Homeodomain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 278 |
| AccB1I | GGYRCC | 1 cut(s) | 207 |
| AccIII | TCCGGA | 1 cut(s) | 674 |
| AciI | CCGC | 2 cut(s) | 624, 681 |
| AclWI | GGATC | 6 cut(s) | 351, 364, 372, 385, 399, 460 |
| AcsI | RAATTY | 2 cut(s) | 333, 371 |
| AcuI | CTGAAG | 1 cut(s) | 414 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 141, 545 |
| AgeI | ACCGGT | 1 cut(s) | 141 |
| AgsI | TTSAA | 3 cut(s) | 35, 164, 230 |
| AjnI | CCWGG | 1 cut(s) | 510 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 543, 575 |
| AluBI | AGCT | 3 cut(s) | 31, 308, 658 |
| AluI | AGCT | 3 cut(s) | 31, 308, 658 |
| Alw21I | GWGCWC | 2 cut(s) | 546, 660 |
| AlwI | GGATC | 6 cut(s) | 351, 364, 372, 385, 399, 460 |
| Ama87I | CYCGRG | 1 cut(s) | 309 |
| Aor13HI | TCCGGA | 1 cut(s) | 674 |
| AoxI | GGCC | 1 cut(s) | 132 |
| ApeKI | GCWGC | 1 cut(s) | 98 |
| ApoI | RAATTY | 2 cut(s) | 333, 371 |
| AsiGI | ACCGGT | 1 cut(s) | 141 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 281, 525 |
| AspLEI | GCGC | 1 cut(s) | 596 |
| AsuC2I | CCSGG | 1 cut(s) | 103 |
| AsuHPI | GGTGA | 3 cut(s) | 455, 500, 560 |
| AvaI | CYCGRG | 1 cut(s) | 309 |
| BaeGI | GKGCMC | 1 cut(s) | 212 |
| BamHI | GGATCC | 2 cut(s) | 356, 377 |
| BanI | GGYRCC | 1 cut(s) | 207 |
| BanII | GRGCYC | 2 cut(s) | 151, 660 |
| BbsI | GAAGAC | 1 cut(s) | 274 |
| Bbv12I | GWGCWC | 2 cut(s) | 546, 660 |
| BbvI | GCAGC | 1 cut(s) | 110 |
| BccI | CCATC | 3 cut(s) | 416, 443, 679 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 391, 425 |
| BciT130I | CCWGG | 1 cut(s) | 512 |
| BcnI | CCSGG | 1 cut(s) | 103 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 127 |
| BglII | AGATCT | 1 cut(s) | 234 |
| BisI | GCNGC | 2 cut(s) | 99, 681 |
| BlpI | GCTNAGC | 1 cut(s) | 659 |
| BlsI | GCNGC | 2 cut(s) | 100, 682 |
| Bme1390I | CCNGG | 2 cut(s) | 103, 512 |
| BmeT110I | CYCGRG | 1 cut(s) | 309 |
| BmiI | GGNNCC | 8 cut(s) | 6, 150, 209, 293, 358, 379, 427, 679 |
| BmrFI | CCNGG | 2 cut(s) | 103, 512 |
| BmsI | GCATC | 1 cut(s) | 309 |
| BpiI | GAAGAC | 1 cut(s) | 274 |
| BpmI | CTGGAG | 1 cut(s) | 201 |
| Bpu10I | CCTNAGC | 1 cut(s) | 540 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 659 |
| BpuEI | CTTGAG | 2 cut(s) | 161, 674 |
| BpuMI | CCSGG | 1 cut(s) | 103 |
| Bsa29I | ATCGAT | 3 cut(s) | 411, 455, 459 |
| BsaJI | CCNNGG | 3 cut(s) | 75, 469, 559 |
