Homeodomain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 278 |
| AccIII | TCCGGA | 1 cut(s) | 758 |
| AciI | CCGC | 1 cut(s) | 238 |
| AclI | AACGTT | 1 cut(s) | 342 |
| AclWI | GGATC | 6 cut(s) | 229, 364, 372, 385, 420, 447 |
| AcsI | RAATTY | 2 cut(s) | 332, 466 |
| AcvI | CACGTG | 1 cut(s) | 479 |
| AfaI | GTAC | 3 cut(s) | 445, 535, 692 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 141, 629, 702 |
| AflIII | ACRYGT | 1 cut(s) | 478 |
| AgeI | ACCGGT | 1 cut(s) | 141 |
| AgsI | TTSAA | 2 cut(s) | 20, 520 |
| AhlI | ACTAGT | 2 cut(s) | 383, 440 |
| AjnI | CCWGG | 2 cut(s) | 177, 594 |
| AluBI | AGCT | 3 cut(s) | 184, 420, 742 |
| AluI | AGCT | 3 cut(s) | 184, 420, 742 |
| Alw26I | GTCTC | 2 cut(s) | 599, 752 |
| AlwI | GGATC | 6 cut(s) | 229, 364, 372, 385, 420, 447 |
| Aor13HI | TCCGGA | 1 cut(s) | 758 |
| AoxI | GGCC | 1 cut(s) | 128 |
| ApoI | RAATTY | 2 cut(s) | 332, 466 |
| AseI | ATTAAT | 1 cut(s) | 525 |
| AsiGI | ACCGGT | 1 cut(s) | 141 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 281 |
| AsuC2I | CCSGG | 1 cut(s) | 103 |
| AsuHPI | GGTGA | 3 cut(s) | 504, 584, 644 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 682, 715 |
| BamHI | GGATCC | 1 cut(s) | 377 |
| BauI | CACGAG | 1 cut(s) | 309 |
| BbrPI | CACGTG | 1 cut(s) | 479 |
| BbsI | GAAGAC | 2 cut(s) | 274, 662 |
| BccI | CCATC | 2 cut(s) | 220, 389 |
| BciT130I | CCWGG | 2 cut(s) | 179, 596 |
| BcnI | CCSGG | 1 cut(s) | 103 |
| BcoDI | GTCTC | 2 cut(s) | 599, 752 |
| BcuI | ACTAGT | 2 cut(s) | 383, 440 |
| BfaI | CTAG | 3 cut(s) | 362, 384, 441 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 127 |
| BglII | AGATCT | 1 cut(s) | 364 |
| BmcAI | AGTACT | 2 cut(s) | 445, 535 |
| Bme1390I | CCNGG | 3 cut(s) | 103, 179, 596 |
| BmiI | GGNNCC | 4 cut(s) | 6, 293, 379, 427 |
| BmrFI | CCNGG | 3 cut(s) | 103, 179, 596 |
| BmsI | GCATC | 1 cut(s) | 99 |
| BpiI | GAAGAC | 2 cut(s) | 274, 662 |
| BpmI | CTGGAG | 2 cut(s) | 161, 201 |
| BpuEI | CTTGAG | 2 cut(s) | 287, 758 |
| BpuMI | CCSGG | 1 cut(s) | 103 |
| BsaAI | YACGTR | 1 cut(s) | 479 |
| BsaJI | CCNNGG | 3 cut(s) | 75, 643, 666 |
| BsaWI | WCCGGW | 3 cut(s) | 141, 695, 758 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 141, 629, 702 |
| Bse118I | RCCGGY | 1 cut(s) | 141 |
| Bse1I | ACTGG | 1 cut(s) | 531 |
| BseAI | TCCGGA | 1 cut(s) | 758 |
| BseBI | CCWGG | 2 cut(s) | 179, 596 |
