGCTCCCACACCGCCTCAACTAAGAATCCTCAAGGGGCTTTACTATGATAAGGGTTTTAAGTACCCAACTCCAGAGCAGATTCAAGAGATCTGCCTTCATCTGAAACAGTATGGGCAGATCGAGGACAAAAACGTCTTCTTTTGGTTCCAGAACCTCAAGGCTCGTGAGAGGCAGAAGTTGAAGGAATTTCGGAACGTTCCGGTTGGTGGATCTCTAGATCTCAATTTTGGATCCACTAGTTCTACTGATGATGGTAGATCCATTGATCTAAACTTTGGGTCACGTGTCGGCTATGGTGTTGACACATATTCCTCCTCACCCTTCAACACTAATACCAGTACTACCTCCTTTAGCACAACAGGAGGACAATCTTTCATGGAACAACGAGGAGGAGATCACCAGGAGATTGAAACCCTTCCACTATTCCCCATGTATGGTGAGGACATCTTGGGCAACATGAAGACTACTTCCGAGGGAGGTGGCGGTTATGGCGGTGGCTCTCACATTTCCCTTGAGCTCAATCTCAACTCCTACAGAGATGCAGACATGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

224

Amino Acids

24.93

Weight (kDa)

4.93

Isoelectric Point (pI)

53.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	38 - 98	1.4e-10	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000180)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c19g0499991 RchiOBHm_Chr0c19g0500021 RchiOBHm_Chr0c19g0500131 RchiOBHm_Chr0c31g0501321 RchiOBHm_Chr0c31g0501441 RchiOBHm_Chr1g0365611 RchiOBHm_Chr1g0366061 RchiOBHm_Chr1g0367951 RchiOBHm_Chr1g0369471 RchiOBHm_Chr1g0377271 RchiOBHm_Chr1g0379021 RchiOBHm_Chr1g0379461 RchiOBHm_Chr1g0381431 RchiOBHm_Chr1g0383551 RchiOBHm_Chr1g0383621 RchiOBHm_Chr2g0120951 RchiOBHm_Chr2g0121321 RchiOBHm_Chr2g0121381 RchiOBHm_Chr2g0121801 RchiOBHm_Chr2g0121861 RchiOBHm_Chr2g0122211 RchiOBHm_Chr2g0122471 RchiOBHm_Chr2g0122511 RchiOBHm_Chr2g0122751 RchiOBHm_Chr2g0123361 RchiOBHm_Chr2g0124071 RchiOBHm_Chr2g0124341 RchiOBHm_Chr2g0124361 RchiOBHm_Chr2g0124511 RchiOBHm_Chr2g0124641 RchiOBHm_Chr2g0125051 RchiOBHm_Chr2g0125111 RchiOBHm_Chr2g0125641 RchiOBHm_Chr2g0125871 RchiOBHm_Chr2g0125901 RchiOBHm_Chr2g0126011 RchiOBHm_Chr2g0126291 RchiOBHm_Chr2g0126341 RchiOBHm_Chr2g0126611 RchiOBHm_Chr2g0126671 RchiOBHm_Chr2g0126701 RchiOBHm_Chr2g0127021 RchiOBHm_Chr2g0127071 RchiOBHm_Chr2g0127361 RchiOBHm_Chr2g0127691 RchiOBHm_Chr2g0128041 RchiOBHm_Chr2g0128051 RchiOBHm_Chr2g0128061 RchiOBHm_Chr2g0128141 RchiOBHm_Chr2g0128171 RchiOBHm_Chr2g0128181 RchiOBHm_Chr2g0128551 RchiOBHm_Chr2g0128991 RchiOBHm_Chr2g0130061 RchiOBHm_Chr2g0130391 RchiOBHm_Chr2g0130631 RchiOBHm_Chr2g0130921 RchiOBHm_Chr2g0132731 RchiOBHm_Chr2g0133461 RchiOBHm_Chr2g0133921 RchiOBHm_Chr2g0134031 RchiOBHm_Chr2g0134281 RchiOBHm_Chr2g0134351 RchiOBHm_Chr2g0135501 RchiOBHm_Chr2g0135821 RchiOBHm_Chr2g0135931 