Rmu_sc0016265.1_g000001

Homeodomain

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0016265.1
Physical Location & Seq
Forward (+)
1652 .. 2341
690 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0016265.1_g000001.1.cds

Sequence Viewer

Length: 690 bp
atggaaccacgaactctgcaactaatggagcttcaaacccagcaacaaatggaacaacaagcccagaaacccaccgaggagggaggaagcaaccaagcagccgggagtagtgccaacacgcctatcaggcaggccaataaccggtgggctcccacaccagttcaactaagaatcctcaaggggctttactatgacaaggagtttaggtgcccaactccagagcagattcaagagatctgccttcatctgaaacagtttgggcagattgaggacaagaacgtcttcttttggttccagaacctcaaagctcgggagaggatgcagttgagggaaattcggaatgttcgggttggtggatccctcgatctcaaatttggatccacaggttctactgaaggtggcagatccatcgatctcaacttcggttccacagatttcactggtgatgatggatcgatcgatctaacccttgggttacgatcactcatggaacgacgaggaggagatcaccaggaggtcgaaactcttcctctgttccctgagcacggtgaaaacatccttggtaatccgaaggctacatcagaggaaggtagcgcatttggttactattccggtggttcaggcggttacaacagtggttctcctgtttctcttgagctcagcctcaacccatccggagccgctgattag

Protein Analysis

229

Amino Acids

25.24

Weight (kDa)

5.03

Isoelectric Point (pI)

