RchiOBHm_Chr2g0127691

Homeodomain

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
42567083 .. 42567712
630 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ49954

Sequence Viewer

Length: 630 bp
ATGGAATTACAAGCCCAGCAACCAACCGAGGAGGAGGGAGGAAGCATCCAAGCAGCCGGGAGTAGTAACCGGTGGGCTCCCACACCGCCTCAACTAAGAATCCTCAAGGGCCTTTACTATGATAAGGGTTTTAAGTACCCAACTCCAGAGCAGATTCAAGAGATCTGCCTTCATCTGAAACAGTATGGGCAGATCGAGGACAAAAACGTTTTCTTTTGGTTCCAGAACCTCAAGGCTCGTGAGAGGCAGAAGTTGAAGGAATTTCGGAACGTTCCGGTTGGTGGATCTCTCGATCTCAATTTTGGATCCACTAGTTCTACTGATGATGGTAGATCCATTGATCTAAACTTTGGGTCACGTGTCAGCTATGGTGTTGACCCATATTCCTCCTCACCCTTCAACACTAATACCAGTACTACCTCCTTTGGCACAACAGGAGGACAATCTTTCATGGAACAACAAGGAGGAGATCACCAGGAGATTGAAACCCTTCCACTATTCCCCATGCATGGTGAGGACATCTCGGGCAACATGAAGACTACTTCCGAGGGAGGTGGCGGTTATGGCGGTAGCTCTCACATTTCCCTTGAGCTCAGTCTCAACTCCTACAGAGATGCAGACATGGCTTAG

Protein Analysis

209

Amino Acids

23.03

Weight (kDa)

4.9

Isoelectric Point (pI)

