RchiOBHm_Chr2g0166751

Homeodomain

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
81371395 .. 81372033
639 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53458

Sequence Viewer

Length: 639 bp
ATGGAGCAACAGACCCAGCAACAAATCGAGGATGGAGGAAACAACCAAGCAGCCGGGACTAATAACCGGTGGGCTCCCACACCGCCTCAACTAAGAATCCTCAAGGGCCTTTACTATGATAAGGGTTTTAAGTACCCAACTCCAGAGCAGATTCACGAGATCTGCCTCCATCTGAAACAGTATGGGCAGATCGAGGACAAAAACGTCTTCTTTTGGTTCCAGAACCTCAAGGCTCGTGAGAGGCAGAAGTTGAAGGAATTTCGGAACGTTCCGGTTGGTGGATCTCTCGATCTCAATTTTGGATCCACTAGTTCTACTAGTAATGACAGATCCACTGACAGATCCATTGATCTAAACTTTGGGTCACGTGTCGGCTATGGTGTTGACCCATATTCCTCCTCACCCTTCAACACTAATACCAGTACTACCTCCTTTGGCACAACAGGAGGACAATCTTTCATGGAACAACGAGGAGGAGATCACCAGGAGATTGAAACCCTTCCACTATTCCCCATGCATGGTGAGGACATCTTTGGCAACATGAAGACTACTTCCGAGGGAGGTGGCGGTTATGGCGGTGGCTCTCACATTTCCCTTGAGCTCAGTCTCAACTCCTACAGAGATGCAGACATGACTTAG

Protein Analysis

212

Amino Acids

23.6

Weight (kDa)

5.36

Isoelectric Point (pI)

