Homeodomain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 737 |
| AclI | AACGTT | 1 cut(s) | 342 |
| AclWI | GGATC | 5 cut(s) | 364, 372, 385, 399, 460 |
| AcsI | RAATTY | 1 cut(s) | 332 |
| AcuI | CTGAAG | 2 cut(s) | 161, 341 |
| AfaI | GTAC | 2 cut(s) | 445, 535 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 141, 557, 629, 649, 650 |
| AgeI | ACCGGT | 1 cut(s) | 141 |
| AgsI | TTSAA | 4 cut(s) | 35, 230, 438, 520 |
| AjnI | CCWGG | 2 cut(s) | 75, 594 |
| AleI | CACNNNNGTG | 1 cut(s) | 696 |
| AluBI | AGCT | 5 cut(s) | 22, 31, 161, 721, 743 |
| AluI | AGCT | 5 cut(s) | 22, 31, 161, 721, 743 |
| Alw21I | GWGCWC | 2 cut(s) | 630, 723 |
| Alw44I | GTGCAC | 1 cut(s) | 626 |
| AlwI | GGATC | 5 cut(s) | 364, 372, 385, 399, 460 |
| Ama87I | CYCGRG | 1 cut(s) | 644 |
| Aor13HI | TCCGGA | 1 cut(s) | 737 |
| AoxI | GGCC | 1 cut(s) | 547 |
| ApaLI | GTGCAC | 1 cut(s) | 626 |
| ApeKI | GCWGC | 3 cut(s) | 19, 98, 743 |
| ApoI | RAATTY | 1 cut(s) | 332 |
| AsiGI | ACCGGT | 1 cut(s) | 141 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 281, 609 |
| AspS9I | GGNCC | 2 cut(s) | 474, 548 |
| AsuC2I | CCSGG | 3 cut(s) | 103, 645, 646 |
| AsuHPI | GGTGA | 4 cut(s) | 131, 504, 584, 644 |
| AvaI | CYCGRG | 1 cut(s) | 644 |
| AvaII | GGWCC | 1 cut(s) | 474 |
| BaeGI | GKGCMC | 1 cut(s) | 630 |
| BamHI | GGATCC | 1 cut(s) | 377 |
| BanII | GRGCYC | 2 cut(s) | 186, 723 |
| BauI | CACGAG | 1 cut(s) | 309 |
| BbsI | GAAGAC | 1 cut(s) | 233 |
| Bbv12I | GWGCWC | 2 cut(s) | 630, 723 |
| BbvI | GCAGC | 3 cut(s) | 31, 110, 730 |
| BccI | CCATC | 1 cut(s) | 392 |
| BciT130I | CCWGG | 2 cut(s) | 77, 596 |
| BcnI | CCSGG | 3 cut(s) | 103, 645, 646 |
| BfmI | CTRYAG | 1 cut(s) | 17 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 127 |
| BglII | AGATCT | 1 cut(s) | 234 |
| BisI | GCNGC | 3 cut(s) | 20, 99, 744 |
| BlsI | GCNGC | 3 cut(s) | 21, 100, 745 |
| BmcAI | AGTACT | 1 cut(s) | 535 |
| Bme1390I | CCNGG | 5 cut(s) | 77, 103, 596, 645, 646 |
| Bme18I | GGWCC | 1 cut(s) | 474 |
| BmeT110I | CYCGRG | 1 cut(s) | 644 |
| BmgT120I | GGNCC | 2 cut(s) | 474, 548 |
| BmiI | GGNNCC | 6 cut(s) | 6, 293, 379, 427, 475, 476 |
| BmrFI | CCNGG | 5 cut(s) | 77, 103, 596, 645, 646 |
| BmsI | GCATC | 1 cut(s) | 189 |
| BpiI | GAAGAC | 1 cut(s) | 233 |
| BpmI | CTGGAG | 1 cut(s) | 201 |
| Bpu10I | CCTNAGC | 1 cut(s) | 682 |
| BpuEI | CTTGAG | 2 cut(s) | 287, 737 |
| BpuMI | CCSGG | 3 cut(s) | 103, 645, 646 |
| Bsa29I | ATCGAT | 1 cut(s) | 459 |
| BsaJI | CCNNGG | 5 cut(s) | 75, 570, 643, 644, 645 |
| BsaWI | WCCGGW | 3 cut(s) | 141, 674, 737 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 141, 557, 629, 649, 650 |
| Bse118I | RCCGGY | 1 cut(s) | 141 |
| Bse1I | ACTGG | 2 cut(s) | 436, 445 |
| BseAI | TCCGGA | 1 cut(s) | 737 |
