Homeodomain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 278 |
| AatII | GACGTC | 1 cut(s) | 642 |
| AciI | CCGC | 1 cut(s) | 765 |
| AclI | AACGTT | 1 cut(s) | 342 |
| AclWI | GGATC | 4 cut(s) | 364, 372, 385, 460 |
| AcsI | RAATTY | 1 cut(s) | 332 |
| AcuI | CTGAAG | 1 cut(s) | 161 |
| AcyI | GRCGYC | 1 cut(s) | 639 |
| AfaI | GTAC | 2 cut(s) | 209, 535 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 141, 629 |
| AgeI | ACCGGT | 1 cut(s) | 141 |
| AgsI | TTSAA | 6 cut(s) | 20, 35, 230, 328, 438, 520 |
| AjnI | CCWGG | 1 cut(s) | 594 |
| AluBI | AGCT | 3 cut(s) | 31, 161, 742 |
| AluI | AGCT | 3 cut(s) | 31, 161, 742 |
| Alw21I | GWGCWC | 2 cut(s) | 630, 744 |
| Alw26I | GTCTC | 2 cut(s) | 599, 736 |
| Alw44I | GTGCAC | 1 cut(s) | 626 |
| AlwI | GGATC | 4 cut(s) | 364, 372, 385, 460 |
| Ama87I | CYCGRG | 1 cut(s) | 703 |
| AoxI | GGCC | 1 cut(s) | 128 |
| ApaLI | GTGCAC | 1 cut(s) | 626 |
| ApeKI | GCWGC | 1 cut(s) | 98 |
| ApoI | RAATTY | 1 cut(s) | 332 |
| AsiGI | ACCGGT | 1 cut(s) | 141 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 281 |
| AspS9I | GGNCC | 1 cut(s) | 405 |
| AsuC2I | CCSGG | 1 cut(s) | 103 |
| AsuHPI | GGTGA | 4 cut(s) | 455, 504, 584, 644 |
| AvaI | CYCGRG | 1 cut(s) | 703 |
| AvaII | GGWCC | 1 cut(s) | 405 |
| BaeGI | GKGCMC | 1 cut(s) | 630 |
| BamHI | GGATCC | 1 cut(s) | 377 |
| BanII | GRGCYC | 3 cut(s) | 151, 186, 744 |
| BauI | CACGAG | 1 cut(s) | 309 |
| BbsI | GAAGAC | 2 cut(s) | 233, 274 |
| Bbv12I | GWGCWC | 2 cut(s) | 630, 744 |
| BbvI | GCAGC | 1 cut(s) | 110 |
| BccI | CCATC | 2 cut(s) | 392, 443 |
| BciT130I | CCWGG | 1 cut(s) | 596 |
| BcnI | CCSGG | 1 cut(s) | 103 |
| BcoDI | GTCTC | 2 cut(s) | 599, 736 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 127 |
| BglII | AGATCT | 1 cut(s) | 234 |
| BisI | GCNGC | 2 cut(s) | 99, 765 |
| BlpI | GCTNAGC | 1 cut(s) | 743 |
| BlsI | GCNGC | 2 cut(s) | 100, 766 |
| BmcAI | AGTACT | 1 cut(s) | 535 |
| Bme1390I | CCNGG | 2 cut(s) | 103, 596 |
| Bme18I | GGWCC | 1 cut(s) | 405 |
| BmeT110I | CYCGRG | 1 cut(s) | 703 |
| BmgT120I | GGNCC | 1 cut(s) | 405 |
| BmiI | GGNNCC | 6 cut(s) | 6, 150, 293, 379, 427, 763 |
| BmrFI | CCNGG | 2 cut(s) | 103, 596 |
| BpiI | GAAGAC | 2 cut(s) | 233, 274 |
| BpmI | CTGGAG | 1 cut(s) | 201 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 743 |
| BpuEI | CTTGAG | 3 cut(s) | 287, 711, 758 |
| BpuMI | CCSGG | 1 cut(s) | 103 |
| BsaHI | GRCGYC | 1 cut(s) | 639 |
| BsaJI | CCNNGG | 4 cut(s) | 75, 469, 643, 666 |
| BsaWI | WCCGGW | 2 cut(s) | 141, 695 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 488, 518 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 141, 629 |
| Bse118I | RCCGGY | 1 cut(s) | 141 |
| Bse1I | ACTGG | 3 cut(s) | 436, 445, 531 |
| BseBI | CCWGG | 1 cut(s) | 596 |
