Homeodomain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 804 |
| AclI | AACGTT | 2 cut(s) | 279, 342 |
| AclWI | GGATC | 8 cut(s) | 242, 351, 364, 372, 385, 399, 420, 460 |
| AcsI | RAATTY | 2 cut(s) | 333, 371 |
| AfaI | GTAC | 1 cut(s) | 550 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 141, 629, 668 |
| AflII | CTTAAG | 1 cut(s) | 692 |
| AgeI | ACCGGT | 1 cut(s) | 141 |
| AgsI | TTSAA | 4 cut(s) | 35, 230, 328, 520 |
| AjnI | CCWGG | 2 cut(s) | 177, 594 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 666, 698 |
| AluBI | AGCT | 4 cut(s) | 31, 161, 184, 781 |
| AluI | AGCT | 4 cut(s) | 31, 161, 184, 781 |
| Alw21I | GWGCWC | 3 cut(s) | 630, 669, 783 |
| Alw26I | GTCTC | 4 cut(s) | 244, 245, 599, 638 |
| AlwI | GGATC | 8 cut(s) | 242, 351, 364, 372, 385, 399, 420, 460 |
| AoxI | GGCC | 1 cut(s) | 128 |
| ApeKI | GCWGC | 1 cut(s) | 98 |
| ApoI | RAATTY | 2 cut(s) | 333, 371 |
| AsiGI | ACCGGT | 1 cut(s) | 141 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 281 |
| AspLEI | GCGC | 1 cut(s) | 719 |
| AsuC2I | CCSGG | 1 cut(s) | 103 |
| AsuHPI | GGTGA | 6 cut(s) | 64, 455, 504, 584, 683, 756 |
| BaeGI | GKGCMC | 1 cut(s) | 202 |
| BamHI | GGATCC | 2 cut(s) | 356, 377 |
| BanII | GRGCYC | 1 cut(s) | 783 |
| BauI | CACGAG | 1 cut(s) | 309 |
| BbsI | GAAGAC | 1 cut(s) | 681 |
| Bbv12I | GWGCWC | 3 cut(s) | 630, 669, 783 |
| BbvI | GCAGC | 1 cut(s) | 110 |
| BccI | CCATC | 3 cut(s) | 252, 389, 443 |
| BciT130I | CCWGG | 2 cut(s) | 179, 596 |
| BcnI | CCSGG | 1 cut(s) | 103 |
| BcoDI | GTCTC | 4 cut(s) | 244, 245, 599, 638 |
| BfrI | CTTAAG | 1 cut(s) | 692 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 127 |
| BisI | GCNGC | 2 cut(s) | 99, 804 |
| BlpI | GCTNAGC | 1 cut(s) | 782 |
| BlsI | GCNGC | 2 cut(s) | 100, 805 |
| Bme1390I | CCNGG | 3 cut(s) | 103, 179, 596 |
| BmiI | GGNNCC | 6 cut(s) | 6, 293, 358, 379, 427, 802 |
| BmrFI | CCNGG | 3 cut(s) | 103, 179, 596 |
| BpiI | GAAGAC | 1 cut(s) | 681 |
| BpmI | CTGGAG | 2 cut(s) | 161, 201 |
| Bpu10I | CCTNAGC | 3 cut(s) | 624, 663, 742 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 782 |
| BpuEI | CTTGAG | 2 cut(s) | 287, 797 |
| BpuMI | CCSGG | 1 cut(s) | 103 |
| Bsa29I | ATCGAT | 2 cut(s) | 455, 459 |
| BsaI | GGTCTC | 1 cut(s) | 244 |
| BsaJI | CCNNGG | 4 cut(s) | 75, 408, 682, 705 |
| BsaWI | WCCGGW | 1 cut(s) | 141 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 141, 629, 668 |
| Bse118I | RCCGGY | 1 cut(s) | 141 |
| Bse1I | ACTGG | 2 cut(s) | 436, 445 |
| BseBI | CCWGG | 2 cut(s) | 179, 596 |
| BseCI | ATCGAT | 2 cut(s) | 455, 459 |
| BseDI | CCNNGG | 4 cut(s) | 75, 408, 682, 705 |
| BseGI | GGATG | 2 cut(s) | 678, 701 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 141, 629, 668 |
| BseMII | CTCAG | 6 cut(s) | 158, 239, 615, 654, 756, 796 |
| BseNI | ACTGG | 2 cut(s) | 436, 445 |
| BseRI | GAGGAG | 3 cut(s) | 92, 499, 600 |
| BseSI | GKGCMC | 1 cut(s) | 202 |
| BseXI | GCAGC | 1 cut(s) | 110 |
| BseYI | CCCAGC | 1 cut(s) | 63 |
| Bsh1285I | CGRYCG | 1 cut(s) | 459 |
| BshFI | GGCC | 1 cut(s) | 130 |
| BshTI | ACCGGT | 1 cut(s) | 141 |
| BshVI | ATCGAT | 2 cut(s) | 455, 459 |
| BsiEI | CGRYCG | 1 cut(s) | 459 |
| BsiHKAI | GWGCWC | 3 cut(s) | 630, 669, 783 |