RchiOBHm_Chr2g0137501 RchiOBHm_Chr2g0139141 RchiOBHm_Chr2g0139511 RchiOBHm_Chr2g0142411 RchiOBHm_Chr2g0143261 RchiOBHm_Chr2g0144171 RchiOBHm_Chr2g0144741 RchiOBHm_Chr2g0144841 RchiOBHm_Chr2g0145021 RchiOBHm_Chr2g0145831 RchiOBHm_Chr2g0145881 RchiOBHm_Chr2g0146081 RchiOBHm_Chr2g0146141 RchiOBHm_Chr2g0146671 RchiOBHm_Chr2g0149001 RchiOBHm_Chr2g0151811 RchiOBHm_Chr2g0151821 RchiOBHm_Chr2g0151831 RchiOBHm_Chr2g0152051 RchiOBHm_Chr2g0154791 RchiOBHm_Chr2g0155541 RchiOBHm_Chr2g0160791 RchiOBHm_Chr2g0161631 RchiOBHm_Chr2g0162151 RchiOBHm_Chr2g0162751 RchiOBHm_Chr2g0166561 RchiOBHm_Chr2g0166751 RchiOBHm_Chr2g0168891 RchiOBHm_Chr2g0170211 RchiOBHm_Chr2g0170781 RchiOBHm_Chr2g0172831 RchiOBHm_Chr2g0174791 RchiOBHm_Chr3g0448081 RchiOBHm_Chr3g0449761 RchiOBHm_Chr3g0453291 RchiOBHm_Chr3g0456271 RchiOBHm_Chr3g0456461 RchiOBHm_Chr3g0458351 RchiOBHm_Chr3g0461411 RchiOBHm_Chr3g0461511 RchiOBHm_Chr3g0463871 RchiOBHm_Chr3g0467841 RchiOBHm_Chr3g0470081 RchiOBHm_Chr3g0470571 RchiOBHm_Chr7g0187061 RchiOBHm_Chr7g0187461 RchiOBHm_Chr7g0187681 RchiOBHm_Chr7g0189901 RchiOBHm_Chr7g0190271 RchiOBHm_Chr7g0193451 RchiOBHm_Chr7g0194081 RchiOBHm_Chr7g0195771 RchiOBHm_Chr7g0196301 RchiOBHm_Chr7g0196911
rosa_multiflora	Rmu_sc0000236.1_g000047 Rmu_sc0000284.1_g000007 Rmu_sc0000288.1_g000006 Rmu_sc0000507.1_g000017 Rmu_sc0000580.1_g000015 Rmu_sc0000663.1_g000011 Rmu_sc0000675.1_g000024 Rmu_sc0000693.1_g000072 Rmu_sc0000779.1_g000005 Rmu_sc0000851.1_g000015 Rmu_sc0000962.1_g000001 Rmu_sc0001493.1_g000055 Rmu_sc0001669.1_g000025 Rmu_sc0001891.1_g000051 Rmu_sc0001926.1_g000007 Rmu_sc0002082.1_g000025 Rmu_sc0002141.1_g000001 Rmu_sc0002141.1_g000004 Rmu_sc0002414.1_g000012 Rmu_sc0002557.1_g000022 Rmu_sc0002709.1_g000038 Rmu_sc0002897.1_g000004 Rmu_sc0002934.1_g000055 Rmu_sc0003692.1_g000017 Rmu_sc0004283.1_g000068 Rmu_sc0004598.1_g000010 Rmu_sc0004614.1_g000004 Rmu_sc0004805.1_g000006 Rmu_sc0005142.1_g000041 Rmu_sc0005777.1_g000001 Rmu_sc0006420.1_g000019 Rmu_sc0006803.1_g000016 Rmu_sc0007034.1_g000015 Rmu_sc0008079.1_g000017 Rmu_sc0008148.1_g000040 Rmu_sc0008608.1_g000007 Rmu_sc0008675.1_g000001 Rmu_sc0009663.1_g000001 Rmu_sc0010188.1_g000003 Rmu_sc0010739.1_g000005 Rmu_sc0016265.1_g000001 Rmu_sc0031757.1_g000001 Rmu_ssc0000087.1_g000024 Rmu_ssc0000438.1_g000029
rosa_roxburghii	Rroxscaffold_1G00003350