| BseDI | CCNNGG | 3 cut(s) | 75, 643, 666 |
| BseGI | GGATG | 1 cut(s) | 90 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 141, 629, 702 |
| BseNI | ACTGG | 1 cut(s) | 531 |
| BseRI | GAGGAG | 5 cut(s) | 92, 499, 597, 600, 745 |
| BseYI | CCCAGC | 3 cut(s) | 39, 63, 702 |
| BshFI | GGCC | 1 cut(s) | 130 |
| BshTI | ACCGGT | 1 cut(s) | 141 |
| BsiSI | CCGG | 4 cut(s) | 102, 142, 696, 759 |
| BslFI | GGGAC | 1 cut(s) | 719 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 141, 629, 702 |
| BsmAI | GTCTC | 2 cut(s) | 599, 752 |
| BsmFI | GGGAC | 1 cut(s) | 719 |
| BsnI | GGCC | 1 cut(s) | 130 |
| Bsp13I | TCCGGA | 1 cut(s) | 758 |
| BspACI | CCGC | 1 cut(s) | 238 |
| BspANI | GGCC | 1 cut(s) | 130 |
| BspEI | TCCGGA | 1 cut(s) | 758 |
| BspHI | TCATGA | 1 cut(s) | 229 |
| BspLI | GGNNCC | 4 cut(s) | 6, 293, 379, 427 |
| BspPI | GGATC | 6 cut(s) | 229, 364, 372, 385, 420, 447 |
| BsrFI | RCCGGY | 1 cut(s) | 141 |
| BsrI | ACTGG | 1 cut(s) | 531 |
| BssAI | RCCGGY | 1 cut(s) | 141 |
| BssECI | CCNNGG | 3 cut(s) | 75, 643, 666 |
| BssSI | CACGAG | 1 cut(s) | 309 |
| BssT1I | CCWWGG | 1 cut(s) | 643 |
| Bst2BI | CACGAG | 1 cut(s) | 309 |
| Bst2UI | CCWGG | 2 cut(s) | 179, 596 |
| Bst4CI | ACNGT | 1 cut(s) | 632 |
| Bst6I | CTCTTC | 2 cut(s) | 21, 615 |
| BstBAI | YACGTR | 1 cut(s) | 479 |
| BstDEI | CTNAG | 4 cut(s) | 167, 416, 743, 777 |
| BstEII | GGTNACC | 1 cut(s) | 647 |
| BstF5I | GGATG | 1 cut(s) | 90 |
| BstMAI | GTCTC | 2 cut(s) | 599, 752 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 127, 773 |
| BstNI | CCWGG | 2 cut(s) | 179, 596 |
| BstPI | GGTNACC | 1 cut(s) | 647 |
| BstSCI | CCNGG | 3 cut(s) | 101, 177, 594 |
| BstV2I | GAAGAC | 2 cut(s) | 274, 662 |
| BstX2I | RGATCY | 6 cut(s) | 234, 356, 364, 377, 412, 452 |
| BstYI | RGATCY | 6 cut(s) | 234, 356, 364, 377, 412, 452 |
| BsuRI | GGCC | 1 cut(s) | 130 |
| BtsCI | GGATG | 1 cut(s) | 90 |
| CciI | TCATGA | 1 cut(s) | 229 |
| Cfr10I | RCCGGY | 1 cut(s) | 141 |
| Csp6I | GTAC | 3 cut(s) | 444, 534, 691 |
| CspAI | ACCGGT | 1 cut(s) | 141 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 700, 735 |
| CviAII | CATG | 4 cut(s) | 230, 571, 625, 772 |
| CviQI | GTAC | 3 cut(s) | 444, 534, 691 |
| DdeI | CTNAG | 4 cut(s) | 167, 416, 743, 777 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 278 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 278 |