| BsaWI | WCCGGW | 3 cut(s) | 141, 611, 674 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 191, 221 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 141, 545 |
| Bse118I | RCCGGY | 1 cut(s) | 141 |
| Bse1I | ACTGG | 2 cut(s) | 158, 445 |
| BseAI | TCCGGA | 1 cut(s) | 674 |
| BseBI | CCWGG | 1 cut(s) | 512 |
| BseCI | ATCGAT | 3 cut(s) | 411, 455, 459 |
| BseDI | CCNNGG | 3 cut(s) | 75, 469, 559 |
| BseGI | GGATG | 3 cut(s) | 324, 555, 671 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 141, 545 |
| BseMII | CTCAG | 2 cut(s) | 531, 673 |
| BseNI | ACTGG | 2 cut(s) | 158, 445 |
| BseRI | GAGGAG | 3 cut(s) | 92, 513, 516 |
| BseSI | GKGCMC | 1 cut(s) | 212 |
| BseXI | GCAGC | 1 cut(s) | 110 |
| BseYI | CCCAGC | 1 cut(s) | 39 |
| Bsh1285I | CGRYCG | 1 cut(s) | 459 |
| BshFI | GGCC | 1 cut(s) | 134 |
| BshNI | GGYRCC | 1 cut(s) | 207 |
| BshTI | ACCGGT | 1 cut(s) | 141 |
| BshVI | ATCGAT | 3 cut(s) | 411, 455, 459 |
| BsiEI | CGRYCG | 1 cut(s) | 459 |
| BsiHKAI | GWGCWC | 2 cut(s) | 546, 660 |
| BsiHKCI | CYCGRG | 1 cut(s) | 309 |
| BsiSI | CCGG | 4 cut(s) | 102, 142, 612, 675 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 141, 545 |
| BsnI | GGCC | 1 cut(s) | 134 |
| BsoBI | CYCGRG | 1 cut(s) | 309 |
| Bsp1286I | GDGCHC | 4 cut(s) | 151, 212, 546, 660 |
| Bsp13I | TCCGGA | 1 cut(s) | 674 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 659 |
| BspACI | CCGC | 2 cut(s) | 624, 681 |
| BspANI | GGCC | 1 cut(s) | 134 |
| BspCNI | CTCAG | 2 cut(s) | 532, 672 |
| BspDI | ATCGAT | 3 cut(s) | 411, 455, 459 |
| BspEI | TCCGGA | 1 cut(s) | 674 |
| BspLI | GGNNCC | 8 cut(s) | 6, 150, 209, 293, 358, 379, 427, 679 |
| BspPI | GGATC | 6 cut(s) | 351, 364, 372, 385, 399, 460 |
| BspT107I | GGYRCC | 1 cut(s) | 207 |
| BsrFI | RCCGGY | 1 cut(s) | 141 |
| BsrI | ACTGG | 2 cut(s) | 158, 445 |
| BssAI | RCCGGY | 1 cut(s) | 141 |
| BssECI | CCNNGG | 3 cut(s) | 75, 469, 559 |
| BssT1I | CCWWGG | 2 cut(s) | 469, 559 |
| Bst2UI | CCWGG | 1 cut(s) | 512 |
| Bst4CI | ACNGT | 3 cut(s) | 255, 548, 635 |
| Bst6I | CTCTTC | 1 cut(s) | 531 |
| BstC8I | GCNNGC | 1 cut(s) | 132 |
| BstDEI | CTNAG | 3 cut(s) | 167, 540, 659 |
| BstF5I | GGATG | 3 cut(s) | 324, 555, 671 |
| BstHHI | GCGC | 1 cut(s) | 596 |
| BstMCI | CGRYCG | 1 cut(s) | 459 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 127 |
| BstNI | CCWGG | 1 cut(s) | 512 |
| BstSCI | CCNGG | 2 cut(s) | 101, 510 |
| BstSLI | GKGCMC | 1 cut(s) | 212 |
| BstV1I | GCAGC | 1 cut(s) | 110 |