50.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 22 - 82 4e-10 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000180)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr0c19g0499991 RchiOBHm_Chr0c19g0500021 RchiOBHm_Chr0c19g0500131 RchiOBHm_Chr0c31g0501321 RchiOBHm_Chr0c31g0501441 RchiOBHm_Chr1g0365611 RchiOBHm_Chr1g0366061 RchiOBHm_Chr1g0367951 RchiOBHm_Chr1g0369471 RchiOBHm_Chr1g0377271 RchiOBHm_Chr1g0379021 RchiOBHm_Chr1g0379461 RchiOBHm_Chr1g0381431 RchiOBHm_Chr1g0383551 RchiOBHm_Chr1g0383621 RchiOBHm_Chr2g0120951 RchiOBHm_Chr2g0121321 RchiOBHm_Chr2g0121381 RchiOBHm_Chr2g0121801 RchiOBHm_Chr2g0121861 RchiOBHm_Chr2g0122211 RchiOBHm_Chr2g0122471 RchiOBHm_Chr2g0122511 RchiOBHm_Chr2g0122751 RchiOBHm_Chr2g0123361 RchiOBHm_Chr2g0124071 RchiOBHm_Chr2g0124341 RchiOBHm_Chr2g0124361 RchiOBHm_Chr2g0124511 RchiOBHm_Chr2g0124641 RchiOBHm_Chr2g0125051 RchiOBHm_Chr2g0125111 RchiOBHm_Chr2g0125641 RchiOBHm_Chr2g0125871 RchiOBHm_Chr2g0125901 RchiOBHm_Chr2g0126011 RchiOBHm_Chr2g0126291 RchiOBHm_Chr2g0126341 RchiOBHm_Chr2g0126611 RchiOBHm_Chr2g0126671 RchiOBHm_Chr2g0126701 RchiOBHm_Chr2g0127021 RchiOBHm_Chr2g0127071 RchiOBHm_Chr2g0127361 RchiOBHm_Chr2g0127691 RchiOBHm_Chr2g0128041 RchiOBHm_Chr2g0128051 RchiOBHm_Chr2g0128061 RchiOBHm_Chr2g0128141 RchiOBHm_Chr2g0128171 RchiOBHm_Chr2g0128181 RchiOBHm_Chr2g0128551 RchiOBHm_Chr2g0128991 RchiOBHm_Chr2g0130061 RchiOBHm_Chr2g0130391 RchiOBHm_Chr2g0130631 RchiOBHm_Chr2g0130921 RchiOBHm_Chr2g0132731 RchiOBHm_Chr2g0133461 RchiOBHm_Chr2g0133921 RchiOBHm_Chr2g0134031 RchiOBHm_Chr2g0134281 RchiOBHm_Chr2g0134351 RchiOBHm_Chr2g0135501 RchiOBHm_Chr2g0135821 RchiOBHm_Chr2g0135931 RchiOBHm_Chr2g0137501 RchiOBHm_Chr2g0139141 RchiOBHm_Chr2g0139511 RchiOBHm_Chr2g0142411 RchiOBHm_Chr2g0143261 RchiOBHm_Chr2g0144171 RchiOBHm_Chr2g0144741 RchiOBHm_Chr2g0144841 RchiOBHm_Chr2g0145021 RchiOBHm_Chr2g0145831 RchiOBHm_Chr2g0145881 RchiOBHm_Chr2g0146081 RchiOBHm_Chr2g0146141 RchiOBHm_Chr2g0146671 RchiOBHm_Chr2g0149001 RchiOBHm_Chr2g0151811 RchiOBHm_Chr2g0151821 RchiOBHm_Chr2g0151831 RchiOBHm_Chr2g0152051 RchiOBHm_Chr2g0154791 RchiOBHm_Chr2g0155541 RchiOBHm_Chr2g0160791 RchiOBHm_Chr2g0161631 RchiOBHm_Chr2g0162151 RchiOBHm_Chr2g0162751 RchiOBHm_Chr2g0166561 RchiOBHm_Chr2g0166751 RchiOBHm_Chr2g0168891 RchiOBHm_Chr2g0170211 RchiOBHm_Chr2g0170781 RchiOBHm_Chr2g0172831 