| Eam1104I | CTCTTC | 2 cut(s) | 21, 615 |
| EarI | CTCTTC | 2 cut(s) | 21, 615 |
| EciI | GGCGGA | 1 cut(s) | 227 |
| Eco130I | CCWWGG | 1 cut(s) | 643 |
| Eco72I | CACGTG | 1 cut(s) | 479 |
| Eco91I | GGTNACC | 1 cut(s) | 647 |
| EcoO65I | GGTNACC | 1 cut(s) | 647 |
| EcoRII | CCWGG | 2 cut(s) | 177, 594 |
| EcoT14I | CCWWGG | 1 cut(s) | 643 |
| ErhI | CCWWGG | 1 cut(s) | 643 |
| FaeI | CATG | 4 cut(s) | 233, 574, 628, 775 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 266, 298 |
| FaqI | GGGAC | 1 cut(s) | 719 |
| FatI | CATG | 4 cut(s) | 229, 570, 624, 771 |
| FauNDI | CATATG | 1 cut(s) | 682 |
| FokI | GGATG | 1 cut(s) | 77 |
| FspBI | CTAG | 3 cut(s) | 362, 384, 441 |
| GsaI | CCCAGC | 3 cut(s) | 43, 67, 706 |
| GsuI | CTGGAG | 2 cut(s) | 161, 201 |
| HaeIII | GGCC | 1 cut(s) | 130 |
| HapII | CCGG | 4 cut(s) | 102, 142, 696, 759 |
| Hin1II | CATG | 4 cut(s) | 233, 574, 628, 775 |
| HincII | GTYRAC | 1 cut(s) | 496 |
| HindII | GTYRAC | 1 cut(s) | 496 |
| HindIII | AAGCTT | 1 cut(s) | 418 |
| HinfI | GANTC | 4 cut(s) | 148, 171, 226, 607 |
| HpaII | CCGG | 4 cut(s) | 102, 142, 696, 759 |
| HphI | GGTGA | 3 cut(s) | 504, 584, 644 |
| Hpy166II | GTNNAC | 2 cut(s) | 147, 496 |
| Hpy188I | TCNGA | 2 cut(s) | 339, 667 |
| Hpy188III | TCNNGA | 8 cut(s) | 218, 230, 295, 311, 362, 604, 737, 759 |
| Hpy8I | GTNNAC | 2 cut(s) | 147, 496 |
| HpyAV | CCTTC | 3 cut(s) | 251, 526, 665 |
| HpyCH4III | ACNGT | 1 cut(s) | 632 |
| HpyCH4IV | ACGT | 3 cut(s) | 279, 342, 478 |
| HpyCH4V | TGCA | 3 cut(s) | 250, 628, 729 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 127, 773 |
| HpyF3I | CTNAG | 4 cut(s) | 167, 416, 743, 777 |
| HpySE526I | ACGT | 3 cut(s) | 279, 342, 478 |
| Hsp92II | CATG | 4 cut(s) | 233, 574, 628, 775 |
| Kpn2I | TCCGGA | 1 cut(s) | 758 |
| LmnI | GCTCC | 1 cut(s) | 181 |
| LweI | GCATC | 1 cut(s) | 99 |
| MaeI | CTAG | 3 cut(s) | 362, 384, 441 |
| MaeII | ACGT | 3 cut(s) | 279, 342, 478 |
| MaeIII | GTNAC | 3 cut(s) | 30, 474, 647 |
| MboII | GAAGA | 4 cut(s) | 8, 274, 602, 667 |
| MflI | RGATCY | 6 cut(s) | 234, 356, 364, 377, 412, 452 |
| MluCI | AATT | 4 cut(s) | 53, 332, 370, 466 |
| MlyI | GAGTC | 2 cut(s) | 142, 601 |
| MroI | TCCGGA | 1 cut(s) | 758 |
| MroXI | GAANNNNTTC | 1 cut(s) | 281 |
| MseI | TTAA | 2 cut(s) | 204, 525 |
| MspI | CCGG | 4 cut(s) | 102, 142, 696, 759 |