| BstV2I | GAAGAC | 1 cut(s) | 274 |
| BstX2I | RGATCY | 4 cut(s) | 234, 356, 377, 404 |
| BstYI | RGATCY | 4 cut(s) | 234, 356, 377, 404 |
| Bsu15I | ATCGAT | 3 cut(s) | 411, 455, 459 |
| BsuRI | GGCC | 1 cut(s) | 134 |
| BsuTUI | ATCGAT | 3 cut(s) | 411, 455, 459 |
| BtsCI | GGATG | 3 cut(s) | 324, 555, 671 |
| BtsIMutI | CAGTG | 2 cut(s) | 438, 640 |
| Cac8I | GCNNGC | 1 cut(s) | 132 |
| CfoI | GCGC | 1 cut(s) | 596 |
| Cfr10I | RCCGGY | 1 cut(s) | 141 |
| ClaI | ATCGAT | 3 cut(s) | 411, 455, 459 |
| CspAI | ACCGGT | 1 cut(s) | 141 |
| CviAII | CATG | 1 cut(s) | 487 |
| DdeI | CTNAG | 3 cut(s) | 167, 540, 659 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 278 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 278 |
| Eam1104I | CTCTTC | 1 cut(s) | 531 |
| EarI | CTCTTC | 1 cut(s) | 531 |
| Ecl136II | GAGCTC | 1 cut(s) | 658 |
| Eco130I | CCWWGG | 2 cut(s) | 469, 559 |
| Eco24I | GRGCYC | 2 cut(s) | 151, 660 |
| Eco53kI | GAGCTC | 1 cut(s) | 658 |
| Eco57I | CTGAAG | 1 cut(s) | 414 |
| Eco88I | CYCGRG | 1 cut(s) | 309 |
| EcoICRI | GAGCTC | 1 cut(s) | 658 |
| EcoRII | CCWGG | 1 cut(s) | 510 |
| EcoT14I | CCWWGG | 2 cut(s) | 469, 559 |
| EcoT38I | GRGCYC | 2 cut(s) | 151, 660 |
| ErhI | CCWWGG | 2 cut(s) | 469, 559 |
| FaeI | CATG | 1 cut(s) | 490 |
| FaiI | YATR | 2 cut(s) | 192, 488 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 266, 298 |
| FatI | CATG | 1 cut(s) | 486 |
| Fnu4HI | GCNGC | 2 cut(s) | 99, 681 |
| FokI | GGATG | 3 cut(s) | 331, 542, 658 |
| FriOI | GRGCYC | 2 cut(s) | 151, 660 |
| Fsp4HI | GCNGC | 2 cut(s) | 99, 681 |
| GlaI | GCGC | 1 cut(s) | 595 |
| GluI | GCNGC | 2 cut(s) | 99, 681 |
| GsaI | CCCAGC | 1 cut(s) | 43 |
| GsuI | CTGGAG | 1 cut(s) | 201 |
| HaeIII | GGCC | 1 cut(s) | 134 |
| HapII | CCGG | 4 cut(s) | 102, 142, 612, 675 |
| HhaI | GCGC | 1 cut(s) | 596 |
| Hin1II | CATG | 1 cut(s) | 490 |
| Hin6I | GCGC | 1 cut(s) | 594 |
| HinP1I | GCGC | 1 cut(s) | 594 |
| HinfI | GANTC | 2 cut(s) | 171, 226 |
| HpaII | CCGG | 4 cut(s) | 102, 142, 612, 675 |
| HphI | GGTGA | 3 cut(s) | 455, 500, 560 |
| Hpy188I | TCNGA | 4 cut(s) | 249, 339, 570, 583 |
| Hpy188III | TCNNGA | 6 cut(s) | 218, 230, 295, 311, 653, 675 |
| Hpy99I | CGWCG | 1 cut(s) | 498 |
| HpyAV | CCTTC | 4 cut(s) | 251, 389, 565, 581 |
| HpyCH4III | ACNGT | 3 cut(s) | 255, 548, 635 |
| HpyCH4IV | ACGT | 1 cut(s) | 279 |
| HpyCH4V | TGCA | 2 cut(s) | 19, 322 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 127 |