| BseDI | CCNNGG | 4 cut(s) | 75, 469, 643, 666 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 141, 629 |
| BseMII | CTCAG | 1 cut(s) | 757 |
| BseNI | ACTGG | 3 cut(s) | 436, 445, 531 |
| BseRI | GAGGAG | 3 cut(s) | 92, 597, 600 |
| BseSI | GKGCMC | 1 cut(s) | 630 |
| BseXI | GCAGC | 1 cut(s) | 110 |
| BseYI | CCCAGC | 2 cut(s) | 39, 63 |
| BshFI | GGCC | 1 cut(s) | 130 |
| BshTI | ACCGGT | 1 cut(s) | 141 |
| BsiHKAI | GWGCWC | 2 cut(s) | 630, 744 |
| BsiHKCI | CYCGRG | 1 cut(s) | 703 |
| BsiSI | CCGG | 3 cut(s) | 102, 142, 696 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 141, 629 |
| BsmAI | GTCTC | 2 cut(s) | 599, 736 |
| BsnI | GGCC | 1 cut(s) | 130 |
| BsoBI | CYCGRG | 1 cut(s) | 703 |
| Bsp1286I | GDGCHC | 4 cut(s) | 151, 186, 630, 744 |
| Bsp143I | GATC | 9 cut(s) | 234, 264, 356, 364, 377, 412, 452, 460, 589 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 743 |
| BspACI | CCGC | 1 cut(s) | 765 |
| BspANI | GGCC | 1 cut(s) | 130 |
| BspCNI | CTCAG | 1 cut(s) | 756 |
| BspLI | GGNNCC | 6 cut(s) | 6, 150, 293, 379, 427, 763 |
| BspPI | GGATC | 4 cut(s) | 364, 372, 385, 460 |
| BsrFI | RCCGGY | 1 cut(s) | 141 |
| BsrI | ACTGG | 3 cut(s) | 436, 445, 531 |
| BssAI | RCCGGY | 1 cut(s) | 141 |
| BssECI | CCNNGG | 4 cut(s) | 75, 469, 643, 666 |
| BssMI | GATC | 9 cut(s) | 234, 264, 356, 364, 377, 412, 452, 460, 589 |
| BssNI | GRCGYC | 1 cut(s) | 639 |
| BssSI | CACGAG | 1 cut(s) | 309 |
| BssT1I | CCWWGG | 2 cut(s) | 469, 643 |
| Bst2BI | CACGAG | 1 cut(s) | 309 |
| Bst2UI | CCWGG | 1 cut(s) | 596 |
| Bst4CI | ACNGT | 4 cut(s) | 255, 632, 686, 719 |
| Bst6I | CTCTTC | 2 cut(s) | 21, 615 |
| BstACI | GRCGYC | 1 cut(s) | 639 |
| BstDEI | CTNAG | 3 cut(s) | 167, 743, 777 |
| BstEII | GGTNACC | 1 cut(s) | 647 |
| BstKTI | GATC | 9 cut(s) | 237, 267, 359, 367, 380, 415, 455, 463, 592 |
| BstMAI | GTCTC | 2 cut(s) | 599, 736 |
| BstMBI | GATC | 9 cut(s) | 234, 264, 356, 364, 377, 412, 452, 460, 589 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 127, 773 |
| BstNI | CCWGG | 1 cut(s) | 596 |
| BstPI | GGTNACC | 1 cut(s) | 647 |
| BstSCI | CCNGG | 2 cut(s) | 101, 594 |
| BstSLI | GKGCMC | 1 cut(s) | 630 |
| BstV1I | GCAGC | 1 cut(s) | 110 |
| BstV2I | GAAGAC | 2 cut(s) | 233, 274 |
| BstX2I | RGATCY | 3 cut(s) | 234, 356, 377 |
| BstYI | RGATCY | 3 cut(s) | 234, 356, 377 |
| BsuRI | GGCC | 1 cut(s) | 130 |
| BtsIMutI | CAGTG | 3 cut(s) | 390, 429, 724 |
| Cfr10I | RCCGGY | 1 cut(s) | 141 |
| Cfr13I | GGNCC | 1 cut(s) | 405 |
| Csp6I | GTAC | 2 cut(s) | 208, 534 |
| CspAI | ACCGGT | 1 cut(s) | 141 |
| CviAII | CATG | 2 cut(s) | 477, 571 |
| CviQI | GTAC | 2 cut(s) | 208, 534 |
| DdeI | CTNAG | 3 cut(s) | 167, 743, 777 |
| DpnI | GATC | 9 cut(s) | 236, 266, 358, 366, 379, 414, 454, 462, 591 |