| MspR9I | CCNGG | 3 cut(s) | 103, 179, 596 |
| MvaI | CCWGG | 2 cut(s) | 179, 596 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 127, 773 |
| NciI | CCSGG | 1 cut(s) | 103 |
| NdeI | CATATG | 1 cut(s) | 682 |
| NlaIII | CATG | 4 cut(s) | 233, 574, 628, 775 |
| NlaIV | GGNNCC | 4 cut(s) | 6, 293, 379, 427 |
| NmuCI | GTSAC | 1 cut(s) | 474 |
| PagI | TCATGA | 1 cut(s) | 229 |
| PdmI | GAANNNNTTC | 1 cut(s) | 281 |
| PfeI | GAWTC | 2 cut(s) | 171, 226 |
| PfoI | TCCNGGA | 1 cut(s) | 177 |
| PinAI | ACCGGT | 1 cut(s) | 141 |
| PleI | GAGTC | 2 cut(s) | 142, 601 |
| PmaCI | CACGTG | 1 cut(s) | 479 |
| PmlI | CACGTG | 1 cut(s) | 479 |
| PpsI | GAGTC | 2 cut(s) | 142, 601 |
| Ppu21I | YACGTR | 1 cut(s) | 479 |
| PshBI | ATTAAT | 1 cut(s) | 525 |
| Psp1406I | AACGTT | 1 cut(s) | 342 |
| Psp6I | CCWGG | 2 cut(s) | 177, 594 |
| PspCI | CACGTG | 1 cut(s) | 479 |
| PspEI | GGTNACC | 1 cut(s) | 647 |
| PspFI | CCCAGC | 3 cut(s) | 39, 63, 702 |
| PspGI | CCWGG | 2 cut(s) | 177, 594 |
| PspN4I | GGNNCC | 4 cut(s) | 6, 293, 379, 427 |
| PsuI | RGATCY | 6 cut(s) | 234, 356, 364, 377, 412, 452 |
| RsaI | GTAC | 3 cut(s) | 445, 535, 692 |
| RsaNI | GTAC | 3 cut(s) | 444, 534, 691 |
| SaqAI | TTAA | 2 cut(s) | 204, 525 |
| ScaI | AGTACT | 2 cut(s) | 445, 535 |
| SchI | GAGTC | 2 cut(s) | 142, 601 |
| ScrFI | CCNGG | 3 cut(s) | 103, 179, 596 |
| SfaNI | GCATC | 1 cut(s) | 99 |
| SmlI | CTYRAG | 2 cut(s) | 302, 737 |
| SmoI | CTYRAG | 2 cut(s) | 302, 737 |
| SpeI | ACTAGT | 2 cut(s) | 383, 440 |
| Sse9I | AATT | 4 cut(s) | 53, 332, 370, 466 |
| SsiI | CCGC | 1 cut(s) | 238 |
| SspMI | CTAG | 3 cut(s) | 362, 384, 441 |
| StyD4I | CCNGG | 3 cut(s) | 101, 177, 594 |
| StyI | CCWWGG | 1 cut(s) | 643 |
| TaaI | ACNGT | 1 cut(s) | 632 |
| TaiI | ACGT | 3 cut(s) | 282, 345, 481 |
| TaqI | TCGA | 3 cut(s) | 267, 389, 603 |
| TasI | AATT | 4 cut(s) | 53, 332, 370, 466 |
| TatI | WGTACW | 2 cut(s) | 443, 533 |
| TfiI | GAWTC | 2 cut(s) | 171, 226 |
| Tru1I | TTAA | 2 cut(s) | 204, 525 |
| Tru9I | TTAA | 2 cut(s) | 204, 525 |
| TseFI | GTSAC | 1 cut(s) | 474 |
| Tsp45I | GTSAC | 1 cut(s) | 474 |
| TspDTI | ATGAA | 3 cut(s) | 218, 233, 559 |
| VspI | ATTAAT | 1 cut(s) | 525 |
| XapI | RAATTY | 2 cut(s) | 332, 466 |
| XbaI | TCTAGA | 1 cut(s) | 361 |
| XmnI | GAANNNNTTC | 1 cut(s) | 281 |
| XspI | CTAG | 3 cut(s) | 362, 384, 441 |
| ZrmI | AGTACT | 2 cut(s) | 445, 535 |