rosa_rugosa	Rorug03G0248400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	251
AciI	CCGC	3 cut(s)	131, 603, 612
AclI	AACGTT	1 cut(s)	315
AclWI	GGATC	4 cut(s)	337, 345, 358, 372
AcsI	RAATTY	1 cut(s)	305
AcvI	CACGTG	1 cut(s)	404
AfaI	GTAC	2 cut(s)	182, 460
AfiI	CCNNNNNNNGG	2 cut(s)	326, 554
AflIII	ACRYGT	1 cut(s)	403
AgeI	ACCGGT	1 cut(s)	114
AgsI	TTSAA	4 cut(s)	203, 301, 445, 530
AhlI	ACTAGT	1 cut(s)	356
AjnI	CCWGG	1 cut(s)	519
AluBI	AGCT	1 cut(s)	637
AluI	AGCT	1 cut(s)	637
Alw21I	GWGCWC	1 cut(s)	639
AlwI	GGATC	4 cut(s)	337, 345, 358, 372
ApeKI	GCWGC	1 cut(s)	98
ApoI	RAATTY	1 cut(s)	305
AsiGI	ACCGGT	1 cut(s)	114
Asp700I	GAANNNNTTC	1 cut(s)	534
AsuC2I	CCSGG	1 cut(s)	103
AsuHPI	GGTGA	3 cut(s)	429, 509, 569
BamHI	GGATCC	1 cut(s)	350
BanII	GRGCYC	2 cut(s)	124, 639
BauI	CACGAG	1 cut(s)	282
BbrPI	CACGTG	1 cut(s)	404
BbsI	GAAGAC	2 cut(s)	247, 587
Bbv12I	GWGCWC	1 cut(s)	639
BbvI	GCAGC	1 cut(s)	110
BccI	CCATC	1 cut(s)	365
BciT130I	CCWGG	1 cut(s)	521
BcnI	CCSGG	1 cut(s)	103
BcuI	ACTAGT	1 cut(s)	356
BfaI	CTAG	2 cut(s)	335, 357
BfmI	CTRYAG	1 cut(s)	652
BglII	AGATCT	2 cut(s)	207, 337
BisI	GCNGC	1 cut(s)	99
BlsI	GCNGC	1 cut(s)	100
BmcAI	AGTACT	1 cut(s)	460
Bme1390I	CCNGG	2 cut(s)	103, 521
BmiI	GGNNCC	4 cut(s)	6, 123, 266, 352
BmrFI	CCNGG	2 cut(s)	103, 521
BmsI	GCATC	2 cut(s)	99, 649
BpiI	GAAGAC	2 cut(s)	247, 587
BpmI	CTGGAG	1 cut(s)	174
BpuEI	CTTGAG	3 cut(s)	134, 260, 653
BpuMI	CCSGG	1 cut(s)	103
BsaAI	YACGTR	1 cut(s)	404
BsaJI	CCNNGG	2 cut(s)	75, 591
BsaWI	WCCGGW	2 cut(s)	114, 319
Bsc4I	CCNNNNNNNGG	2 cut(s)	326, 554
Bse118I	RCCGGY	1 cut(s)	114
Bse1I	ACTGG	1 cut(s)	456
BseBI	CCWGG	1 cut(s)	521
BseDI	CCNNGG	2 cut(s)	75, 591
BseGI	GGATG	1 cut(s)	90
BseLI	CCNNNNNNNGG	2 cut(s)	326, 554
BseNI	ACTGG	1 cut(s)	456
BseRI	GAGGAG	4 cut(s)	92, 424, 522, 525
BseXI	GCAGC	1 cut(s)	110
BseYI	CCCAGC	2 cut(s)	39, 63
BshTI	ACCGGT	1 cut(s)	114
BsiHKAI	GWGCWC	1 cut(s)	639
BsiSI	CCGG	3 cut(s)	102, 115, 320
BslI	CCNNNNNNNGG	2 cut(s)	326, 554
Bsp1286I	GDGCHC	2 cut(s)	124, 639
Bsp143I	GATC	8 cut(s)	207, 237, 329, 337, 350, 377, 385, 514
BspACI	CCGC	3 cut(s)	131, 603, 612
BspLI	GGNNCC	4 cut(s)	6, 123, 266, 352
BspPI	GGATC	4 cut(s)	337, 345, 358, 372
BsrFI	RCCGGY	1 cut(s)	114
BsrI	ACTGG	1 cut(s)	456
BssAI	RCCGGY	1 cut(s)	114
BssECI	CCNNGG	2 cut(s)	75, 591
BssMI	GATC	8 cut(s)	207, 237, 329, 337, 350, 377, 385, 514
BssSI	CACGAG	1 cut(s)	282