51.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000180)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr0c19g0499991 RchiOBHm_Chr0c19g0500021 RchiOBHm_Chr0c19g0500131 RchiOBHm_Chr0c31g0501321 RchiOBHm_Chr0c31g0501441 RchiOBHm_Chr1g0365611 RchiOBHm_Chr1g0366061 RchiOBHm_Chr1g0367951 RchiOBHm_Chr1g0369471 RchiOBHm_Chr1g0377271 RchiOBHm_Chr1g0379021 RchiOBHm_Chr1g0379461 RchiOBHm_Chr1g0381431 RchiOBHm_Chr1g0383551 RchiOBHm_Chr1g0383621 RchiOBHm_Chr2g0120951 RchiOBHm_Chr2g0121321 RchiOBHm_Chr2g0121381 RchiOBHm_Chr2g0121801 RchiOBHm_Chr2g0121861 RchiOBHm_Chr2g0122211 RchiOBHm_Chr2g0122471 RchiOBHm_Chr2g0122511 RchiOBHm_Chr2g0122751 RchiOBHm_Chr2g0123361 RchiOBHm_Chr2g0124071 RchiOBHm_Chr2g0124341 RchiOBHm_Chr2g0124361 RchiOBHm_Chr2g0124511 RchiOBHm_Chr2g0124641 RchiOBHm_Chr2g0125051 RchiOBHm_Chr2g0125111 RchiOBHm_Chr2g0125641 RchiOBHm_Chr2g0125871 RchiOBHm_Chr2g0125901 RchiOBHm_Chr2g0126011 RchiOBHm_Chr2g0126291 RchiOBHm_Chr2g0126341 RchiOBHm_Chr2g0126611 RchiOBHm_Chr2g0126671 RchiOBHm_Chr2g0126701 RchiOBHm_Chr2g0127021 RchiOBHm_Chr2g0127071 RchiOBHm_Chr2g0127361 RchiOBHm_Chr2g0127691 RchiOBHm_Chr2g0128041 RchiOBHm_Chr2g0128051 RchiOBHm_Chr2g0128061 RchiOBHm_Chr2g0128141 RchiOBHm_Chr2g0128171 RchiOBHm_Chr2g0128181 RchiOBHm_Chr2g0128551 RchiOBHm_Chr2g0128991 RchiOBHm_Chr2g0130061 RchiOBHm_Chr2g0130391 RchiOBHm_Chr2g0130631 RchiOBHm_Chr2g0130921 RchiOBHm_Chr2g0132731 RchiOBHm_Chr2g0133461 RchiOBHm_Chr2g0133921 RchiOBHm_Chr2g0134031 RchiOBHm_Chr2g0134281 RchiOBHm_Chr2g0134351 RchiOBHm_Chr2g0135501 RchiOBHm_Chr2g0135821 RchiOBHm_Chr2g0135931 RchiOBHm_Chr2g0137501 RchiOBHm_Chr2g0139141 RchiOBHm_Chr2g0139511 RchiOBHm_Chr2g0142411 RchiOBHm_Chr2g0143261 RchiOBHm_Chr2g0144171 RchiOBHm_Chr2g0144741 RchiOBHm_Chr2g0144841 RchiOBHm_Chr2g0145021 RchiOBHm_Chr2g0145831 RchiOBHm_Chr2g0145881 RchiOBHm_Chr2g0146081 RchiOBHm_Chr2g0146141 RchiOBHm_Chr2g0146671 RchiOBHm_Chr2g0149001 RchiOBHm_Chr2g0151811 RchiOBHm_Chr2g0151821 RchiOBHm_Chr2g0151831 RchiOBHm_Chr2g0152051 RchiOBHm_Chr2g0154791 RchiOBHm_Chr2g0155541 RchiOBHm_Chr2g0160791 RchiOBHm_Chr2g0161631 RchiOBHm_Chr2g0162151 RchiOBHm_Chr2g0162751 RchiOBHm_Chr2g0166561 RchiOBHm_Chr2g0166751 RchiOBHm_Chr2g0168891 RchiOBHm_Chr2g0170211 RchiOBHm_Chr2g0170781 RchiOBHm_Chr2g0172831 RchiOBHm_Chr2g0174791 RchiOBHm_Chr3g0448081 RchiOBHm_Chr3g0449761 RchiOBHm_Chr3g0453291 RchiOBHm_Chr3g0456271 RchiOBHm_Chr3g0456461 RchiOBHm_Chr3g0458351 RchiOBHm_Chr3g0461411 RchiOBHm_Chr3g0461511 RchiOBHm_Chr3g0463871 RchiOBHm_Chr3g0467841 RchiOBHm_Chr3g0470081 RchiOBHm_Chr3g0470571 RchiOBHm_Chr7g0187061 RchiOBHm_Chr7g0187461 RchiOBHm_Chr7g0187681 RchiOBHm_Chr7g0189901 RchiOBHm_Chr7g0190271 RchiOBHm_Chr7g0193451 RchiOBHm_Chr7g0194081 RchiOBHm_Chr7g0195771 RchiOBHm_Chr7g0196301 RchiOBHm_Chr7g0196911