| BseBI | CCWGG | 2 cut(s) | 77, 596 |
| BseCI | ATCGAT | 1 cut(s) | 459 |
| BseDI | CCNNGG | 5 cut(s) | 75, 570, 643, 644, 645 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 141, 557, 629, 649, 650 |
| BseMII | CTCAG | 2 cut(s) | 696, 736 |
| BseNI | ACTGG | 2 cut(s) | 436, 445 |
| BseRI | GAGGAG | 3 cut(s) | 499, 597, 600 |
| BseSI | GKGCMC | 1 cut(s) | 630 |
| BseXI | GCAGC | 3 cut(s) | 31, 110, 730 |
| BseYI | CCCAGC | 2 cut(s) | 39, 63 |
| BshFI | GGCC | 1 cut(s) | 549 |
| BshTI | ACCGGT | 1 cut(s) | 141 |
| BshVI | ATCGAT | 1 cut(s) | 459 |
| BsiHKAI | GWGCWC | 2 cut(s) | 630, 723 |
| BsiHKCI | CYCGRG | 1 cut(s) | 644 |
| BsiSI | CCGG | 5 cut(s) | 102, 142, 645, 675, 738 |
| BslFI | GGGAC | 3 cut(s) | 460, 626, 711 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 141, 557, 629, 649, 650 |
| BsmFI | GGGAC | 3 cut(s) | 460, 626, 711 |
| BsnI | GGCC | 1 cut(s) | 549 |
| BsoBI | CYCGRG | 1 cut(s) | 644 |
| Bsp1286I | GDGCHC | 3 cut(s) | 186, 630, 723 |
| Bsp13I | TCCGGA | 1 cut(s) | 737 |
| Bsp19I | CCATGG | 1 cut(s) | 570 |
| BspANI | GGCC | 1 cut(s) | 549 |
| BspCNI | CTCAG | 2 cut(s) | 695, 735 |
| BspDI | ATCGAT | 1 cut(s) | 459 |
| BspEI | TCCGGA | 1 cut(s) | 737 |
| BspLI | GGNNCC | 6 cut(s) | 6, 293, 379, 427, 475, 476 |
| BspMAI | CTGCAG | 1 cut(s) | 21 |
| BspPI | GGATC | 5 cut(s) | 364, 372, 385, 399, 460 |
| BsrFI | RCCGGY | 1 cut(s) | 141 |
| BsrI | ACTGG | 2 cut(s) | 436, 445 |
| BssAI | RCCGGY | 1 cut(s) | 141 |
| BssECI | CCNNGG | 5 cut(s) | 75, 570, 643, 644, 645 |
| BssSI | CACGAG | 1 cut(s) | 309 |
| BssT1I | CCWWGG | 1 cut(s) | 570 |
| Bst2BI | CACGAG | 1 cut(s) | 309 |
| Bst2UI | CCWGG | 2 cut(s) | 77, 596 |
| Bst4CI | ACNGT | 2 cut(s) | 632, 698 |
| Bst6I | CTCTTC | 2 cut(s) | 287, 615 |
| BstDEI | CTNAG | 3 cut(s) | 167, 682, 722 |
| BstDSI | CCRYGG | 1 cut(s) | 570 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 28, 127, 752 |
| BstNI | CCWGG | 2 cut(s) | 77, 596 |
| BstSCI | CCNGG | 5 cut(s) | 75, 101, 594, 643, 644 |
| BstSFI | CTRYAG | 1 cut(s) | 17 |
| BstSLI | GKGCMC | 1 cut(s) | 630 |
| BstV1I | GCAGC | 3 cut(s) | 31, 110, 730 |
| BstV2I | GAAGAC | 1 cut(s) | 233 |
| BstX2I | RGATCY | 4 cut(s) | 234, 356, 377, 404 |
| BstYI | RGATCY | 4 cut(s) | 234, 356, 377, 404 |
| Bsu15I | ATCGAT | 1 cut(s) | 459 |
| BsuRI | GGCC | 1 cut(s) | 549 |
| BsuTUI | ATCGAT | 1 cut(s) | 459 |
| BtgI | CCRYGG | 1 cut(s) | 570 |
| BtsIMutI | CAGTG | 2 cut(s) | 429, 703 |
| Cfr10I | RCCGGY | 1 cut(s) | 141 |
| Cfr13I | GGNCC | 2 cut(s) | 474, 548 |
| Cfr9I | CCCGGG | 1 cut(s) | 644 |
| ClaI | ATCGAT | 1 cut(s) | 459 |
| Csp6I | GTAC | 2 cut(s) | 444, 534 |
| CspAI | ACCGGT | 1 cut(s) | 141 |
| CviAII | CATG | 1 cut(s) | 571 |
| CviQI | GTAC | 2 cut(s) | 444, 534 |
| DdeI | CTNAG | 3 cut(s) | 167, 682, 722 |