Bst2BI	CACGAG	1 cut(s)	282
Bst2UI	CCWGG	1 cut(s)	521
Bst4CI	ACNGT	1 cut(s)	228
BstBAI	YACGTR	1 cut(s)	404
BstDEI	CTNAG	2 cut(s)	140, 672
BstF5I	GGATG	1 cut(s)	90
BstKTI	GATC	8 cut(s)	210, 240, 332, 340, 353, 380, 388, 517
BstMBI	GATC	8 cut(s)	207, 237, 329, 337, 350, 377, 385, 514
BstMWI	GCNNNNNNNGC	2 cut(s)	609, 668
BstNI	CCWGG	1 cut(s)	521
BstSCI	CCNGG	2 cut(s)	101, 519
BstSFI	CTRYAG	1 cut(s)	652
BstV1I	GCAGC	1 cut(s)	110
BstV2I	GAAGAC	2 cut(s)	247, 587
BstX2I	RGATCY	5 cut(s)	207, 329, 337, 350, 377
BstYI	RGATCY	5 cut(s)	207, 329, 337, 350, 377
BtsCI	GGATG	1 cut(s)	90
Cfr10I	RCCGGY	1 cut(s)	114
Csp6I	GTAC	2 cut(s)	181, 459
CspAI	ACCGGT	1 cut(s)	114
CviAII	CATG	4 cut(s)	496, 550, 577, 667
CviJI	RGCY	9 cut(s)	62, 101, 122, 157, 281, 411, 618, 637, 671
CviKI_1	RGCY	9 cut(s)	62, 101, 122, 157, 281, 411, 618, 637, 671
CviQI	GTAC	2 cut(s)	181, 459
DdeI	CTNAG	2 cut(s)	140, 672
DpnI	GATC	8 cut(s)	209, 239, 331, 339, 352, 379, 387, 516
DpnII	GATC	8 cut(s)	207, 237, 329, 337, 350, 377, 385, 514
DrdI	GACNNNNNNGTC	1 cut(s)	251
DseDI	GACNNNNNNGTC	1 cut(s)	251
Ecl136II	GAGCTC	1 cut(s)	637
Eco24I	GRGCYC	2 cut(s)	124, 639
Eco53kI	GAGCTC	1 cut(s)	637
Eco72I	CACGTG	1 cut(s)	404
EcoICRI	GAGCTC	1 cut(s)	637
EcoRII	CCWGG	1 cut(s)	519
EcoT38I	GRGCYC	2 cut(s)	124, 639
FaeI	CATG	4 cut(s)	499, 553, 580, 670
FatI	CATG	4 cut(s)	495, 549, 576, 666
Fnu4HI	GCNGC	1 cut(s)	99
FokI	GGATG	1 cut(s)	77
FriOI	GRGCYC	2 cut(s)	124, 639
Fsp4HI	GCNGC	1 cut(s)	99
FspBI	CTAG	2 cut(s)	335, 357
GluI	GCNGC	1 cut(s)	99
GsaI	CCCAGC	2 cut(s)	43, 67
GsuI	CTGGAG	1 cut(s)	174
HapII	CCGG	3 cut(s)	102, 115, 320
Hin1II	CATG	4 cut(s)	499, 553, 580, 670
HincII	GTYRAC	1 cut(s)	421
HindII	GTYRAC	1 cut(s)	421
HinfI	GANTC	2 cut(s)	144, 199
HpaII	CCGG	3 cut(s)	102, 115, 320
HphI	GGTGA	3 cut(s)	429, 509, 569
Hpy166II	GTNNAC	1 cut(s)	421
Hpy188I	TCNGA	3 cut(s)	222, 312, 592
Hpy188III	TCNNGA	5 cut(s)	191, 203, 268, 284, 335
Hpy8I	GTNNAC	1 cut(s)	421
HpyAV	CCTTC	4 cut(s)	224, 295, 451, 545
HpyCH4III	ACNGT	1 cut(s)	228
HpyCH4IV	ACGT	3 cut(s)	252, 315, 403
HpyCH4V	TGCA	2 cut(s)	19, 662
HpyF10VI	GCNNNNNNNGC	2 cut(s)	609, 668
HpyF3I	CTNAG	2 cut(s)	140, 672
HpySE526I	ACGT	3 cut(s)	252, 315, 403
Hsp92II	CATG	4 cut(s)	499, 553, 580, 670
Kzo9I	GATC	8 cut(s)	207, 237, 329, 337, 350, 377, 385, 514
LmnI	GCTCC	1 cut(s)	127
Lsp1109I	GCAGC	1 cut(s)	110
