Homeodomain
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 197 |
| AccII | CGCG | 1 cut(s) | 231 |
| AciI | CCGC | 1 cut(s) | 627 |
| AclI | AACGTT | 1 cut(s) | 261 |
| AclWI | GGATC | 5 cut(s) | 283, 291, 304, 379, 410 |
| AcsI | RAATTY | 1 cut(s) | 251 |
| AcvI | CACGTG | 1 cut(s) | 398 |
| AfaI | GTAC | 3 cut(s) | 67, 364, 454 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 62, 548 |
| AflII | CTTAAG | 1 cut(s) | 221 |
| AflIII | ACRYGT | 1 cut(s) | 397 |
| AgeI | ACCGGT | 1 cut(s) | 62 |
| AgsI | TTSAA | 2 cut(s) | 83, 439 |
| AhlI | ACTAGT | 1 cut(s) | 350 |
| AjnI | CCWGG | 2 cut(s) | 96, 513 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 546, 578 |
| AluBI | AGCT | 4 cut(s) | 103, 306, 405, 661 |
| AluI | AGCT | 4 cut(s) | 103, 306, 405, 661 |
| Alw21I | GWGCWC | 3 cut(s) | 105, 549, 663 |
| Alw26I | GTCTC | 1 cut(s) | 518 |
| Alw44I | GTGCAC | 1 cut(s) | 545 |
| AlwI | GGATC | 5 cut(s) | 283, 291, 304, 379, 410 |
| AoxI | GGCC | 1 cut(s) | 49 |
| ApaLI | GTGCAC | 1 cut(s) | 545 |
| ApeKI | GCWGC | 1 cut(s) | 19 |
| ApoI | RAATTY | 1 cut(s) | 251 |
| AsiGI | ACCGGT | 1 cut(s) | 62 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 200 |
| AspLEI | GCGC | 2 cut(s) | 413, 599 |
| AspS9I | GGNCC | 1 cut(s) | 324 |
| AsuC2I | CCSGG | 1 cut(s) | 24 |
| AsuHPI | GGTGA | 2 cut(s) | 503, 563 |
| AvaII | GGWCC | 1 cut(s) | 324 |
| BaeGI | GKGCMC | 1 cut(s) | 549 |
| BamHI | GGATCC | 1 cut(s) | 296 |
| BanII | GRGCYC | 2 cut(s) | 105, 663 |
| BbrPI | CACGTG | 1 cut(s) | 398 |
| BbsI | GAAGAC | 3 cut(s) | 152, 193, 581 |
| Bbv12I | GWGCWC | 3 cut(s) | 105, 549, 663 |
| BbvI | GCAGC | 1 cut(s) | 31 |
| BccI | CCATC | 1 cut(s) | 311 |
| BciT130I | CCWGG | 2 cut(s) | 98, 515 |
| BcnI | CCSGG | 1 cut(s) | 24 |
| BcoDI | GTCTC | 1 cut(s) | 518 |
| BcuI | ACTAGT | 1 cut(s) | 350 |
| BfaI | CTAG | 2 cut(s) | 303, 351 |
| BfoI | RGCGCY | 1 cut(s) | 414 |
| BfrI | CTTAAG | 1 cut(s) | 221 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 48 |
| BglII | AGATCT | 1 cut(s) | 153 |
| BisI | GCNGC | 1 cut(s) | 20 |
| BlpI | GCTNAGC | 1 cut(s) | 662 |
| BlsI | GCNGC | 1 cut(s) | 21 |
| BmcAI | AGTACT | 1 cut(s) | 454 |
| Bme1390I | CCNGG | 3 cut(s) | 24, 98, 515 |
| Bme18I | GGWCC | 1 cut(s) | 324 |
| BmgT120I | GGNCC | 1 cut(s) | 324 |
| BmiI | GGNNCC | 3 cut(s) | 212, 298, 346 |
| BmrFI | CCNGG | 3 cut(s) | 24, 98, 515 |
| BpiI | GAAGAC | 3 cut(s) | 152, 193, 581 |
| BpmI | CTGGAG | 2 cut(s) | 80, 120 |
| Bpu10I | CCTNAGC | 1 cut(s) | 622 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 662 |
| BpuEI | CTTGAG | 1 cut(s) | 677 |
| BpuMI | CCSGG | 1 cut(s) | 24 |
| BsaAI | YACGTR | 1 cut(s) | 398 |
| BsaJI | CCNNGG | 2 cut(s) | 562, 585 |
| BsaWI | WCCGGW | 2 cut(s) | 62, 614 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 52, 82 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 62, 548 |