| Eam1104I | CTCTTC | 2 cut(s) | 287, 615 |
| EarI | CTCTTC | 2 cut(s) | 287, 615 |
| Ecl136II | GAGCTC | 1 cut(s) | 721 |
| Eco130I | CCWWGG | 1 cut(s) | 570 |
| Eco24I | GRGCYC | 2 cut(s) | 186, 723 |
| Eco47I | GGWCC | 1 cut(s) | 474 |
| Eco53kI | GAGCTC | 1 cut(s) | 721 |
| Eco57I | CTGAAG | 2 cut(s) | 161, 341 |
| Eco88I | CYCGRG | 1 cut(s) | 644 |
| EcoICRI | GAGCTC | 1 cut(s) | 721 |
| EcoO109I | RGGNCCY | 1 cut(s) | 474 |
| EcoRII | CCWGG | 2 cut(s) | 75, 594 |
| EcoT14I | CCWWGG | 1 cut(s) | 570 |
| EcoT38I | GRGCYC | 2 cut(s) | 186, 723 |
| ErhI | CCWWGG | 1 cut(s) | 570 |
| FaeI | CATG | 1 cut(s) | 574 |
| FaiI | YATR | 6 cut(s) | 192, 258, 489, 502, 572, 757 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 266, 298 |
| FaqI | GGGAC | 3 cut(s) | 460, 626, 711 |
| FatI | CATG | 1 cut(s) | 570 |
| Fnu4HI | GCNGC | 3 cut(s) | 20, 99, 744 |
| FriOI | GRGCYC | 2 cut(s) | 186, 723 |
| Fsp4HI | GCNGC | 3 cut(s) | 20, 99, 744 |
| GluI | GCNGC | 3 cut(s) | 20, 99, 744 |
| GsaI | CCCAGC | 2 cut(s) | 43, 67 |
| GsuI | CTGGAG | 1 cut(s) | 201 |
| HaeIII | GGCC | 1 cut(s) | 549 |
| HapII | CCGG | 5 cut(s) | 102, 142, 645, 675, 738 |
| Hin1II | CATG | 1 cut(s) | 574 |
| HinfI | GANTC | 3 cut(s) | 148, 171, 226 |
| HpaII | CCGG | 5 cut(s) | 102, 142, 645, 675, 738 |
| HphI | GGTGA | 4 cut(s) | 131, 504, 584, 644 |
| Hpy166II | GTNNAC | 2 cut(s) | 147, 628 |
| Hpy188I | TCNGA | 1 cut(s) | 339 |
| Hpy188III | TCNNGA | 7 cut(s) | 218, 230, 295, 311, 362, 716, 738 |
| Hpy8I | GTNNAC | 2 cut(s) | 147, 628 |
| HpyAV | CCTTC | 3 cut(s) | 185, 526, 744 |
| HpyCH4III | ACNGT | 2 cut(s) | 632, 698 |
| HpyCH4IV | ACGT | 2 cut(s) | 342, 639 |
| HpyCH4V | TGCA | 3 cut(s) | 19, 250, 628 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 28, 127, 752 |
| HpyF3I | CTNAG | 3 cut(s) | 167, 682, 722 |
| HpySE526I | ACGT | 2 cut(s) | 342, 639 |
| Hsp92II | CATG | 1 cut(s) | 574 |
| KflI | GGGWCCC | 1 cut(s) | 474 |
| Kpn2I | TCCGGA | 1 cut(s) | 737 |
| LmnI | GCTCC | 2 cut(s) | 28, 740 |
| Lsp1109I | GCAGC | 3 cut(s) | 31, 110, 730 |
| LweI | GCATC | 1 cut(s) | 189 |
| MaeII | ACGT | 2 cut(s) | 342, 639 |
| MaeIII | GTNAC | 3 cut(s) | 653, 665, 689 |
| MboII | GAAGA | 4 cut(s) | 233, 274, 558, 602 |
| MflI | RGATCY | 4 cut(s) | 234, 356, 377, 404 |
| MhlI | GDGCHC | 3 cut(s) | 186, 630, 723 |
| MluCI | AATT | 2 cut(s) | 332, 370 |
| MlyI | GAGTC | 1 cut(s) | 142 |
| MroI | TCCGGA | 1 cut(s) | 737 |
| MroXI | GAANNNNTTC | 2 cut(s) | 281, 609 |
| MseI | TTAA | 1 cut(s) | 204 |
| MslI | CAYNNNNRTG | 1 cut(s) | 696 |
| MspI | CCGG | 5 cut(s) | 102, 142, 645, 675, 738 |
| MspR9I | CCNGG | 5 cut(s) | 77, 103, 596, 645, 646 |
| MvaI | CCWGG | 2 cut(s) | 77, 596 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 28, 127, 752 |