| DpnII | GATC | 9 cut(s) | 234, 264, 356, 364, 377, 412, 452, 460, 589 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 278 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 278 |
| Eam1104I | CTCTTC | 2 cut(s) | 21, 615 |
| EarI | CTCTTC | 2 cut(s) | 21, 615 |
| Ecl136II | GAGCTC | 1 cut(s) | 742 |
| Eco130I | CCWWGG | 2 cut(s) | 469, 643 |
| Eco24I | GRGCYC | 3 cut(s) | 151, 186, 744 |
| Eco47I | GGWCC | 1 cut(s) | 405 |
| Eco53kI | GAGCTC | 1 cut(s) | 742 |
| Eco57I | CTGAAG | 1 cut(s) | 161 |
| Eco88I | CYCGRG | 1 cut(s) | 703 |
| Eco91I | GGTNACC | 1 cut(s) | 647 |
| EcoICRI | GAGCTC | 1 cut(s) | 742 |
| EcoO65I | GGTNACC | 1 cut(s) | 647 |
| EcoRII | CCWGG | 1 cut(s) | 594 |
| EcoT14I | CCWWGG | 2 cut(s) | 469, 643 |
| EcoT38I | GRGCYC | 3 cut(s) | 151, 186, 744 |
| ErhI | CCWWGG | 2 cut(s) | 469, 643 |
| FaeI | CATG | 2 cut(s) | 480, 574 |
| FaiI | YATR | 6 cut(s) | 192, 258, 478, 489, 572, 682 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 266, 298, 720, 752 |
| FatI | CATG | 2 cut(s) | 476, 570 |
| Fnu4HI | GCNGC | 2 cut(s) | 99, 765 |
| FriOI | GRGCYC | 3 cut(s) | 151, 186, 744 |
| Fsp4HI | GCNGC | 2 cut(s) | 99, 765 |
| GluI | GCNGC | 2 cut(s) | 99, 765 |
| GsaI | CCCAGC | 2 cut(s) | 43, 67 |
| GsuI | CTGGAG | 1 cut(s) | 201 |
| HaeIII | GGCC | 1 cut(s) | 130 |
| HapII | CCGG | 3 cut(s) | 102, 142, 696 |
| Hin1I | GRCGYC | 1 cut(s) | 639 |
| Hin1II | CATG | 2 cut(s) | 480, 574 |
| HincII | GTYRAC | 1 cut(s) | 496 |
| HindII | GTYRAC | 1 cut(s) | 496 |
| HinfI | GANTC | 3 cut(s) | 171, 226, 607 |
| HpaII | CCGG | 3 cut(s) | 102, 142, 696 |
| HphI | GGTGA | 4 cut(s) | 455, 504, 584, 644 |
| Hpy166II | GTNNAC | 2 cut(s) | 496, 628 |
| Hpy188I | TCNGA | 4 cut(s) | 249, 339, 667, 761 |
| Hpy188III | TCNNGA | 7 cut(s) | 218, 230, 295, 311, 362, 604, 737 |
| Hpy8I | GTNNAC | 2 cut(s) | 496, 628 |
| HpyAV | CCTTC | 5 cut(s) | 185, 322, 517, 526, 665 |
| HpyCH4III | ACNGT | 4 cut(s) | 255, 632, 686, 719 |
| HpyCH4IV | ACGT | 2 cut(s) | 342, 639 |
| HpyCH4V | TGCA | 2 cut(s) | 628, 680 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 127, 773 |
| HpyF3I | CTNAG | 3 cut(s) | 167, 743, 777 |
| HpySE526I | ACGT | 2 cut(s) | 342, 639 |
| Hsp92I | GRCGYC | 1 cut(s) | 639 |
| Hsp92II | CATG | 2 cut(s) | 480, 574 |
| Kzo9I | GATC | 9 cut(s) | 234, 264, 356, 364, 377, 412, 452, 460, 589 |
| LmnI | GCTCC | 3 cut(s) | 28, 154, 761 |
| Lsp1109I | GCAGC | 1 cut(s) | 110 |
| MaeII | ACGT | 2 cut(s) | 342, 639 |
| MaeIII | GTNAC | 4 cut(s) | 200, 647, 686, 710 |
| MalI | GATC | 9 cut(s) | 236, 266, 358, 366, 379, 414, 454, 462, 591 |
| MboI | GATC | 9 cut(s) | 234, 264, 356, 364, 377, 412, 452, 460, 589 |
| MboII | GAAGA | 4 cut(s) | 8, 233, 274, 602 |
| MfeI | CAATTG | 2 cut(s) | 47, 456 |