rosa_multiflora Rmu_sc0000236.1_g000047 Rmu_sc0000284.1_g000007 Rmu_sc0000288.1_g000006 Rmu_sc0000507.1_g000017 Rmu_sc0000580.1_g000015 Rmu_sc0000663.1_g000011 Rmu_sc0000675.1_g000024 Rmu_sc0000693.1_g000072 Rmu_sc0000779.1_g000005 Rmu_sc0000851.1_g000015 Rmu_sc0000962.1_g000001 Rmu_sc0001493.1_g000055 Rmu_sc0001669.1_g000025 Rmu_sc0001891.1_g000051 Rmu_sc0001926.1_g000007 Rmu_sc0002082.1_g000025 Rmu_sc0002141.1_g000001 Rmu_sc0002141.1_g000004 Rmu_sc0002414.1_g000012 Rmu_sc0002557.1_g000022 Rmu_sc0002709.1_g000038 Rmu_sc0002897.1_g000004 Rmu_sc0002934.1_g000055 Rmu_sc0003692.1_g000017 Rmu_sc0004283.1_g000068 Rmu_sc0004598.1_g000010 Rmu_sc0004614.1_g000004 Rmu_sc0004805.1_g000006 Rmu_sc0005142.1_g000041 Rmu_sc0005777.1_g000001 Rmu_sc0006420.1_g000019 Rmu_sc0006803.1_g000016 Rmu_sc0007034.1_g000015 Rmu_sc0008079.1_g000017 Rmu_sc0008148.1_g000040 Rmu_sc0008608.1_g000007 Rmu_sc0008675.1_g000001 Rmu_sc0009663.1_g000001 Rmu_sc0010188.1_g000003 Rmu_sc0010739.1_g000005 Rmu_sc0016265.1_g000001 Rmu_sc0031757.1_g000001 Rmu_ssc0000087.1_g000024 Rmu_ssc0000438.1_g000029
rosa_roxburghii Rroxscaffold_1G00003350
rosa_rugosa Rorug03G0248400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 278
AccB1I GGYRCC 1 cut(s) 207
AccIII TCCGGA 1 cut(s) 674
AciI CCGC 2 cut(s) 624, 681
AclWI GGATC 6 cut(s) 351, 364, 372, 385, 399, 460
AcsI RAATTY 2 cut(s) 333, 371
AcuI CTGAAG 1 cut(s) 414
AfiI CCNNNNNNNGG 2 cut(s) 141, 545
AgeI ACCGGT 1 cut(s) 141
AgsI TTSAA 3 cut(s) 35, 164, 230
AjnI CCWGG 1 cut(s) 510
AjuI GAANNNNNNNTTGG 2 cut(s) 543, 575
AluBI AGCT 3 cut(s) 31, 308, 658
AluI AGCT 3 cut(s) 31, 308, 658
Alw21I GWGCWC 2 cut(s) 546, 660
AlwI GGATC 6 cut(s) 351, 364, 372, 385, 399, 460
Ama87I CYCGRG 1 cut(s) 309
Aor13HI TCCGGA 1 cut(s) 674
AoxI GGCC 1 cut(s) 132
ApeKI GCWGC 1 cut(s) 98
ApoI RAATTY 2 cut(s) 333, 371
AsiGI ACCGGT 1 cut(s) 141
Asp700I GAANNNNTTC 2 cut(s) 281, 525
AspLEI GCGC 1 cut(s) 596
AsuC2I CCSGG 1 cut(s) 103
AsuHPI GGTGA 3 cut(s) 455, 500, 560
AvaI CYCGRG 1 cut(s) 309
BaeGI GKGCMC 1 cut(s) 212
BamHI GGATCC 2 cut(s) 356, 377
BanI GGYRCC 1 cut(s) 207
BanII GRGCYC 2 cut(s) 151, 660
BbsI GAAGAC 1 cut(s) 274
Bbv12I GWGCWC 2 cut(s) 546, 660
BbvI GCAGC 1 cut(s) 110
BccI CCATC 3 cut(s) 416, 443, 679
BcgI CGANNNNNNTGC 2 cut(s) 391, 425
BciT130I CCWGG 1 cut(s) 512
BcnI CCSGG 1 cut(s) 103
BglI GCCNNNNNGGC 1 cut(s) 127
BglII AGATCT 1 cut(s) 234
BisI GCNGC 2 cut(s) 99, 681
BlpI GCTNAGC 1 cut(s) 659
BlsI GCNGC 2 cut(s) 100, 682
Bme1390I CCNGG 2 cut(s) 103, 512
BmeT110I CYCGRG 1 cut(s) 309
BmiI GGNNCC 8 cut(s) 6, 150, 209, 293, 358, 379, 427, 679
BmrFI CCNGG 2 cut(s) 103, 512
BmsI GCATC 1 cut(s) 309
BpiI GAAGAC 1 cut(s) 274
BpmI CTGGAG 1 cut(s) 201
Bpu10I CCTNAGC 1 cut(s) 540
Bpu1102I GCTNAGC 1 cut(s) 659
BpuEI CTTGAG 2 cut(s) 161, 674
BpuMI CCSGG 1 cut(s) 103