56.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 23 - 83 1.2e-10 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000180)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr0c19g0499991 RchiOBHm_Chr0c19g0500021 RchiOBHm_Chr0c19g0500131 RchiOBHm_Chr0c31g0501321 RchiOBHm_Chr0c31g0501441 RchiOBHm_Chr1g0365611 RchiOBHm_Chr1g0366061 RchiOBHm_Chr1g0367951 RchiOBHm_Chr1g0369471 RchiOBHm_Chr1g0377271 RchiOBHm_Chr1g0379021 RchiOBHm_Chr1g0379461 RchiOBHm_Chr1g0381431 RchiOBHm_Chr1g0383551 RchiOBHm_Chr1g0383621 RchiOBHm_Chr2g0120951 RchiOBHm_Chr2g0121321 RchiOBHm_Chr2g0121381 RchiOBHm_Chr2g0121801 RchiOBHm_Chr2g0121861 RchiOBHm_Chr2g0122211 RchiOBHm_Chr2g0122471 RchiOBHm_Chr2g0122511 RchiOBHm_Chr2g0122751 RchiOBHm_Chr2g0123361 RchiOBHm_Chr2g0124071 RchiOBHm_Chr2g0124341 RchiOBHm_Chr2g0124361 RchiOBHm_Chr2g0124511 RchiOBHm_Chr2g0124641 RchiOBHm_Chr2g0125051 RchiOBHm_Chr2g0125111 RchiOBHm_Chr2g0125641 RchiOBHm_Chr2g0125871 RchiOBHm_Chr2g0125901 RchiOBHm_Chr2g0126011 RchiOBHm_Chr2g0126291 RchiOBHm_Chr2g0126341 RchiOBHm_Chr2g0126611 RchiOBHm_Chr2g0126671 RchiOBHm_Chr2g0126701 RchiOBHm_Chr2g0127021 RchiOBHm_Chr2g0127071 RchiOBHm_Chr2g0127361 RchiOBHm_Chr2g0127691 RchiOBHm_Chr2g0128041 RchiOBHm_Chr2g0128051 RchiOBHm_Chr2g0128061 RchiOBHm_Chr2g0128141 RchiOBHm_Chr2g0128171 RchiOBHm_Chr2g0128181 RchiOBHm_Chr2g0128551 RchiOBHm_Chr2g0128991 RchiOBHm_Chr2g0130061 RchiOBHm_Chr2g0130391 RchiOBHm_Chr2g0130631 RchiOBHm_Chr2g0130921 RchiOBHm_Chr2g0132731 RchiOBHm_Chr2g0133461 RchiOBHm_Chr2g0133921 RchiOBHm_Chr2g0134031 RchiOBHm_Chr2g0134281 RchiOBHm_Chr2g0134351 RchiOBHm_Chr2g0135501 RchiOBHm_Chr2g0135821 RchiOBHm_Chr2g0135931 RchiOBHm_Chr2g0137501 RchiOBHm_Chr2g0139141 RchiOBHm_Chr2g0139511 RchiOBHm_Chr2g0142411 RchiOBHm_Chr2g0143261 RchiOBHm_Chr2g0144171 RchiOBHm_Chr2g0144741 RchiOBHm_Chr2g0144841 RchiOBHm_Chr2g0145021 RchiOBHm_Chr2g0145831 RchiOBHm_Chr2g0145881 RchiOBHm_Chr2g0146081 RchiOBHm_Chr2g0146141 RchiOBHm_Chr2g0146671 RchiOBHm_Chr2g0149001 RchiOBHm_Chr2g0151811 RchiOBHm_Chr2g0151821 RchiOBHm_Chr2g0151831 RchiOBHm_Chr2g0152051 RchiOBHm_Chr2g0154791 RchiOBHm_Chr2g0155541 RchiOBHm_Chr2g0160791 RchiOBHm_Chr2g0161631 RchiOBHm_Chr2g0162151 RchiOBHm_Chr2g0162751 RchiOBHm_Chr2g0166561 RchiOBHm_Chr2g0166751 RchiOBHm_Chr2g0168891 RchiOBHm_Chr2g0170211 RchiOBHm_Chr2g0170781 