RchiOBHm_Chr2g0174791 RchiOBHm_Chr3g0448081 RchiOBHm_Chr3g0449761 RchiOBHm_Chr3g0453291 RchiOBHm_Chr3g0456271 RchiOBHm_Chr3g0456461 RchiOBHm_Chr3g0458351 RchiOBHm_Chr3g0461411 RchiOBHm_Chr3g0461511 RchiOBHm_Chr3g0463871 RchiOBHm_Chr3g0467841 RchiOBHm_Chr3g0470081 RchiOBHm_Chr3g0470571 RchiOBHm_Chr7g0187061 RchiOBHm_Chr7g0187461 RchiOBHm_Chr7g0187681 RchiOBHm_Chr7g0189901 RchiOBHm_Chr7g0190271 RchiOBHm_Chr7g0193451 RchiOBHm_Chr7g0194081 RchiOBHm_Chr7g0195771 RchiOBHm_Chr7g0196301 RchiOBHm_Chr7g0196911
rosa_multiflora Rmu_sc0000236.1_g000047 Rmu_sc0000284.1_g000007 Rmu_sc0000288.1_g000006 Rmu_sc0000507.1_g000017 Rmu_sc0000580.1_g000015 Rmu_sc0000663.1_g000011 Rmu_sc0000675.1_g000024 Rmu_sc0000693.1_g000072 Rmu_sc0000779.1_g000005 Rmu_sc0000851.1_g000015 Rmu_sc0000962.1_g000001 Rmu_sc0001493.1_g000055 Rmu_sc0001669.1_g000025 Rmu_sc0001891.1_g000051 Rmu_sc0001926.1_g000007 Rmu_sc0002082.1_g000025 Rmu_sc0002141.1_g000001 Rmu_sc0002141.1_g000004 Rmu_sc0002414.1_g000012 Rmu_sc0002557.1_g000022 Rmu_sc0002709.1_g000038 Rmu_sc0002897.1_g000004 Rmu_sc0002934.1_g000055 Rmu_sc0003692.1_g000017 Rmu_sc0004283.1_g000068 Rmu_sc0004598.1_g000010 Rmu_sc0004614.1_g000004 Rmu_sc0004805.1_g000006 Rmu_sc0005142.1_g000041 Rmu_sc0005777.1_g000001 Rmu_sc0006420.1_g000019 Rmu_sc0006803.1_g000016 Rmu_sc0007034.1_g000015 Rmu_sc0008079.1_g000017 Rmu_sc0008148.1_g000040 Rmu_sc0008608.1_g000007 Rmu_sc0008675.1_g000001 Rmu_sc0009663.1_g000001 Rmu_sc0010188.1_g000003 Rmu_sc0010739.1_g000005 Rmu_sc0016265.1_g000001 Rmu_sc0031757.1_g000001 Rmu_ssc0000087.1_g000024 Rmu_ssc0000438.1_g000029
rosa_roxburghii Rroxscaffold_1G00003350
rosa_rugosa Rorug03G0248400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 203
AciI CCGC 3 cut(s) 83, 567, 576
AclI AACGTT 1 cut(s) 267
AclWI GGATC 5 cut(s) 289, 297, 310, 324, 336
AcsI RAATTY 1 cut(s) 257
AcvI CACGTG 1 cut(s) 368
AfaI GTAC 2 cut(s) 134, 424
AfiI CCNNNNNNNGG 2 cut(s) 278, 518
AflIII ACRYGT 1 cut(s) 367
AgeI ACCGGT 1 cut(s) 66
AgsI TTSAA 3 cut(s) 253, 409, 494
AhlI ACTAGT 2 cut(s) 308, 317
AjnI CCWGG 1 cut(s) 483
AluBI AGCT 1 cut(s) 601
AluI AGCT 1 cut(s) 601
Alw21I GWGCWC 1 cut(s) 603
Alw26I GTCTC 1 cut(s) 611
AlwI GGATC 5 cut(s) 289, 297, 310, 324, 336
AoxI GGCC 1 cut(s) 106
ApeKI GCWGC 1 cut(s) 50
ApoI RAATTY 1 cut(s) 257
AsiGI ACCGGT 1 cut(s) 66