| Bse118I | RCCGGY | 1 cut(s) | 62 |
| Bse1I | ACTGG | 3 cut(s) | 77, 364, 450 |
| BseBI | CCWGG | 2 cut(s) | 98, 515 |
| BseDI | CCNNGG | 2 cut(s) | 562, 585 |
| BseGI | GGATG | 2 cut(s) | 581, 674 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 62, 548 |
| BseMII | CTCAG | 2 cut(s) | 636, 676 |
| BseNI | ACTGG | 3 cut(s) | 77, 364, 450 |
| BseRI | GAGGAG | 1 cut(s) | 519 |
| BseSI | GKGCMC | 1 cut(s) | 549 |
| BseXI | GCAGC | 1 cut(s) | 31 |
| Bsh1236I | CGCG | 1 cut(s) | 231 |
| BshFI | GGCC | 1 cut(s) | 51 |
| BshTI | ACCGGT | 1 cut(s) | 62 |
| BsiHKAI | GWGCWC | 3 cut(s) | 105, 549, 663 |
| BsiSI | CCGG | 3 cut(s) | 23, 63, 615 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 62, 548 |
| BsmAI | GTCTC | 1 cut(s) | 518 |
| BsnI | GGCC | 1 cut(s) | 51 |
| Bsp1286I | GDGCHC | 3 cut(s) | 105, 549, 663 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 662 |
| Bsp68I | TCGCGA | 1 cut(s) | 231 |
| BspACI | CCGC | 1 cut(s) | 627 |
| BspANI | GGCC | 1 cut(s) | 51 |
| BspCNI | CTCAG | 2 cut(s) | 635, 675 |
| BspFNI | CGCG | 1 cut(s) | 231 |
| BspLI | GGNNCC | 3 cut(s) | 212, 298, 346 |
| BspPI | GGATC | 5 cut(s) | 283, 291, 304, 379, 410 |
| BspTI | CTTAAG | 1 cut(s) | 221 |
| BsrFI | RCCGGY | 1 cut(s) | 62 |
| BsrI | ACTGG | 3 cut(s) | 77, 364, 450 |
| BssAI | RCCGGY | 1 cut(s) | 62 |
| BssECI | CCNNGG | 2 cut(s) | 562, 585 |
| BssT1I | CCWWGG | 1 cut(s) | 562 |
| Bst2UI | CCWGG | 2 cut(s) | 98, 515 |
| Bst4CI | ACNGT | 3 cut(s) | 174, 551, 638 |
| Bst6I | CTCTTC | 2 cut(s) | 440, 534 |
| BstAFI | CTTAAG | 1 cut(s) | 221 |
| BstBAI | YACGTR | 1 cut(s) | 398 |
| BstC8I | GCNNGC | 1 cut(s) | 229 |
| BstDEI | CTNAG | 3 cut(s) | 86, 622, 662 |
| BstEII | GGTNACC | 1 cut(s) | 566 |
| BstF5I | GGATG | 2 cut(s) | 581, 674 |
| BstFNI | CGCG | 1 cut(s) | 231 |
| BstH2I | RGCGCY | 1 cut(s) | 414 |
| BstHHI | GCGC | 2 cut(s) | 413, 599 |
| BstMAI | GTCTC | 1 cut(s) | 518 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 48 |
| BstNI | CCWGG | 2 cut(s) | 98, 515 |
| BstPI | GGTNACC | 1 cut(s) | 566 |
| BstSCI | CCNGG | 3 cut(s) | 22, 96, 513 |
| BstSLI | GKGCMC | 1 cut(s) | 549 |
| BstUI | CGCG | 1 cut(s) | 231 |
| BstV1I | GCAGC | 1 cut(s) | 31 |
| BstV2I | GAAGAC | 3 cut(s) | 152, 193, 581 |
| BstX2I | RGATCY | 4 cut(s) | 153, 275, 296, 371 |
| BstYI | RGATCY | 4 cut(s) | 153, 275, 296, 371 |
| BsuRI | GGCC | 1 cut(s) | 51 |
| BtsCI | GGATG | 2 cut(s) | 581, 674 |
| BtsIMutI | CAGTG | 1 cut(s) | 643 |
| BtuMI | TCGCGA | 1 cut(s) | 231 |
| Cac8I | GCNNGC | 1 cut(s) | 229 |
| CfoI | GCGC | 2 cut(s) | 413, 599 |
| Cfr10I | RCCGGY | 1 cut(s) | 62 |
| Cfr13I | GGNCC | 1 cut(s) | 324 |
| Csp6I | GTAC | 3 cut(s) | 66, 363, 453 |
| CspAI | ACCGGT | 1 cut(s) | 62 |
| CviAII | CATG | 1 cut(s) | 490 |