| HpyF3I | CTNAG | 3 cut(s) | 167, 540, 659 |
| HpySE526I | ACGT | 1 cut(s) | 279 |
| Hsp92II | CATG | 1 cut(s) | 490 |
| HspAI | GCGC | 1 cut(s) | 594 |
| Kpn2I | TCCGGA | 1 cut(s) | 674 |
| LmnI | GCTCC | 3 cut(s) | 28, 154, 677 |
| Lsp1109I | GCAGC | 1 cut(s) | 110 |
| LweI | GCATC | 1 cut(s) | 309 |
| MaeII | ACGT | 1 cut(s) | 279 |
| MaeIII | GTNAC | 3 cut(s) | 474, 602, 626 |
| MboII | GAAGA | 2 cut(s) | 274, 518 |
| MflI | RGATCY | 4 cut(s) | 234, 356, 377, 404 |
| MhlI | GDGCHC | 4 cut(s) | 151, 212, 546, 660 |
| MluCI | AATT | 2 cut(s) | 333, 371 |
| MroI | TCCGGA | 1 cut(s) | 674 |
| MroXI | GAANNNNTTC | 2 cut(s) | 281, 525 |
| MspA1I | CMGCKG | 1 cut(s) | 683 |
| MspI | CCGG | 4 cut(s) | 102, 142, 612, 675 |
| MspR9I | CCNGG | 2 cut(s) | 103, 512 |
| MvaI | CCWGG | 1 cut(s) | 512 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 127 |
| NciI | CCSGG | 1 cut(s) | 103 |
| NlaIII | CATG | 1 cut(s) | 490 |
| NlaIV | GGNNCC | 8 cut(s) | 6, 150, 209, 293, 358, 379, 427, 679 |
| PdmI | GAANNNNTTC | 2 cut(s) | 281, 525 |
| PfeI | GAWTC | 2 cut(s) | 171, 226 |
| PinAI | ACCGGT | 1 cut(s) | 141 |
| PkrI | GCNGC | 2 cut(s) | 100, 682 |
| Ple19I | CGATCG | 1 cut(s) | 459 |
| Psp124BI | GAGCTC | 1 cut(s) | 660 |
| Psp6I | CCWGG | 1 cut(s) | 510 |
| PspFI | CCCAGC | 1 cut(s) | 39 |
| PspGI | CCWGG | 1 cut(s) | 510 |
| PspN4I | GGNNCC | 8 cut(s) | 6, 150, 209, 293, 358, 379, 427, 679 |
| PsuI | RGATCY | 4 cut(s) | 234, 356, 377, 404 |
| PvuI | CGATCG | 1 cut(s) | 459 |
| SacI | GAGCTC | 1 cut(s) | 660 |
| SatI | GCNGC | 2 cut(s) | 99, 681 |
| ScrFI | CCNGG | 2 cut(s) | 103, 512 |
| SduI | GDGCHC | 4 cut(s) | 151, 212, 546, 660 |
| SfaNI | GCATC | 1 cut(s) | 309 |
| SmlI | CTYRAG | 2 cut(s) | 176, 653 |
| SmoI | CTYRAG | 2 cut(s) | 176, 653 |
| Sse9I | AATT | 2 cut(s) | 333, 371 |
| SsiI | CCGC | 2 cut(s) | 624, 681 |
| SstI | GAGCTC | 1 cut(s) | 660 |
| StyD4I | CCNGG | 2 cut(s) | 101, 510 |
| StyI | CCWWGG | 2 cut(s) | 469, 559 |
| TaaI | ACNGT | 3 cut(s) | 255, 548, 635 |
| TaiI | ACGT | 1 cut(s) | 282 |
| TaqI | TCGA | 5 cut(s) | 363, 411, 455, 459, 519 |
| TasI | AATT | 2 cut(s) | 333, 371 |
| TauI | GCSGC | 1 cut(s) | 683 |
| TfiI | GAWTC | 2 cut(s) | 171, 226 |
| TscAI | CASTG | 2 cut(s) | 445, 640 |
| TseI | GCWGC | 1 cut(s) | 98 |
| TspDTI | ATGAA | 1 cut(s) | 233 |
| TspRI | CASTG | 2 cut(s) | 445, 640 |
| XapI | RAATTY | 2 cut(s) | 333, 371 |
| XmnI | GAANNNNTTC | 2 cut(s) | 281, 525 |