Bsa29I ATCGAT 3 cut(s) 411, 455, 459
BsaJI CCNNGG 3 cut(s) 75, 469, 559
BsaWI WCCGGW 3 cut(s) 141, 611, 674
BsaXI ACNNNNNCTCC 2 cut(s) 191, 221
Bsc4I CCNNNNNNNGG 2 cut(s) 141, 545
Bse118I RCCGGY 1 cut(s) 141
Bse1I ACTGG 2 cut(s) 158, 445
BseAI TCCGGA 1 cut(s) 674
BseBI CCWGG 1 cut(s) 512
BseCI ATCGAT 3 cut(s) 411, 455, 459
BseDI CCNNGG 3 cut(s) 75, 469, 559
BseGI GGATG 3 cut(s) 324, 555, 671
BseLI CCNNNNNNNGG 2 cut(s) 141, 545
BseMII CTCAG 2 cut(s) 531, 673
BseNI ACTGG 2 cut(s) 158, 445
BseRI GAGGAG 3 cut(s) 92, 513, 516
BseSI GKGCMC 1 cut(s) 212
BseXI GCAGC 1 cut(s) 110
BseYI CCCAGC 1 cut(s) 39
Bsh1285I CGRYCG 1 cut(s) 459
BshFI GGCC 1 cut(s) 134
BshNI GGYRCC 1 cut(s) 207
BshTI ACCGGT 1 cut(s) 141
BshVI ATCGAT 3 cut(s) 411, 455, 459
BsiEI CGRYCG 1 cut(s) 459
BsiHKAI GWGCWC 2 cut(s) 546, 660
BsiHKCI CYCGRG 1 cut(s) 309
BsiSI CCGG 4 cut(s) 102, 142, 612, 675
BslI CCNNNNNNNGG 2 cut(s) 141, 545
BsnI GGCC 1 cut(s) 134
BsoBI CYCGRG 1 cut(s) 309
Bsp1286I GDGCHC 4 cut(s) 151, 212, 546, 660
Bsp13I TCCGGA 1 cut(s) 674
Bsp1720I GCTNAGC 1 cut(s) 659
BspACI CCGC 2 cut(s) 624, 681
BspANI GGCC 1 cut(s) 134
BspCNI CTCAG 2 cut(s) 532, 672
BspDI ATCGAT 3 cut(s) 411, 455, 459
BspEI TCCGGA 1 cut(s) 674
BspLI GGNNCC 8 cut(s) 6, 150, 209, 293, 358, 379, 427, 679
BspPI GGATC 6 cut(s) 351, 364, 372, 385, 399, 460
BspT107I GGYRCC 1 cut(s) 207
BsrFI RCCGGY 1 cut(s) 141
BsrI ACTGG 2 cut(s) 158, 445
BssAI RCCGGY 1 cut(s) 141
BssECI CCNNGG 3 cut(s) 75, 469, 559
BssT1I CCWWGG 2 cut(s) 469, 559
Bst2UI CCWGG 1 cut(s) 512
Bst4CI ACNGT 3 cut(s) 255, 548, 635
Bst6I CTCTTC 1 cut(s) 531
BstC8I GCNNGC 1 cut(s) 132
BstDEI CTNAG 3 cut(s) 167, 540, 659
BstF5I GGATG 3 cut(s) 324, 555, 671
BstHHI GCGC 1 cut(s) 596
BstMCI CGRYCG 1 cut(s) 459
BstMWI GCNNNNNNNGC 1 cut(s) 127
BstNI CCWGG 1 cut(s) 512
BstSCI CCNGG 2 cut(s) 101, 510
BstSLI GKGCMC 1 cut(s) 212
BstV1I GCAGC 1 cut(s) 110
BstV2I GAAGAC 1 cut(s) 274
BstX2I RGATCY 4 cut(s) 234, 356, 377, 404
BstYI RGATCY 4 cut(s) 234, 356, 377, 404
Bsu15I ATCGAT 3 cut(s) 411, 455, 459
BsuRI GGCC 1 cut(s) 134
BsuTUI ATCGAT 3 cut(s) 411, 455, 459
BtsCI GGATG 3 cut(s) 324, 555, 671
BtsIMutI CAGTG 2 cut(s) 438, 640
Cac8I GCNNGC 1 cut(s) 132
CfoI GCGC 1 cut(s) 596
Cfr10I RCCGGY 1 cut(s) 141
ClaI ATCGAT 3 cut(s) 411, 455, 459
CspAI ACCGGT 1 cut(s) 141
CviAII CATG 1 cut(s) 487
DdeI CTNAG 3 cut(s) 167, 540, 659
DrdI GACNNNNNNGTC 1 cut(s) 278
DseDI GACNNNNNNGTC 1 cut(s) 278
Eam1104I CTCTTC 1 cut(s) 531
EarI CTCTTC 1 cut(s) 531
Ecl136II GAGCTC 1 cut(s) 658
Eco130I CCWWGG 2 cut(s) 469, 559
Eco24I GRGCYC 2 cut(s) 151, 660
Eco53kI GAGCTC 1 cut(s) 658
Eco57I CTGAAG 1 cut(s) 414
Eco88I CYCGRG 1 cut(s) 309
EcoICRI GAGCTC 1 cut(s) 658
EcoRII CCWGG 1 cut(s) 510
EcoT14I CCWWGG 2 cut(s) 469, 559
EcoT38I GRGCYC 2 cut(s) 151, 660
ErhI CCWWGG 2 cut(s) 469, 559
