Homeodomain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Homeodomain | PF00046 | 23 - 83 | 1.2e-10 | Homeodomain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 3 cut(s) | 86, 558, 567 |
| AclI | AACGTT | 2 cut(s) | 207, 270 |
| AclWI | GGATC | 4 cut(s) | 292, 300, 313, 327 |
| AcsI | RAATTY | 1 cut(s) | 260 |
| AcvI | CACGTG | 1 cut(s) | 359 |
| AfaI | GTAC | 2 cut(s) | 137, 415 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 281, 509 |
| AflIII | ACRYGT | 1 cut(s) | 358 |
| AgeI | ACCGGT | 1 cut(s) | 69 |
| AgsI | TTSAA | 4 cut(s) | 158, 256, 400, 485 |
| AhlI | ACTAGT | 1 cut(s) | 311 |
| AjnI | CCWGG | 1 cut(s) | 474 |
| AluBI | AGCT | 3 cut(s) | 366, 573, 592 |
| AluI | AGCT | 3 cut(s) | 366, 573, 592 |
| Alw21I | GWGCWC | 1 cut(s) | 594 |
| Alw26I | GTCTC | 1 cut(s) | 602 |
| AlwI | GGATC | 4 cut(s) | 292, 300, 313, 327 |
| Ama87I | CYCGRG | 1 cut(s) | 523 |
| AoxI | GGCC | 1 cut(s) | 109 |
| ApeKI | GCWGC | 1 cut(s) | 53 |
| ApoI | RAATTY | 1 cut(s) | 260 |
| AsiGI | ACCGGT | 1 cut(s) | 69 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 489 |
| AspS9I | GGNCC | 1 cut(s) | 109 |
| AsuC2I | CCSGG | 1 cut(s) | 58 |
| AsuHPI | GGTGA | 3 cut(s) | 384, 464, 524 |
| AvaI | CYCGRG | 1 cut(s) | 523 |
| BamHI | GGATCC | 1 cut(s) | 305 |
| BanII | GRGCYC | 2 cut(s) | 79, 594 |
| BauI | CACGAG | 1 cut(s) | 237 |
| BbrPI | CACGTG | 1 cut(s) | 359 |
| BbsI | GAAGAC | 1 cut(s) | 542 |
| Bbv12I | GWGCWC | 1 cut(s) | 594 |
| BbvI | GCAGC | 1 cut(s) | 65 |
| BccI | CCATC | 1 cut(s) | 320 |
| BciT130I | CCWGG | 1 cut(s) | 476 |
| BcnI | CCSGG | 1 cut(s) | 58 |
| BcoDI | GTCTC | 1 cut(s) | 602 |
| BcuI | ACTAGT | 1 cut(s) | 311 |
| BfaI | CTAG | 1 cut(s) | 312 |
| BfmI | CTRYAG | 1 cut(s) | 607 |
| BglII | AGATCT | 1 cut(s) | 162 |
| BisI | GCNGC | 1 cut(s) | 54 |
| BlsI | GCNGC | 1 cut(s) | 55 |
| BmcAI | AGTACT | 1 cut(s) | 415 |
| Bme1390I | CCNGG | 2 cut(s) | 58, 476 |
| BmeT110I | CYCGRG | 1 cut(s) | 523 |
| BmgT120I | GGNCC | 1 cut(s) | 109 |
| BmiI | GGNNCC | 3 cut(s) | 78, 221, 307 |
| BmrFI | CCNGG | 2 cut(s) | 58, 476 |
| BmsI | GCATC | 2 cut(s) | 54, 604 |
| BpiI | GAAGAC | 1 cut(s) | 542 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 506, 538 |
| BpmI | CTGGAG | 1 cut(s) | 129 |
| BpuEI | CTTGAG | 3 cut(s) | 89, 215, 608 |
| BpuMI | CCSGG | 1 cut(s) | 58 |
| BsaAI | YACGTR | 1 cut(s) | 359 |
| BsaJI | CCNNGG | 2 cut(s) | 27, 546 |
| BsaWI | WCCGGW | 2 cut(s) | 69, 274 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 281, 509 |
| Bse118I | RCCGGY | 1 cut(s) | 69 |