RchiOBHm_Chr2g0172831 RchiOBHm_Chr2g0174791 RchiOBHm_Chr3g0448081 RchiOBHm_Chr3g0449761 RchiOBHm_Chr3g0453291 RchiOBHm_Chr3g0456271 RchiOBHm_Chr3g0456461 RchiOBHm_Chr3g0458351 RchiOBHm_Chr3g0461411 RchiOBHm_Chr3g0461511 RchiOBHm_Chr3g0463871 RchiOBHm_Chr3g0467841 RchiOBHm_Chr3g0470081 RchiOBHm_Chr3g0470571 RchiOBHm_Chr7g0187061 RchiOBHm_Chr7g0187461 RchiOBHm_Chr7g0187681 RchiOBHm_Chr7g0189901 RchiOBHm_Chr7g0190271 RchiOBHm_Chr7g0193451 RchiOBHm_Chr7g0194081 RchiOBHm_Chr7g0195771 RchiOBHm_Chr7g0196301 RchiOBHm_Chr7g0196911
rosa_multiflora Rmu_sc0000236.1_g000047 Rmu_sc0000284.1_g000007 Rmu_sc0000288.1_g000006 Rmu_sc0000507.1_g000017 Rmu_sc0000580.1_g000015 Rmu_sc0000663.1_g000011 Rmu_sc0000675.1_g000024 Rmu_sc0000693.1_g000072 Rmu_sc0000779.1_g000005 Rmu_sc0000851.1_g000015 Rmu_sc0000962.1_g000001 Rmu_sc0001493.1_g000055 Rmu_sc0001669.1_g000025 Rmu_sc0001891.1_g000051 Rmu_sc0001926.1_g000007 Rmu_sc0002082.1_g000025 Rmu_sc0002141.1_g000001 Rmu_sc0002141.1_g000004 Rmu_sc0002414.1_g000012 Rmu_sc0002557.1_g000022 Rmu_sc0002709.1_g000038 Rmu_sc0002897.1_g000004 Rmu_sc0002934.1_g000055 Rmu_sc0003692.1_g000017 Rmu_sc0004283.1_g000068 Rmu_sc0004598.1_g000010 Rmu_sc0004614.1_g000004 Rmu_sc0004805.1_g000006 Rmu_sc0005142.1_g000041 Rmu_sc0005777.1_g000001 Rmu_sc0006420.1_g000019 Rmu_sc0006803.1_g000016 Rmu_sc0007034.1_g000015 Rmu_sc0008079.1_g000017 Rmu_sc0008148.1_g000040 Rmu_sc0008608.1_g000007 Rmu_sc0008675.1_g000001 Rmu_sc0009663.1_g000001 Rmu_sc0010188.1_g000003 Rmu_sc0010739.1_g000005 Rmu_sc0016265.1_g000001 Rmu_sc0031757.1_g000001 Rmu_ssc0000087.1_g000024 Rmu_ssc0000438.1_g000029
rosa_roxburghii Rroxscaffold_1G00003350
rosa_rugosa Rorug03G0248400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 86, 558, 567
AclI AACGTT 2 cut(s) 207, 270
AclWI GGATC 4 cut(s) 292, 300, 313, 327
AcsI RAATTY 1 cut(s) 260
AcvI CACGTG 1 cut(s) 359
AfaI GTAC 2 cut(s) 137, 415
AfiI CCNNNNNNNGG 2 cut(s) 281, 509
AflIII ACRYGT 1 cut(s) 358
AgeI ACCGGT 1 cut(s) 69
AgsI TTSAA 4 cut(s) 158, 256, 400, 485
AhlI ACTAGT 1 cut(s) 311
AjnI CCWGG 1 cut(s) 474
AluBI AGCT 3 cut(s) 366, 573, 592
AluI AGCT 3 cut(s) 366, 573, 592
Alw21I GWGCWC 1 cut(s) 594
Alw26I GTCTC 1 cut(s) 602
AlwI GGATC 4 cut(s) 292, 300, 313, 327
Ama87I CYCGRG 1 cut(s) 523
AoxI GGCC 1 cut(s) 109
ApeKI GCWGC 1 cut(s) 53