| NciI | CCSGG | 3 cut(s) | 103, 645, 646 |
| NcoI | CCATGG | 1 cut(s) | 570 |
| NlaIII | CATG | 1 cut(s) | 574 |
| NlaIV | GGNNCC | 6 cut(s) | 6, 293, 379, 427, 475, 476 |
| NmuCI | GTSAC | 1 cut(s) | 689 |
| OliI | CACNNNNGTG | 1 cut(s) | 696 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 456, 636 |
| PdmI | GAANNNNTTC | 2 cut(s) | 281, 609 |
| PfeI | GAWTC | 2 cut(s) | 171, 226 |
| PinAI | ACCGGT | 1 cut(s) | 141 |
| PkrI | GCNGC | 3 cut(s) | 21, 100, 745 |
| PleI | GAGTC | 1 cut(s) | 142 |
| PpsI | GAGTC | 1 cut(s) | 142 |
| PpuMI | RGGWCCY | 1 cut(s) | 474 |
| Psp124BI | GAGCTC | 1 cut(s) | 723 |
| Psp1406I | AACGTT | 1 cut(s) | 342 |
| Psp5II | RGGWCCY | 1 cut(s) | 474 |
| Psp6I | CCWGG | 2 cut(s) | 75, 594 |
| PspFI | CCCAGC | 2 cut(s) | 39, 63 |
| PspGI | CCWGG | 2 cut(s) | 75, 594 |
| PspN4I | GGNNCC | 6 cut(s) | 6, 293, 379, 427, 475, 476 |
| PspPI | GGNCC | 2 cut(s) | 474, 548 |
| PspPPI | RGGWCCY | 1 cut(s) | 474 |
| PstI | CTGCAG | 1 cut(s) | 21 |
| PsuI | RGATCY | 4 cut(s) | 234, 356, 377, 404 |
| RsaI | GTAC | 2 cut(s) | 445, 535 |
| RsaNI | GTAC | 2 cut(s) | 444, 534 |
| RseI | CAYNNNNRTG | 1 cut(s) | 696 |
| SacI | GAGCTC | 1 cut(s) | 723 |
| SaqAI | TTAA | 1 cut(s) | 204 |
| SatI | GCNGC | 3 cut(s) | 20, 99, 744 |
| Sau96I | GGNCC | 2 cut(s) | 474, 548 |
| ScaI | AGTACT | 1 cut(s) | 535 |
| SchI | GAGTC | 1 cut(s) | 142 |
| ScrFI | CCNGG | 5 cut(s) | 77, 103, 596, 645, 646 |
| SduI | GDGCHC | 3 cut(s) | 186, 630, 723 |
| SfaNI | GCATC | 1 cut(s) | 189 |
| SfcI | CTRYAG | 1 cut(s) | 17 |
| SgrAI | CRCCGGYG | 1 cut(s) | 141 |
| SinI | GGWCC | 1 cut(s) | 474 |
| SmaI | CCCGGG | 1 cut(s) | 646 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 696 |
| SmlI | CTYRAG | 2 cut(s) | 302, 716 |
| SmoI | CTYRAG | 2 cut(s) | 302, 716 |
| Sse9I | AATT | 2 cut(s) | 332, 370 |
| SstI | GAGCTC | 1 cut(s) | 723 |
| StyD4I | CCNGG | 5 cut(s) | 75, 101, 594, 643, 644 |
| StyI | CCWWGG | 1 cut(s) | 570 |
| TaaI | ACNGT | 2 cut(s) | 632, 698 |
| TaiI | ACGT | 2 cut(s) | 345, 642 |
| TaqI | TCGA | 4 cut(s) | 267, 363, 459, 603 |
| TasI | AATT | 2 cut(s) | 332, 370 |
| TatI | WGTACW | 1 cut(s) | 533 |
| TfiI | GAWTC | 2 cut(s) | 171, 226 |
| Tru1I | TTAA | 1 cut(s) | 204 |
| Tru9I | TTAA | 1 cut(s) | 204 |
| TscAI | CASTG | 2 cut(s) | 436, 703 |
| TseFI | GTSAC | 1 cut(s) | 689 |
| TseI | GCWGC | 3 cut(s) | 19, 98, 743 |
| Tsp45I | GTSAC | 1 cut(s) | 689 |
| TspDTI | ATGAA | 1 cut(s) | 233 |
| TspGWI | ACGGA | 1 cut(s) | 465 |
| TspMI | CCCGGG | 1 cut(s) | 644 |
| TspRI | CASTG | 2 cut(s) | 436, 703 |
| VneI | GTGCAC | 1 cut(s) | 626 |
| VpaK11BI | GGWCC | 1 cut(s) | 474 |
| XapI | RAATTY | 1 cut(s) | 332 |
| XmaI | CCCGGG | 1 cut(s) | 644 |
| XmnI | GAANNNNTTC | 2 cut(s) | 281, 609 |
| ZrmI | AGTACT | 1 cut(s) | 535 |