| Bse1I | ACTGG | 1 cut(s) | 411 |
| BseBI | CCWGG | 1 cut(s) | 476 |
| BseDI | CCNNGG | 2 cut(s) | 27, 546 |
| BseGI | GGATG | 1 cut(s) | 45 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 281, 509 |
| BseMII | CTCAG | 1 cut(s) | 607 |
| BseNI | ACTGG | 1 cut(s) | 411 |
| BseRI | GAGGAG | 4 cut(s) | 44, 47, 379, 480 |
| BseXI | GCAGC | 1 cut(s) | 65 |
| BseYI | CCCAGC | 1 cut(s) | 15 |
| BshFI | GGCC | 1 cut(s) | 111 |
| BshTI | ACCGGT | 1 cut(s) | 69 |
| BsiHKAI | GWGCWC | 1 cut(s) | 594 |
| BsiHKCI | CYCGRG | 1 cut(s) | 523 |
| BsiSI | CCGG | 3 cut(s) | 57, 70, 275 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 281, 509 |
| BsmAI | GTCTC | 1 cut(s) | 602 |
| BsnI | GGCC | 1 cut(s) | 111 |
| BsoBI | CYCGRG | 1 cut(s) | 523 |
| Bsp1286I | GDGCHC | 2 cut(s) | 79, 594 |
| Bsp143I | GATC | 8 cut(s) | 162, 192, 284, 292, 305, 332, 340, 469 |
| BspACI | CCGC | 3 cut(s) | 86, 558, 567 |
| BspANI | GGCC | 1 cut(s) | 111 |
| BspCNI | CTCAG | 1 cut(s) | 606 |
| BspLI | GGNNCC | 3 cut(s) | 78, 221, 307 |
| BspPI | GGATC | 4 cut(s) | 292, 300, 313, 327 |
| BsrFI | RCCGGY | 1 cut(s) | 69 |
| BsrI | ACTGG | 1 cut(s) | 411 |
| BssAI | RCCGGY | 1 cut(s) | 69 |
| BssECI | CCNNGG | 2 cut(s) | 27, 546 |
| BssMI | GATC | 8 cut(s) | 162, 192, 284, 292, 305, 332, 340, 469 |
| BssSI | CACGAG | 1 cut(s) | 237 |
| Bst2BI | CACGAG | 1 cut(s) | 237 |
| Bst2UI | CCWGG | 1 cut(s) | 476 |
| Bst4CI | ACNGT | 1 cut(s) | 183 |
| BstBAI | YACGTR | 1 cut(s) | 359 |
| BstDEI | CTNAG | 3 cut(s) | 95, 593, 627 |
| BstF5I | GGATG | 1 cut(s) | 45 |
| BstKTI | GATC | 8 cut(s) | 165, 195, 287, 295, 308, 335, 343, 472 |
| BstMAI | GTCTC | 1 cut(s) | 602 |
| BstMBI | GATC | 8 cut(s) | 162, 192, 284, 292, 305, 332, 340, 469 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 564, 623 |
| BstNI | CCWGG | 1 cut(s) | 476 |
| BstSCI | CCNGG | 2 cut(s) | 56, 474 |
| BstSFI | CTRYAG | 1 cut(s) | 607 |
| BstV1I | GCAGC | 1 cut(s) | 65 |
| BstV2I | GAAGAC | 1 cut(s) | 542 |
| BstX2I | RGATCY | 4 cut(s) | 162, 284, 305, 332 |
| BstYI | RGATCY | 4 cut(s) | 162, 284, 305, 332 |
| BsuRI | GGCC | 1 cut(s) | 111 |
| BtsCI | GGATG | 1 cut(s) | 45 |
| Cfr10I | RCCGGY | 1 cut(s) | 69 |
| Cfr13I | GGNCC | 1 cut(s) | 109 |
| Csp6I | GTAC | 2 cut(s) | 136, 414 |
| CspAI | ACCGGT | 1 cut(s) | 69 |
| CviAII | CATG | 5 cut(s) | 451, 505, 509, 532, 622 |
| CviJI | RGCY | 9 cut(s) | 14, 56, 77, 111, 236, 366, 573, 592, 626 |
| CviKI_1 | RGCY | 9 cut(s) | 14, 56, 77, 111, 236, 366, 573, 592, 626 |
| CviQI | GTAC | 2 cut(s) | 136, 414 |