FaeI CATG 1 cut(s) 490
FaiI YATR 2 cut(s) 192, 488
FalI AAGNNNNNCTT 2 cut(s) 266, 298
FatI CATG 1 cut(s) 486
Fnu4HI GCNGC 2 cut(s) 99, 681
FokI GGATG 3 cut(s) 331, 542, 658
FriOI GRGCYC 2 cut(s) 151, 660
Fsp4HI GCNGC 2 cut(s) 99, 681
GlaI GCGC 1 cut(s) 595
GluI GCNGC 2 cut(s) 99, 681
GsaI CCCAGC 1 cut(s) 43
GsuI CTGGAG 1 cut(s) 201
HaeIII GGCC 1 cut(s) 134
HapII CCGG 4 cut(s) 102, 142, 612, 675
HhaI GCGC 1 cut(s) 596
Hin1II CATG 1 cut(s) 490
Hin6I GCGC 1 cut(s) 594
HinP1I GCGC 1 cut(s) 594
HinfI GANTC 2 cut(s) 171, 226
HpaII CCGG 4 cut(s) 102, 142, 612, 675
HphI GGTGA 3 cut(s) 455, 500, 560
Hpy188I TCNGA 4 cut(s) 249, 339, 570, 583
Hpy188III TCNNGA 6 cut(s) 218, 230, 295, 311, 653, 675
Hpy99I CGWCG 1 cut(s) 498
HpyAV CCTTC 4 cut(s) 251, 389, 565, 581
HpyCH4III ACNGT 3 cut(s) 255, 548, 635
HpyCH4IV ACGT 1 cut(s) 279
HpyCH4V TGCA 2 cut(s) 19, 322
HpyF10VI GCNNNNNNNGC 1 cut(s) 127
HpyF3I CTNAG 3 cut(s) 167, 540, 659
HpySE526I ACGT 1 cut(s) 279
Hsp92II CATG 1 cut(s) 490
HspAI GCGC 1 cut(s) 594
Kpn2I TCCGGA 1 cut(s) 674
LmnI GCTCC 3 cut(s) 28, 154, 677
Lsp1109I GCAGC 1 cut(s) 110
LweI GCATC 1 cut(s) 309
MaeII ACGT 1 cut(s) 279
MaeIII GTNAC 3 cut(s) 474, 602, 626
MboII GAAGA 2 cut(s) 274, 518
MflI RGATCY 4 cut(s) 234, 356, 377, 404
MhlI GDGCHC 4 cut(s) 151, 212, 546, 660
MluCI AATT 2 cut(s) 333, 371
MroI TCCGGA 1 cut(s) 674
MroXI GAANNNNTTC 2 cut(s) 281, 525
MspA1I CMGCKG 1 cut(s) 683
MspI CCGG 4 cut(s) 102, 142, 612, 675
MspR9I CCNGG 2 cut(s) 103, 512
MvaI CCWGG 1 cut(s) 512
MwoI GCNNNNNNNGC 1 cut(s) 127
NciI CCSGG 1 cut(s) 103
NlaIII CATG 1 cut(s) 490
NlaIV GGNNCC 8 cut(s) 6, 150, 209, 293, 358, 379, 427, 679
PdmI GAANNNNTTC 2 cut(s) 281, 525
PfeI GAWTC 2 cut(s) 171, 226
PinAI ACCGGT 1 cut(s) 141
PkrI GCNGC 2 cut(s) 100, 682
Ple19I CGATCG 1 cut(s) 459
Psp124BI GAGCTC 1 cut(s) 660
Psp6I CCWGG 1 cut(s) 510
PspFI CCCAGC 1 cut(s) 39
PspGI CCWGG 1 cut(s) 510
PspN4I GGNNCC 8 cut(s) 6, 150, 209, 293, 358, 379, 427, 679
PsuI RGATCY 4 cut(s) 234, 356, 377, 404
PvuI CGATCG 1 cut(s) 459
SacI GAGCTC 1 cut(s) 660
SatI GCNGC 2 cut(s) 99, 681
ScrFI CCNGG 2 cut(s) 103, 512
SduI GDGCHC 4 cut(s) 151, 212, 546, 660
SfaNI GCATC 1 cut(s) 309
SmlI CTYRAG 2 cut(s) 176, 653
SmoI CTYRAG 2 cut(s) 176, 653
Sse9I AATT 2 cut(s) 333, 371
SsiI CCGC 2 cut(s) 624, 681
SstI GAGCTC 1 cut(s) 660
StyD4I CCNGG 2 cut(s) 101, 510
StyI CCWWGG 2 cut(s) 469, 559
TaaI ACNGT 3 cut(s) 255, 548, 635
TaiI ACGT 1 cut(s) 282
TaqI TCGA 5 cut(s) 363, 411, 455, 459, 519
TasI AATT 2 cut(s) 333, 371
TauI GCSGC 1 cut(s) 683
TfiI GAWTC 2 cut(s) 171, 226
TscAI CASTG 2 cut(s) 445, 640
TseI GCWGC 1 cut(s) 98
TspDTI ATGAA 1 cut(s) 233
TspRI CASTG 2 cut(s) 445, 640
XapI RAATTY 2 cut(s) 333, 371
XmnI GAANNNNTTC 2 cut(s) 281, 525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.