Asp700I GAANNNNTTC 1 cut(s) 498
AspS9I GGNCC 1 cut(s) 106
AsuC2I CCSGG 1 cut(s) 55
AsuHPI GGTGA 3 cut(s) 393, 473, 533
BamHI GGATCC 1 cut(s) 302
BanII GRGCYC 2 cut(s) 76, 603
BauI CACGAG 2 cut(s) 155, 234
BbrPI CACGTG 1 cut(s) 368
BbsI GAAGAC 2 cut(s) 199, 551
Bbv12I GWGCWC 1 cut(s) 603
BbvI GCAGC 1 cut(s) 62
BccI CCATC 2 cut(s) 26, 177
BciT130I CCWGG 1 cut(s) 485
BcnI CCSGG 1 cut(s) 55
BcoDI GTCTC 1 cut(s) 611
BcuI ACTAGT 2 cut(s) 308, 317
BfaI CTAG 2 cut(s) 309, 318
BfmI CTRYAG 1 cut(s) 616
BglII AGATCT 1 cut(s) 159
BisI GCNGC 1 cut(s) 51
BlsI GCNGC 1 cut(s) 52
BmcAI AGTACT 1 cut(s) 424
Bme1390I CCNGG 2 cut(s) 55, 485
BmgT120I GGNCC 1 cut(s) 106
BmiI GGNNCC 3 cut(s) 75, 218, 304
BmrFI CCNGG 2 cut(s) 55, 485
BmsI GCATC 1 cut(s) 613
BpiI GAAGAC 2 cut(s) 199, 551
BpmI CTGGAG 1 cut(s) 126
BpuEI CTTGAG 3 cut(s) 86, 212, 617
BpuMI CCSGG 1 cut(s) 55
BsaAI YACGTR 1 cut(s) 368
BsaJI CCNNGG 1 cut(s) 555
BsaWI WCCGGW 2 cut(s) 66, 271
Bsc4I CCNNNNNNNGG 2 cut(s) 278, 518
Bse118I RCCGGY 1 cut(s) 66
Bse1I ACTGG 1 cut(s) 420
BseBI CCWGG 1 cut(s) 485
BseDI CCNNGG 1 cut(s) 555
BseGI GGATG 1 cut(s) 37
BseLI CCNNNNNNNGG 2 cut(s) 278, 518
BseMII CTCAG 1 cut(s) 616
BseNI ACTGG 1 cut(s) 420
BseRI GAGGAG 3 cut(s) 388, 486, 489
BseXI GCAGC 1 cut(s) 62
BseYI CCCAGC 1 cut(s) 15
BshFI GGCC 1 cut(s) 108
BshTI ACCGGT 1 cut(s) 66
BsiHKAI GWGCWC 1 cut(s) 603
BsiSI CCGG 3 cut(s) 54, 67, 272
BslFI GGGAC 1 cut(s) 70
BslI CCNNNNNNNGG 2 cut(s) 278, 518
BsmAI GTCTC 1 cut(s) 611
BsmFI GGGAC 1 cut(s) 70
BsnI GGCC 1 cut(s) 108
Bsp1286I GDGCHC 2 cut(s) 76, 603
Bsp143I GATC 9 cut(s) 159, 189, 281, 289, 302, 329, 341, 349, 478
BspACI CCGC 3 cut(s) 83, 567, 576
BspANI GGCC 1 cut(s) 108
BspCNI CTCAG 1 cut(s) 615
BspLI GGNNCC 3 cut(s) 75, 218, 304
BspPI GGATC 5 cut(s) 289, 297, 310, 324, 336
BsrFI RCCGGY 1 cut(s) 66
BsrI ACTGG 1 cut(s) 420
BssAI RCCGGY 1 cut(s) 66
BssECI CCNNGG 1 cut(s) 555
BssMI GATC 9 cut(s) 159, 189, 281, 289, 302, 329, 341, 349, 478
BssSI CACGAG 2 cut(s) 155, 234
Bst2BI CACGAG 2 cut(s) 155, 234
Bst2UI CCWGG 1 cut(s) 485
Bst4CI ACNGT 1 cut(s) 180
BstBAI YACGTR 1 cut(s) 368
BstDEI CTNAG 3 cut(s) 92, 602, 636
BstF5I GGATG 1 cut(s) 37
BstKTI GATC 9 cut(s) 162, 192, 284, 292, 305, 332, 344, 352, 481
BstMAI GTCTC 1 cut(s) 611
BstMBI GATC 9 cut(s) 159, 189, 281, 289, 302, 329, 341, 349, 478
BstMWI GCNNNNNNNGC 1 cut(s) 573