| DdeI | CTNAG | 3 cut(s) | 95, 593, 627 |
| DpnI | GATC | 8 cut(s) | 164, 194, 286, 294, 307, 334, 342, 471 |
| DpnII | GATC | 8 cut(s) | 162, 192, 284, 292, 305, 332, 340, 469 |
| Ecl136II | GAGCTC | 1 cut(s) | 592 |
| Eco24I | GRGCYC | 2 cut(s) | 79, 594 |
| Eco53kI | GAGCTC | 1 cut(s) | 592 |
| Eco72I | CACGTG | 1 cut(s) | 359 |
| Eco88I | CYCGRG | 1 cut(s) | 523 |
| EcoICRI | GAGCTC | 1 cut(s) | 592 |
| EcoO109I | RGGNCCY | 1 cut(s) | 109 |
| EcoRII | CCWGG | 1 cut(s) | 474 |
| EcoT22I | ATGCAT | 1 cut(s) | 510 |
| EcoT38I | GRGCYC | 2 cut(s) | 79, 594 |
| FaeI | CATG | 5 cut(s) | 454, 508, 512, 535, 625 |
| FatI | CATG | 5 cut(s) | 450, 504, 508, 531, 621 |
| Fnu4HI | GCNGC | 1 cut(s) | 54 |
| FokI | GGATG | 1 cut(s) | 32 |
| FriOI | GRGCYC | 2 cut(s) | 79, 594 |
| Fsp4HI | GCNGC | 1 cut(s) | 54 |
| FspBI | CTAG | 1 cut(s) | 312 |
| GluI | GCNGC | 1 cut(s) | 54 |
| GsaI | CCCAGC | 1 cut(s) | 19 |
| GsuI | CTGGAG | 1 cut(s) | 129 |
| HaeIII | GGCC | 1 cut(s) | 111 |
| HapII | CCGG | 3 cut(s) | 57, 70, 275 |
| Hin1II | CATG | 5 cut(s) | 454, 508, 512, 535, 625 |
| HincII | GTYRAC | 1 cut(s) | 376 |
| HindII | GTYRAC | 1 cut(s) | 376 |
| HinfI | GANTC | 2 cut(s) | 99, 154 |
| HpaII | CCGG | 3 cut(s) | 57, 70, 275 |
| HphI | GGTGA | 3 cut(s) | 384, 464, 524 |
| Hpy166II | GTNNAC | 1 cut(s) | 376 |
| Hpy188I | TCNGA | 3 cut(s) | 177, 267, 547 |
| Hpy188III | TCNNGA | 5 cut(s) | 146, 158, 223, 239, 290 |
| Hpy8I | GTNNAC | 1 cut(s) | 376 |
| HpyAV | CCTTC | 4 cut(s) | 179, 250, 406, 500 |
| HpyCH4III | ACNGT | 1 cut(s) | 183 |
| HpyCH4IV | ACGT | 3 cut(s) | 207, 270, 358 |
| HpyCH4V | TGCA | 2 cut(s) | 508, 617 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 564, 623 |
| HpyF3I | CTNAG | 3 cut(s) | 95, 593, 627 |
| HpySE526I | ACGT | 3 cut(s) | 207, 270, 358 |
| Hsp92II | CATG | 5 cut(s) | 454, 508, 512, 535, 625 |
| Kzo9I | GATC | 8 cut(s) | 162, 192, 284, 292, 305, 332, 340, 469 |
| LmnI | GCTCC | 1 cut(s) | 82 |
| Lsp1109I | GCAGC | 1 cut(s) | 65 |
| LweI | GCATC | 2 cut(s) | 54, 604 |
| MaeI | CTAG | 1 cut(s) | 312 |
| MaeII | ACGT | 3 cut(s) | 207, 270, 358 |
| MaeIII | GTNAC | 2 cut(s) | 65, 354 |
| MalI | GATC | 8 cut(s) | 164, 194, 286, 294, 307, 334, 342, 471 |
| MboI | GATC | 8 cut(s) | 162, 192, 284, 292, 305, 332, 340, 469 |
| MboII | GAAGA | 1 cut(s) | 547 |
| MflI | RGATCY | 4 cut(s) | 162, 284, 305, 332 |
| MhlI | GDGCHC | 2 cut(s) | 79, 594 |
| MluCI | AATT | 3 cut(s) | 5, 260, 298 |
| Mph1103I | ATGCAT | 1 cut(s) | 510 |
| MroXI | GAANNNNTTC | 1 cut(s) | 489 |
| MseI | TTAA | 1 cut(s) | 132 |