ApoI RAATTY 1 cut(s) 260
AsiGI ACCGGT 1 cut(s) 69
Asp700I GAANNNNTTC 1 cut(s) 489
AspS9I GGNCC 1 cut(s) 109
AsuC2I CCSGG 1 cut(s) 58
AsuHPI GGTGA 3 cut(s) 384, 464, 524
AvaI CYCGRG 1 cut(s) 523
BamHI GGATCC 1 cut(s) 305
BanII GRGCYC 2 cut(s) 79, 594
BauI CACGAG 1 cut(s) 237
BbrPI CACGTG 1 cut(s) 359
BbsI GAAGAC 1 cut(s) 542
Bbv12I GWGCWC 1 cut(s) 594
BbvI GCAGC 1 cut(s) 65
BccI CCATC 1 cut(s) 320
BciT130I CCWGG 1 cut(s) 476
BcnI CCSGG 1 cut(s) 58
BcoDI GTCTC 1 cut(s) 602
BcuI ACTAGT 1 cut(s) 311
BfaI CTAG 1 cut(s) 312
BfmI CTRYAG 1 cut(s) 607
BglII AGATCT 1 cut(s) 162
BisI GCNGC 1 cut(s) 54
BlsI GCNGC 1 cut(s) 55
BmcAI AGTACT 1 cut(s) 415
Bme1390I CCNGG 2 cut(s) 58, 476
BmeT110I CYCGRG 1 cut(s) 523
BmgT120I GGNCC 1 cut(s) 109
BmiI GGNNCC 3 cut(s) 78, 221, 307
BmrFI CCNGG 2 cut(s) 58, 476
BmsI GCATC 2 cut(s) 54, 604
BpiI GAAGAC 1 cut(s) 542
BplI GAGNNNNNCTC 2 cut(s) 506, 538
BpmI CTGGAG 1 cut(s) 129
BpuEI CTTGAG 3 cut(s) 89, 215, 608
BpuMI CCSGG 1 cut(s) 58
BsaAI YACGTR 1 cut(s) 359
BsaJI CCNNGG 2 cut(s) 27, 546
BsaWI WCCGGW 2 cut(s) 69, 274
Bsc4I CCNNNNNNNGG 2 cut(s) 281, 509
Bse118I RCCGGY 1 cut(s) 69
Bse1I ACTGG 1 cut(s) 411
BseBI CCWGG 1 cut(s) 476
BseDI CCNNGG 2 cut(s) 27, 546
BseGI GGATG 1 cut(s) 45
BseLI CCNNNNNNNGG 2 cut(s) 281, 509
BseMII CTCAG 1 cut(s) 607
BseNI ACTGG 1 cut(s) 411
BseRI GAGGAG 4 cut(s) 44, 47, 379, 480
BseXI GCAGC 1 cut(s) 65
BseYI CCCAGC 1 cut(s) 15
BshFI GGCC 1 cut(s) 111
BshTI ACCGGT 1 cut(s) 69
BsiHKAI GWGCWC 1 cut(s) 594
BsiHKCI CYCGRG 1 cut(s) 523
BsiSI CCGG 3 cut(s) 57, 70, 275
BslI CCNNNNNNNGG 2 cut(s) 281, 509
BsmAI GTCTC 1 cut(s) 602
BsnI GGCC 1 cut(s) 111
BsoBI CYCGRG 1 cut(s) 523
Bsp1286I GDGCHC 2 cut(s) 79, 594
Bsp143I GATC 8 cut(s) 162, 192, 284, 292, 305, 332, 340, 469
BspACI CCGC 3 cut(s) 86, 558, 567
BspANI GGCC 1 cut(s) 111
BspCNI CTCAG 1 cut(s) 606
BspLI GGNNCC 3 cut(s) 78, 221, 307
BspPI GGATC 4 cut(s) 292, 300, 313, 327
BsrFI RCCGGY 1 cut(s) 69
BsrI ACTGG 1 cut(s) 411
BssAI RCCGGY 1 cut(s) 69
BssECI CCNNGG 2 cut(s) 27, 546
BssMI GATC 8 cut(s) 162, 192, 284, 292, 305, 332, 340, 469
BssSI CACGAG 1 cut(s) 237
Bst2BI CACGAG 1 cut(s) 237
Bst2UI CCWGG 1 cut(s) 476
Bst4CI ACNGT 1 cut(s) 183
BstBAI YACGTR 1 cut(s) 359
BstDEI CTNAG 3 cut(s) 95, 593, 627
BstF5I GGATG 1 cut(s) 45
BstKTI GATC 8 cut(s) 165, 195, 287, 295, 308, 335, 343, 472