BstNI CCWGG 1 cut(s) 485
BstSCI CCNGG 2 cut(s) 53, 483
BstSFI CTRYAG 1 cut(s) 616
BstV1I GCAGC 1 cut(s) 62
BstV2I GAAGAC 2 cut(s) 199, 551
BstX2I RGATCY 5 cut(s) 159, 281, 302, 329, 341
BstYI RGATCY 5 cut(s) 159, 281, 302, 329, 341
BsuRI GGCC 1 cut(s) 108
BtsCI GGATG 1 cut(s) 37
BtsIMutI CAGTG 1 cut(s) 333
Cfr10I RCCGGY 1 cut(s) 66
Cfr13I GGNCC 1 cut(s) 106
Csp6I GTAC 2 cut(s) 133, 423
CspAI ACCGGT 1 cut(s) 66
CviAII CATG 5 cut(s) 460, 514, 518, 541, 631
CviJI RGCY 7 cut(s) 53, 74, 108, 233, 375, 582, 601
CviKI_1 RGCY 7 cut(s) 53, 74, 108, 233, 375, 582, 601
CviQI GTAC 2 cut(s) 133, 423
DdeI CTNAG 3 cut(s) 92, 602, 636
DpnI GATC 9 cut(s) 161, 191, 283, 291, 304, 331, 343, 351, 480
DpnII GATC 9 cut(s) 159, 189, 281, 289, 302, 329, 341, 349, 478
DrdI GACNNNNNNGTC 1 cut(s) 203
DseDI GACNNNNNNGTC 1 cut(s) 203
Ecl136II GAGCTC 1 cut(s) 601
Eco24I GRGCYC 2 cut(s) 76, 603
Eco53kI GAGCTC 1 cut(s) 601
Eco72I CACGTG 1 cut(s) 368
EcoICRI GAGCTC 1 cut(s) 601
EcoO109I RGGNCCY 1 cut(s) 106
EcoRII CCWGG 1 cut(s) 483
EcoT22I ATGCAT 1 cut(s) 519
EcoT38I GRGCYC 2 cut(s) 76, 603
FaeI CATG 5 cut(s) 463, 517, 521, 544, 634
FaqI GGGAC 1 cut(s) 70
FatI CATG 5 cut(s) 459, 513, 517, 540, 630
Fnu4HI GCNGC 1 cut(s) 51
FokI GGATG 1 cut(s) 44
FriOI GRGCYC 2 cut(s) 76, 603
Fsp4HI GCNGC 1 cut(s) 51
FspBI CTAG 2 cut(s) 309, 318
GluI GCNGC 1 cut(s) 51
GsaI CCCAGC 1 cut(s) 19
GsuI CTGGAG 1 cut(s) 126
HaeIII GGCC 1 cut(s) 108
HapII CCGG 3 cut(s) 54, 67, 272
Hin1II CATG 5 cut(s) 463, 517, 521, 544, 634
HincII GTYRAC 1 cut(s) 385
HindII GTYRAC 1 cut(s) 385
HinfI GANTC 2 cut(s) 96, 151
HpaII CCGG 3 cut(s) 54, 67, 272
HphI GGTGA 3 cut(s) 393, 473, 533
Hpy166II GTNNAC 1 cut(s) 385
Hpy188I TCNGA 3 cut(s) 174, 264, 556
Hpy188III TCNNGA 5 cut(s) 143, 155, 220, 236, 287
Hpy8I GTNNAC 1 cut(s) 385
HpyAV CCTTC 3 cut(s) 247, 415, 509
HpyCH4III ACNGT 1 cut(s) 180
HpyCH4IV ACGT 3 cut(s) 204, 267, 367
HpyCH4V TGCA 2 cut(s) 517, 626
HpyF10VI GCNNNNNNNGC 1 cut(s) 573
HpyF3I CTNAG 3 cut(s) 92, 602, 636
HpySE526I ACGT 3 cut(s) 204, 267, 367
Hsp92II CATG 5 cut(s) 463, 517, 521, 544, 634
Kzo9I GATC 9 cut(s) 159, 189, 281, 289, 302, 329, 341, 349, 478
LmnI GCTCC 2 cut(s) 4, 79
Lsp1109I GCAGC 1 cut(s) 62
LweI GCATC 1 cut(s) 613
MaeI CTAG 2 cut(s) 309, 318
MaeII ACGT 3 cut(s) 204, 267, 367
MaeIII GTNAC 1 cut(s) 363