| MspI | CCGG | 3 cut(s) | 57, 70, 275 |
| MspR9I | CCNGG | 2 cut(s) | 58, 476 |
| MvaI | CCWGG | 1 cut(s) | 476 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 564, 623 |
| NciI | CCSGG | 1 cut(s) | 58 |
| NdeII | GATC | 8 cut(s) | 162, 192, 284, 292, 305, 332, 340, 469 |
| NlaIII | CATG | 5 cut(s) | 454, 508, 512, 535, 625 |
| NlaIV | GGNNCC | 3 cut(s) | 78, 221, 307 |
| NmuCI | GTSAC | 1 cut(s) | 354 |
| NsiI | ATGCAT | 1 cut(s) | 510 |
| PdmI | GAANNNNTTC | 1 cut(s) | 489 |
| PfeI | GAWTC | 2 cut(s) | 99, 154 |
| PinAI | ACCGGT | 1 cut(s) | 69 |
| PkrI | GCNGC | 1 cut(s) | 55 |
| PmaCI | CACGTG | 1 cut(s) | 359 |
| PmlI | CACGTG | 1 cut(s) | 359 |
| Ppu21I | YACGTR | 1 cut(s) | 359 |
| Psp124BI | GAGCTC | 1 cut(s) | 594 |
| Psp1406I | AACGTT | 2 cut(s) | 207, 270 |
| Psp6I | CCWGG | 1 cut(s) | 474 |
| PspCI | CACGTG | 1 cut(s) | 359 |
| PspFI | CCCAGC | 1 cut(s) | 15 |
| PspGI | CCWGG | 1 cut(s) | 474 |
| PspN4I | GGNNCC | 3 cut(s) | 78, 221, 307 |
| PspPI | GGNCC | 1 cut(s) | 109 |
| PsuI | RGATCY | 4 cut(s) | 162, 284, 305, 332 |
| RsaI | GTAC | 2 cut(s) | 137, 415 |
| RsaNI | GTAC | 2 cut(s) | 136, 414 |
| SacI | GAGCTC | 1 cut(s) | 594 |
| SaqAI | TTAA | 1 cut(s) | 132 |
| SatI | GCNGC | 1 cut(s) | 54 |
| Sau3AI | GATC | 8 cut(s) | 162, 192, 284, 292, 305, 332, 340, 469 |
| Sau96I | GGNCC | 1 cut(s) | 109 |
| ScaI | AGTACT | 1 cut(s) | 415 |
| ScrFI | CCNGG | 2 cut(s) | 58, 476 |
| SduI | GDGCHC | 2 cut(s) | 79, 594 |
| SetI | ASST | 9 cut(s) | 210, 231, 273, 361, 368, 422, 556, 575, 594 |
| SfaNI | GCATC | 2 cut(s) | 54, 604 |
| SfcI | CTRYAG | 1 cut(s) | 607 |
| SmlI | CTYRAG | 3 cut(s) | 104, 230, 587 |
| SmoI | CTYRAG | 3 cut(s) | 104, 230, 587 |
| SpeI | ACTAGT | 1 cut(s) | 311 |
| Sse9I | AATT | 3 cut(s) | 5, 260, 298 |
| SsiI | CCGC | 3 cut(s) | 86, 558, 567 |
| SspMI | CTAG | 1 cut(s) | 312 |
| SstI | GAGCTC | 1 cut(s) | 594 |
| StyD4I | CCNGG | 2 cut(s) | 56, 474 |
| TaaI | ACNGT | 1 cut(s) | 183 |
| TaiI | ACGT | 3 cut(s) | 210, 273, 361 |
| TaqI | TCGA | 2 cut(s) | 195, 291 |
| TasI | AATT | 3 cut(s) | 5, 260, 298 |
| TatI | WGTACW | 1 cut(s) | 413 |
| TfiI | GAWTC | 2 cut(s) | 99, 154 |
| Tru1I | TTAA | 1 cut(s) | 132 |
| Tru9I | TTAA | 1 cut(s) | 132 |
| TseFI | GTSAC | 1 cut(s) | 354 |
| TseI | GCWGC | 1 cut(s) | 53 |
| Tsp45I | GTSAC | 1 cut(s) | 354 |
| TspDTI | ATGAA | 3 cut(s) | 161, 439, 548 |
| XapI | RAATTY | 1 cut(s) | 260 |
| XmnI | GAANNNNTTC | 1 cut(s) | 489 |
| XspI | CTAG | 1 cut(s) | 312 |
| ZrmI | AGTACT | 1 cut(s) | 415 |
| Zsp2I | ATGCAT | 1 cut(s) | 510 |