| CviQI | GTAC | 3 cut(s) | 66, 363, 453 |
| DdeI | CTNAG | 3 cut(s) | 86, 622, 662 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 197 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 197 |
| Eam1104I | CTCTTC | 2 cut(s) | 440, 534 |
| EarI | CTCTTC | 2 cut(s) | 440, 534 |
| Ecl136II | GAGCTC | 2 cut(s) | 103, 661 |
| Eco130I | CCWWGG | 1 cut(s) | 562 |
| Eco24I | GRGCYC | 2 cut(s) | 105, 663 |
| Eco47I | GGWCC | 1 cut(s) | 324 |
| Eco53kI | GAGCTC | 2 cut(s) | 103, 661 |
| Eco72I | CACGTG | 1 cut(s) | 398 |
| Eco91I | GGTNACC | 1 cut(s) | 566 |
| EcoICRI | GAGCTC | 2 cut(s) | 103, 661 |
| EcoO65I | GGTNACC | 1 cut(s) | 566 |
| EcoRII | CCWGG | 2 cut(s) | 96, 513 |
| EcoT14I | CCWWGG | 1 cut(s) | 562 |
| EcoT38I | GRGCYC | 2 cut(s) | 105, 663 |
| ErhI | CCWWGG | 1 cut(s) | 562 |
| FaeI | CATG | 1 cut(s) | 493 |
| FaiI | YATR | 5 cut(s) | 111, 177, 408, 421, 491 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 185, 217 |
| FatI | CATG | 1 cut(s) | 489 |
| Fnu4HI | GCNGC | 1 cut(s) | 20 |
| FokI | GGATG | 2 cut(s) | 568, 661 |
| FriOI | GRGCYC | 2 cut(s) | 105, 663 |
| Fsp4HI | GCNGC | 1 cut(s) | 20 |
| FspBI | CTAG | 2 cut(s) | 303, 351 |
| GlaI | GCGC | 2 cut(s) | 412, 598 |
| GluI | GCNGC | 1 cut(s) | 20 |
| GsuI | CTGGAG | 2 cut(s) | 80, 120 |
| HaeII | RGCGCY | 1 cut(s) | 414 |
| HaeIII | GGCC | 1 cut(s) | 51 |
| HapII | CCGG | 3 cut(s) | 23, 63, 615 |
| HhaI | GCGC | 2 cut(s) | 413, 599 |
| Hin1II | CATG | 1 cut(s) | 493 |
| Hin6I | GCGC | 2 cut(s) | 411, 597 |
| HinP1I | GCGC | 2 cut(s) | 411, 597 |
| HinfI | GANTC | 2 cut(s) | 90, 526 |
| HpaII | CCGG | 3 cut(s) | 23, 63, 615 |
| HphI | GGTGA | 2 cut(s) | 503, 563 |
| Hpy166II | GTNNAC | 1 cut(s) | 547 |
| Hpy188I | TCNGA | 3 cut(s) | 168, 258, 586 |
| Hpy188III | TCNNGA | 7 cut(s) | 137, 214, 230, 281, 523, 656, 678 |
| Hpy8I | GTNNAC | 1 cut(s) | 547 |
| HpyAV | CCTTC | 2 cut(s) | 436, 584 |
| HpyCH4III | ACNGT | 3 cut(s) | 174, 551, 638 |
| HpyCH4IV | ACGT | 4 cut(s) | 198, 261, 397, 558 |
| HpyCH4V | TGCA | 1 cut(s) | 547 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 48 |
| HpyF3I | CTNAG | 3 cut(s) | 86, 622, 662 |
| HpySE526I | ACGT | 4 cut(s) | 198, 261, 397, 558 |
| Hsp92II | CATG | 1 cut(s) | 493 |
| HspAI | GCGC | 2 cut(s) | 411, 597 |
| LmnI | GCTCC | 1 cut(s) | 100 |
| Lsp1109I | GCAGC | 1 cut(s) | 31 |
| MaeI | CTAG | 2 cut(s) | 303, 351 |
| MaeII | ACGT | 4 cut(s) | 198, 261, 397, 558 |
| MaeIII | GTNAC | 4 cut(s) | 393, 566, 605, 629 |
| MboII | GAAGA | 5 cut(s) | 152, 193, 427, 521, 586 |
| MflI | RGATCY | 4 cut(s) | 153, 275, 296, 371 |
| MhlI | GDGCHC | 3 cut(s) | 105, 549, 663 |
| MluCI | AATT | 2 cut(s) | 251, 289 |
| MlyI | GAGTC | 1 cut(s) | 520 |
| MroXI | GAANNNNTTC | 1 cut(s) | 200 |
| MseI | TTAA | 2 cut(s) | 123, 222 |
| MspCI | CTTAAG | 1 cut(s) | 221 |