MalI GATC 9 cut(s) 161, 191, 283, 291, 304, 331, 343, 351, 480
MboI GATC 9 cut(s) 159, 189, 281, 289, 302, 329, 341, 349, 478
MboII GAAGA 2 cut(s) 199, 556
MflI RGATCY 5 cut(s) 159, 281, 302, 329, 341
MhlI GDGCHC 2 cut(s) 76, 603
MluCI AATT 2 cut(s) 257, 295
Mph1103I ATGCAT 1 cut(s) 519
MroXI GAANNNNTTC 1 cut(s) 498
MseI TTAA 1 cut(s) 129
MspI CCGG 3 cut(s) 54, 67, 272
MspR9I CCNGG 2 cut(s) 55, 485
MvaI CCWGG 1 cut(s) 485
MwoI GCNNNNNNNGC 1 cut(s) 573
NciI CCSGG 1 cut(s) 55
NdeII GATC 9 cut(s) 159, 189, 281, 289, 302, 329, 341, 349, 478
NlaIII CATG 5 cut(s) 463, 517, 521, 544, 634
NlaIV GGNNCC 3 cut(s) 75, 218, 304
NmuCI GTSAC 1 cut(s) 363
NsiI ATGCAT 1 cut(s) 519
PdmI GAANNNNTTC 1 cut(s) 498
PfeI GAWTC 2 cut(s) 96, 151
PinAI ACCGGT 1 cut(s) 66
PkrI GCNGC 1 cut(s) 52
PmaCI CACGTG 1 cut(s) 368
PmlI CACGTG 1 cut(s) 368
Ppu21I YACGTR 1 cut(s) 368
Psp124BI GAGCTC 1 cut(s) 603
Psp1406I AACGTT 1 cut(s) 267
Psp6I CCWGG 1 cut(s) 483
PspCI CACGTG 1 cut(s) 368
PspFI CCCAGC 1 cut(s) 15
PspGI CCWGG 1 cut(s) 483
PspN4I GGNNCC 3 cut(s) 75, 218, 304
PspPI GGNCC 1 cut(s) 106
PsuI RGATCY 5 cut(s) 159, 281, 302, 329, 341
RsaI GTAC 2 cut(s) 134, 424
RsaNI GTAC 2 cut(s) 133, 423
SacI GAGCTC 1 cut(s) 603
SaqAI TTAA 1 cut(s) 129
SatI GCNGC 1 cut(s) 51
Sau3AI GATC 9 cut(s) 159, 189, 281, 289, 302, 329, 341, 349, 478
Sau96I GGNCC 1 cut(s) 106
ScaI AGTACT 1 cut(s) 424
ScrFI CCNGG 2 cut(s) 55, 485
SduI GDGCHC 2 cut(s) 76, 603
SetI ASST 7 cut(s) 207, 228, 270, 370, 431, 565, 603
SfaNI GCATC 1 cut(s) 613
SfcI CTRYAG 1 cut(s) 616
SmlI CTYRAG 3 cut(s) 101, 227, 596
SmoI CTYRAG 3 cut(s) 101, 227, 596
SpeI ACTAGT 2 cut(s) 308, 317
Sse9I AATT 2 cut(s) 257, 295
SsiI CCGC 3 cut(s) 83, 567, 576
SspMI CTAG 2 cut(s) 309, 318
SstI GAGCTC 1 cut(s) 603
StyD4I CCNGG 2 cut(s) 53, 483
TaaI ACNGT 1 cut(s) 180
TaiI ACGT 3 cut(s) 207, 270, 370
TaqI TCGA 3 cut(s) 27, 192, 288
TasI AATT 2 cut(s) 257, 295
TatI WGTACW 1 cut(s) 422
TfiI GAWTC 2 cut(s) 96, 151
Tru1I TTAA 1 cut(s) 129
Tru9I TTAA 1 cut(s) 129
TscAI CASTG 1 cut(s) 340
TseFI GTSAC 1 cut(s) 363
TseI GCWGC 1 cut(s) 50
Tsp45I GTSAC 1 cut(s) 363
TspDTI ATGAA 2 cut(s) 448, 557
TspRI CASTG 1 cut(s) 340
XapI RAATTY 1 cut(s) 257
XmnI GAANNNNTTC 1 cut(s) 498
XspI CTAG 2 cut(s) 309, 318
ZrmI AGTACT 1 cut(s) 424
Zsp2I ATGCAT 1 cut(s) 519
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.