BstMAI GTCTC 1 cut(s) 602
BstMBI GATC 8 cut(s) 162, 192, 284, 292, 305, 332, 340, 469
BstMWI GCNNNNNNNGC 2 cut(s) 564, 623
BstNI CCWGG 1 cut(s) 476
BstSCI CCNGG 2 cut(s) 56, 474
BstSFI CTRYAG 1 cut(s) 607
BstV1I GCAGC 1 cut(s) 65
BstV2I GAAGAC 1 cut(s) 542
BstX2I RGATCY 4 cut(s) 162, 284, 305, 332
BstYI RGATCY 4 cut(s) 162, 284, 305, 332
BsuRI GGCC 1 cut(s) 111
BtsCI GGATG 1 cut(s) 45
Cfr10I RCCGGY 1 cut(s) 69
Cfr13I GGNCC 1 cut(s) 109
Csp6I GTAC 2 cut(s) 136, 414
CspAI ACCGGT 1 cut(s) 69
CviAII CATG 5 cut(s) 451, 505, 509, 532, 622
CviJI RGCY 9 cut(s) 14, 56, 77, 111, 236, 366, 573, 592, 626
CviKI_1 RGCY 9 cut(s) 14, 56, 77, 111, 236, 366, 573, 592, 626
CviQI GTAC 2 cut(s) 136, 414
DdeI CTNAG 3 cut(s) 95, 593, 627
DpnI GATC 8 cut(s) 164, 194, 286, 294, 307, 334, 342, 471
DpnII GATC 8 cut(s) 162, 192, 284, 292, 305, 332, 340, 469
Ecl136II GAGCTC 1 cut(s) 592
Eco24I GRGCYC 2 cut(s) 79, 594
Eco53kI GAGCTC 1 cut(s) 592
Eco72I CACGTG 1 cut(s) 359
Eco88I CYCGRG 1 cut(s) 523
EcoICRI GAGCTC 1 cut(s) 592
EcoO109I RGGNCCY 1 cut(s) 109
EcoRII CCWGG 1 cut(s) 474
EcoT22I ATGCAT 1 cut(s) 510
EcoT38I GRGCYC 2 cut(s) 79, 594
FaeI CATG 5 cut(s) 454, 508, 512, 535, 625
FatI CATG 5 cut(s) 450, 504, 508, 531, 621
Fnu4HI GCNGC 1 cut(s) 54
FokI GGATG 1 cut(s) 32
FriOI GRGCYC 2 cut(s) 79, 594
Fsp4HI GCNGC 1 cut(s) 54
FspBI CTAG 1 cut(s) 312
GluI GCNGC 1 cut(s) 54
GsaI CCCAGC 1 cut(s) 19
GsuI CTGGAG 1 cut(s) 129
HaeIII GGCC 1 cut(s) 111
HapII CCGG 3 cut(s) 57, 70, 275
Hin1II CATG 5 cut(s) 454, 508, 512, 535, 625
HincII GTYRAC 1 cut(s) 376
HindII GTYRAC 1 cut(s) 376
HinfI GANTC 2 cut(s) 99, 154
HpaII CCGG 3 cut(s) 57, 70, 275
HphI GGTGA 3 cut(s) 384, 464, 524
Hpy166II GTNNAC 1 cut(s) 376
Hpy188I TCNGA 3 cut(s) 177, 267, 547
Hpy188III TCNNGA 5 cut(s) 146, 158, 223, 239, 290
Hpy8I GTNNAC 1 cut(s) 376
HpyAV CCTTC 4 cut(s) 179, 250, 406, 500
HpyCH4III ACNGT 1 cut(s) 183
HpyCH4IV ACGT 3 cut(s) 207, 270, 358
HpyCH4V TGCA 2 cut(s) 508, 617
HpyF10VI GCNNNNNNNGC 2 cut(s) 564, 623
HpyF3I CTNAG 3 cut(s) 95, 593, 627
HpySE526I ACGT 3 cut(s) 207, 270, 358
Hsp92II CATG 5 cut(s) 454, 508, 512, 535, 625
Kzo9I GATC 8 cut(s) 162, 192, 284, 292, 305, 332, 340, 469
LmnI GCTCC 1 cut(s) 82
Lsp1109I GCAGC 1 cut(s) 65
LweI GCATC 2 cut(s) 54, 604
MaeI CTAG 1 cut(s) 312
MaeII ACGT 3 cut(s) 207, 270, 358