LweI	GCATC	2 cut(s)	99, 649
MaeI	CTAG	2 cut(s)	335, 357
MaeII	ACGT	3 cut(s)	252, 315, 403
MaeIII	GTNAC	3 cut(s)	30, 110, 399
MalI	GATC	8 cut(s)	209, 239, 331, 339, 352, 379, 387, 516
MboI	GATC	8 cut(s)	207, 237, 329, 337, 350, 377, 385, 514
MboII	GAAGA	2 cut(s)	247, 592
MflI	RGATCY	5 cut(s)	207, 329, 337, 350, 377
MhlI	GDGCHC	2 cut(s)	124, 639
MluCI	AATT	3 cut(s)	53, 305, 343
MroXI	GAANNNNTTC	1 cut(s)	534
MseI	TTAA	1 cut(s)	177
MspI	CCGG	3 cut(s)	102, 115, 320
MspR9I	CCNGG	2 cut(s)	103, 521
MvaI	CCWGG	1 cut(s)	521
MwoI	GCNNNNNNNGC	2 cut(s)	609, 668
NciI	CCSGG	1 cut(s)	103
NdeII	GATC	8 cut(s)	207, 237, 329, 337, 350, 377, 385, 514
NlaIII	CATG	4 cut(s)	499, 553, 580, 670
NlaIV	GGNNCC	4 cut(s)	6, 123, 266, 352
NmuCI	GTSAC	1 cut(s)	399
PdmI	GAANNNNTTC	1 cut(s)	534
PfeI	GAWTC	2 cut(s)	144, 199
PinAI	ACCGGT	1 cut(s)	114
PkrI	GCNGC	1 cut(s)	100
PmaCI	CACGTG	1 cut(s)	404
PmlI	CACGTG	1 cut(s)	404
Ppu21I	YACGTR	1 cut(s)	404
Psp124BI	GAGCTC	1 cut(s)	639
Psp1406I	AACGTT	1 cut(s)	315
Psp6I	CCWGG	1 cut(s)	519
PspCI	CACGTG	1 cut(s)	404
PspFI	CCCAGC	2 cut(s)	39, 63
PspGI	CCWGG	1 cut(s)	519
PspN4I	GGNNCC	4 cut(s)	6, 123, 266, 352
PsuI	RGATCY	5 cut(s)	207, 329, 337, 350, 377
RsaI	GTAC	2 cut(s)	182, 460
RsaNI	GTAC	2 cut(s)	181, 459
SacI	GAGCTC	1 cut(s)	639
SaqAI	TTAA	1 cut(s)	177
SatI	GCNGC	1 cut(s)	99
Sau3AI	GATC	8 cut(s)	207, 237, 329, 337, 350, 377, 385, 514
ScaI	AGTACT	1 cut(s)	460
ScrFI	CCNGG	2 cut(s)	103, 521
SduI	GDGCHC	2 cut(s)	124, 639
SetI	ASST	7 cut(s)	255, 276, 318, 406, 467, 601, 639
SfaNI	GCATC	2 cut(s)	99, 649
SfcI	CTRYAG	1 cut(s)	652
SmlI	CTYRAG	3 cut(s)	149, 275, 632
SmoI	CTYRAG	3 cut(s)	149, 275, 632
SpeI	ACTAGT	1 cut(s)	356
Sse9I	AATT	3 cut(s)	53, 305, 343
SsiI	CCGC	3 cut(s)	131, 603, 612
SspMI	CTAG	2 cut(s)	335, 357
SstI	GAGCTC	1 cut(s)	639
StyD4I	CCNGG	2 cut(s)	101, 519
TaaI	ACNGT	1 cut(s)	228
TaiI	ACGT	3 cut(s)	255, 318, 406
TaqI	TCGA	1 cut(s)	240
TasI	AATT	3 cut(s)	53, 305, 343
TatI	WGTACW	1 cut(s)	458
TfiI	GAWTC	2 cut(s)	144, 199
Tru1I	TTAA	1 cut(s)	177
Tru9I	TTAA	1 cut(s)	177
TseFI	GTSAC	1 cut(s)	399
TseI	GCWGC	1 cut(s)	98
Tsp45I	GTSAC	1 cut(s)	399
TspDTI	ATGAA	3 cut(s)	206, 484, 593
XapI	RAATTY	1 cut(s)	305
XbaI	TCTAGA	1 cut(s)	334
XmnI	GAANNNNTTC	1 cut(s)	534
XspI	CTAG	2 cut(s)	335, 357
ZrmI	AGTACT	1 cut(s)	460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.