| MflI | RGATCY | 3 cut(s) | 234, 356, 377 |
| MhlI | GDGCHC | 4 cut(s) | 151, 186, 630, 744 |
| MluCI | AATT | 6 cut(s) | 47, 53, 323, 332, 370, 456 |
| MlyI | GAGTC | 1 cut(s) | 601 |
| MroXI | GAANNNNTTC | 1 cut(s) | 281 |
| MspA1I | CMGCKG | 1 cut(s) | 767 |
| MspI | CCGG | 3 cut(s) | 102, 142, 696 |
| MspR9I | CCNGG | 2 cut(s) | 103, 596 |
| MunI | CAATTG | 2 cut(s) | 47, 456 |
| MvaI | CCWGG | 1 cut(s) | 596 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 127, 773 |
| NciI | CCSGG | 1 cut(s) | 103 |
| NdeII | GATC | 9 cut(s) | 234, 264, 356, 364, 377, 412, 452, 460, 589 |
| NlaIII | CATG | 2 cut(s) | 480, 574 |
| NlaIV | GGNNCC | 6 cut(s) | 6, 150, 293, 379, 427, 763 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 489, 636 |
| PdmI | GAANNNNTTC | 1 cut(s) | 281 |
| PfeI | GAWTC | 2 cut(s) | 171, 226 |
| PinAI | ACCGGT | 1 cut(s) | 141 |
| PkrI | GCNGC | 2 cut(s) | 100, 766 |
| PleI | GAGTC | 1 cut(s) | 601 |
| PpsI | GAGTC | 1 cut(s) | 601 |
| Psp124BI | GAGCTC | 1 cut(s) | 744 |
| Psp1406I | AACGTT | 1 cut(s) | 342 |
| Psp6I | CCWGG | 1 cut(s) | 594 |
| PspEI | GGTNACC | 1 cut(s) | 647 |
| PspFI | CCCAGC | 2 cut(s) | 39, 63 |
| PspGI | CCWGG | 1 cut(s) | 594 |
| PspN4I | GGNNCC | 6 cut(s) | 6, 150, 293, 379, 427, 763 |
| PspPI | GGNCC | 1 cut(s) | 405 |
| PsuI | RGATCY | 3 cut(s) | 234, 356, 377 |
| RsaI | GTAC | 2 cut(s) | 209, 535 |
| RsaNI | GTAC | 2 cut(s) | 208, 534 |
| SacI | GAGCTC | 1 cut(s) | 744 |
| SatI | GCNGC | 2 cut(s) | 99, 765 |
| Sau3AI | GATC | 9 cut(s) | 234, 264, 356, 364, 377, 412, 452, 460, 589 |
| Sau96I | GGNCC | 1 cut(s) | 405 |
| ScaI | AGTACT | 1 cut(s) | 535 |
| SchI | GAGTC | 1 cut(s) | 601 |
| ScrFI | CCNGG | 2 cut(s) | 103, 596 |
| SduI | GDGCHC | 4 cut(s) | 151, 186, 630, 744 |
| SinI | GGWCC | 1 cut(s) | 405 |
| SmlI | CTYRAG | 3 cut(s) | 302, 726, 737 |
| SmoI | CTYRAG | 3 cut(s) | 302, 726, 737 |
| Sse9I | AATT | 6 cut(s) | 47, 53, 323, 332, 370, 456 |
| SsiI | CCGC | 1 cut(s) | 765 |
| SstI | GAGCTC | 1 cut(s) | 744 |
| StyD4I | CCNGG | 2 cut(s) | 101, 594 |
| StyI | CCWWGG | 2 cut(s) | 469, 643 |
| TaaI | ACNGT | 4 cut(s) | 255, 632, 686, 719 |
| TaiI | ACGT | 2 cut(s) | 345, 642 |
| TaqI | TCGA | 4 cut(s) | 267, 363, 580, 603 |
| TasI | AATT | 6 cut(s) | 47, 53, 323, 332, 370, 456 |
| TatI | WGTACW | 1 cut(s) | 533 |
| TauI | GCSGC | 1 cut(s) | 767 |
| TfiI | GAWTC | 2 cut(s) | 171, 226 |
| TscAI | CASTG | 3 cut(s) | 397, 436, 724 |
| TseI | GCWGC | 1 cut(s) | 98 |
| TspDTI | ATGAA | 2 cut(s) | 233, 559 |
| TspRI | CASTG | 3 cut(s) | 397, 436, 724 |
| VneI | GTGCAC | 1 cut(s) | 626 |
| VpaK11BI | GGWCC | 1 cut(s) | 405 |
| XapI | RAATTY | 1 cut(s) | 332 |
| XmnI | GAANNNNTTC | 1 cut(s) | 281 |
| ZraI | GACGTC | 1 cut(s) | 640 |
| ZrmI | AGTACT | 1 cut(s) | 535 |