MaeIII GTNAC 2 cut(s) 65, 354
MalI GATC 8 cut(s) 164, 194, 286, 294, 307, 334, 342, 471
MboI GATC 8 cut(s) 162, 192, 284, 292, 305, 332, 340, 469
MboII GAAGA 1 cut(s) 547
MflI RGATCY 4 cut(s) 162, 284, 305, 332
MhlI GDGCHC 2 cut(s) 79, 594
MluCI AATT 3 cut(s) 5, 260, 298
Mph1103I ATGCAT 1 cut(s) 510
MroXI GAANNNNTTC 1 cut(s) 489
MseI TTAA 1 cut(s) 132
MspI CCGG 3 cut(s) 57, 70, 275
MspR9I CCNGG 2 cut(s) 58, 476
MvaI CCWGG 1 cut(s) 476
MwoI GCNNNNNNNGC 2 cut(s) 564, 623
NciI CCSGG 1 cut(s) 58
NdeII GATC 8 cut(s) 162, 192, 284, 292, 305, 332, 340, 469
NlaIII CATG 5 cut(s) 454, 508, 512, 535, 625
NlaIV GGNNCC 3 cut(s) 78, 221, 307
NmuCI GTSAC 1 cut(s) 354
NsiI ATGCAT 1 cut(s) 510
PdmI GAANNNNTTC 1 cut(s) 489
PfeI GAWTC 2 cut(s) 99, 154
PinAI ACCGGT 1 cut(s) 69
PkrI GCNGC 1 cut(s) 55
PmaCI CACGTG 1 cut(s) 359
PmlI CACGTG 1 cut(s) 359
Ppu21I YACGTR 1 cut(s) 359
Psp124BI GAGCTC 1 cut(s) 594
Psp1406I AACGTT 2 cut(s) 207, 270
Psp6I CCWGG 1 cut(s) 474
PspCI CACGTG 1 cut(s) 359
PspFI CCCAGC 1 cut(s) 15
PspGI CCWGG 1 cut(s) 474
PspN4I GGNNCC 3 cut(s) 78, 221, 307
PspPI GGNCC 1 cut(s) 109
PsuI RGATCY 4 cut(s) 162, 284, 305, 332
RsaI GTAC 2 cut(s) 137, 415
RsaNI GTAC 2 cut(s) 136, 414
SacI GAGCTC 1 cut(s) 594
SaqAI TTAA 1 cut(s) 132
SatI GCNGC 1 cut(s) 54
Sau3AI GATC 8 cut(s) 162, 192, 284, 292, 305, 332, 340, 469
Sau96I GGNCC 1 cut(s) 109
ScaI AGTACT 1 cut(s) 415
ScrFI CCNGG 2 cut(s) 58, 476
SduI GDGCHC 2 cut(s) 79, 594
SetI ASST 9 cut(s) 210, 231, 273, 361, 368, 422, 556, 575, 594
SfaNI GCATC 2 cut(s) 54, 604
SfcI CTRYAG 1 cut(s) 607
SmlI CTYRAG 3 cut(s) 104, 230, 587
SmoI CTYRAG 3 cut(s) 104, 230, 587
SpeI ACTAGT 1 cut(s) 311
Sse9I AATT 3 cut(s) 5, 260, 298
SsiI CCGC 3 cut(s) 86, 558, 567
SspMI CTAG 1 cut(s) 312
SstI GAGCTC 1 cut(s) 594
StyD4I CCNGG 2 cut(s) 56, 474
TaaI ACNGT 1 cut(s) 183
TaiI ACGT 3 cut(s) 210, 273, 361
TaqI TCGA 2 cut(s) 195, 291
TasI AATT 3 cut(s) 5, 260, 298
TatI WGTACW 1 cut(s) 413
TfiI GAWTC 2 cut(s) 99, 154
Tru1I TTAA 1 cut(s) 132
Tru9I TTAA 1 cut(s) 132
TseFI GTSAC 1 cut(s) 354
TseI GCWGC 1 cut(s) 53
Tsp45I GTSAC 1 cut(s) 354
TspDTI ATGAA 3 cut(s) 161, 439, 548
XapI RAATTY 1 cut(s) 260
XmnI GAANNNNTTC 1 cut(s) 489
XspI CTAG 1 cut(s) 312
ZrmI AGTACT 1 cut(s) 415
Zsp2I ATGCAT 1 cut(s) 510
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.