| MspI | CCGG | 3 cut(s) | 23, 63, 615 |
| MspR9I | CCNGG | 3 cut(s) | 24, 98, 515 |
| MvaI | CCWGG | 2 cut(s) | 98, 515 |
| MvnI | CGCG | 1 cut(s) | 231 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 48 |
| NciI | CCSGG | 1 cut(s) | 24 |
| NlaIII | CATG | 1 cut(s) | 493 |
| NlaIV | GGNNCC | 3 cut(s) | 212, 298, 346 |
| NmuCI | GTSAC | 1 cut(s) | 393 |
| NruI | TCGCGA | 1 cut(s) | 231 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 555 |
| PdmI | GAANNNNTTC | 1 cut(s) | 200 |
| PfeI | GAWTC | 1 cut(s) | 90 |
| PfoI | TCCNGGA | 1 cut(s) | 96 |
| PinAI | ACCGGT | 1 cut(s) | 62 |
| PkrI | GCNGC | 1 cut(s) | 21 |
| PleI | GAGTC | 1 cut(s) | 520 |
| PmaCI | CACGTG | 1 cut(s) | 398 |
| PmlI | CACGTG | 1 cut(s) | 398 |
| PpsI | GAGTC | 1 cut(s) | 520 |
| Ppu21I | YACGTR | 1 cut(s) | 398 |
| Psp124BI | GAGCTC | 2 cut(s) | 105, 663 |
| Psp1406I | AACGTT | 1 cut(s) | 261 |
| Psp6I | CCWGG | 2 cut(s) | 96, 513 |
| PspCI | CACGTG | 1 cut(s) | 398 |
| PspEI | GGTNACC | 1 cut(s) | 566 |
| PspGI | CCWGG | 2 cut(s) | 96, 513 |
| PspN4I | GGNNCC | 3 cut(s) | 212, 298, 346 |
| PspPI | GGNCC | 1 cut(s) | 324 |
| PsuI | RGATCY | 4 cut(s) | 153, 275, 296, 371 |
| RruI | TCGCGA | 1 cut(s) | 231 |
| RsaI | GTAC | 3 cut(s) | 67, 364, 454 |
| RsaNI | GTAC | 3 cut(s) | 66, 363, 453 |
| SacI | GAGCTC | 2 cut(s) | 105, 663 |
| SaqAI | TTAA | 2 cut(s) | 123, 222 |
| SatI | GCNGC | 1 cut(s) | 20 |
| Sau96I | GGNCC | 1 cut(s) | 324 |
| ScaI | AGTACT | 1 cut(s) | 454 |
| SchI | GAGTC | 1 cut(s) | 520 |
| ScrFI | CCNGG | 3 cut(s) | 24, 98, 515 |
| SduI | GDGCHC | 3 cut(s) | 105, 549, 663 |
| SinI | GGWCC | 1 cut(s) | 324 |
| SmlI | CTYRAG | 2 cut(s) | 221, 656 |
| SmoI | CTYRAG | 2 cut(s) | 221, 656 |
| SpeI | ACTAGT | 1 cut(s) | 350 |
| Sse9I | AATT | 2 cut(s) | 251, 289 |
| SsiI | CCGC | 1 cut(s) | 627 |
| SspMI | CTAG | 2 cut(s) | 303, 351 |
| SstI | GAGCTC | 2 cut(s) | 105, 663 |
| StyD4I | CCNGG | 3 cut(s) | 22, 96, 513 |
| StyI | CCWWGG | 1 cut(s) | 562 |
| TaaI | ACNGT | 3 cut(s) | 174, 551, 638 |
| TaiI | ACGT | 4 cut(s) | 201, 264, 400, 561 |
| TaqI | TCGA | 3 cut(s) | 186, 282, 522 |
| TasI | AATT | 2 cut(s) | 251, 289 |
| TatI | WGTACW | 1 cut(s) | 452 |
| TfiI | GAWTC | 1 cut(s) | 90 |
| Tru1I | TTAA | 2 cut(s) | 123, 222 |
| Tru9I | TTAA | 2 cut(s) | 123, 222 |
| TscAI | CASTG | 1 cut(s) | 643 |
| TseFI | GTSAC | 1 cut(s) | 393 |
| TseI | GCWGC | 1 cut(s) | 19 |
| Tsp45I | GTSAC | 1 cut(s) | 393 |
| TspDTI | ATGAA | 2 cut(s) | 152, 478 |
| TspGWI | ACGGA | 1 cut(s) | 384 |
| TspRI | CASTG | 1 cut(s) | 643 |
| Vha464I | CTTAAG | 1 cut(s) | 221 |
| VneI | GTGCAC | 1 cut(s) | 545 |
| VpaK11BI | GGWCC | 1 cut(s) | 324 |
| XapI | RAATTY | 1 cut(s) | 251 |
| XmnI | GAANNNNTTC | 1 cut(s) | 200 |
| XspI | CTAG | 2 cut(s) | 303, 351 |
| ZrmI | AGTACT | 1 cut(s) | 454 |