| BsiSI | CCGG | 2 cut(s) | 102, 142 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 141, 629, 668 |
| BsmAI | GTCTC | 4 cut(s) | 244, 245, 599, 638 |
| BsnI | GGCC | 1 cut(s) | 130 |
| Bso31I | GGTCTC | 1 cut(s) | 244 |
| Bsp1286I | GDGCHC | 4 cut(s) | 202, 630, 669, 783 |
| Bsp1407I | TGTACA | 1 cut(s) | 548 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 782 |
| Bsp19I | CCATGG | 1 cut(s) | 408 |
| BspACI | CCGC | 1 cut(s) | 804 |
| BspANI | GGCC | 1 cut(s) | 130 |
| BspCNI | CTCAG | 6 cut(s) | 159, 240, 616, 655, 755, 795 |
| BspDI | ATCGAT | 2 cut(s) | 455, 459 |
| BspLI | GGNNCC | 6 cut(s) | 6, 293, 358, 379, 427, 802 |
| BspPI | GGATC | 8 cut(s) | 242, 351, 364, 372, 385, 399, 420, 460 |
| BspTI | CTTAAG | 1 cut(s) | 692 |
| BspTNI | GGTCTC | 1 cut(s) | 244 |
| BsrFI | RCCGGY | 1 cut(s) | 141 |
| BsrGI | TGTACA | 1 cut(s) | 548 |
| BsrI | ACTGG | 2 cut(s) | 436, 445 |
| BssAI | RCCGGY | 1 cut(s) | 141 |
| BssECI | CCNNGG | 4 cut(s) | 75, 408, 682, 705 |
| BssSI | CACGAG | 1 cut(s) | 309 |
| BssT1I | CCWWGG | 2 cut(s) | 408, 682 |
| Bst2BI | CACGAG | 1 cut(s) | 309 |
| Bst2UI | CCWGG | 2 cut(s) | 179, 596 |
| Bst4CI | ACNGT | 3 cut(s) | 632, 671, 758 |
| Bst6I | CTCTTC | 2 cut(s) | 615, 654 |
| BstAFI | CTTAAG | 1 cut(s) | 692 |
| BstAUI | TGTACA | 1 cut(s) | 548 |
| BstDEI | CTNAG | 6 cut(s) | 167, 248, 624, 663, 742, 782 |
| BstDSI | CCRYGG | 1 cut(s) | 408 |
| BstEII | GGTNACC | 1 cut(s) | 686 |
| BstF5I | GGATG | 2 cut(s) | 678, 701 |
| BstHHI | GCGC | 1 cut(s) | 719 |
| BstMAI | GTCTC | 4 cut(s) | 244, 245, 599, 638 |
| BstMCI | CGRYCG | 1 cut(s) | 459 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 127 |
| BstNI | CCWGG | 2 cut(s) | 179, 596 |
| BstPI | GGTNACC | 1 cut(s) | 686 |
| BstSCI | CCNGG | 3 cut(s) | 101, 177, 594 |
| BstSLI | GKGCMC | 1 cut(s) | 202 |
| BstV1I | GCAGC | 1 cut(s) | 110 |
| BstV2I | GAAGAC | 1 cut(s) | 681 |
| BstX2I | RGATCY | 5 cut(s) | 234, 356, 377, 404, 412 |
| BstYI | RGATCY | 5 cut(s) | 234, 356, 377, 404, 412 |
| Bsu15I | ATCGAT | 2 cut(s) | 455, 459 |
| BsuRI | GGCC | 1 cut(s) | 130 |
| BsuTUI | ATCGAT | 2 cut(s) | 455, 459 |
| BtgI | CCRYGG | 1 cut(s) | 408 |
| BtsCI | GGATG | 2 cut(s) | 678, 701 |
| BtsIMutI | CAGTG | 2 cut(s) | 429, 763 |
| CfoI | GCGC | 1 cut(s) | 719 |
| Cfr10I | RCCGGY | 1 cut(s) | 141 |
| ClaI | ATCGAT | 2 cut(s) | 455, 459 |
| CseI | GACGC | 1 cut(s) | 469 |
| Csp6I | GTAC | 1 cut(s) | 549 |
| CspAI | ACCGGT | 1 cut(s) | 141 |
| CviAII | CATG | 3 cut(s) | 409, 477, 571 |
| CviQI | GTAC | 1 cut(s) | 549 |
| DdeI | CTNAG | 6 cut(s) | 167, 248, 624, 663, 742, 782 |
| Eam1104I | CTCTTC | 2 cut(s) | 615, 654 |
| EarI | CTCTTC | 2 cut(s) | 615, 654 |
| Ecl136II | GAGCTC | 1 cut(s) | 781 |
| Eco130I | CCWWGG | 2 cut(s) | 408, 682 |
| Eco24I | GRGCYC | 1 cut(s) | 783 |
| Eco31I | GGTCTC | 1 cut(s) | 244 |
| Eco53kI | GAGCTC | 1 cut(s) | 781 |
| Eco91I | GGTNACC | 1 cut(s) | 686 |
| EcoICRI | GAGCTC | 1 cut(s) | 781 |
| EcoO65I | GGTNACC | 1 cut(s) | 686 |
| EcoRII | CCWGG | 2 cut(s) | 177, 594 |
| EcoT14I | CCWWGG | 2 cut(s) | 408, 682 |
| EcoT38I | GRGCYC | 1 cut(s) | 783 |
| ErhI | CCWWGG | 2 cut(s) | 408, 682 |
| FaeI | CATG | 3 cut(s) | 412, 480, 574 |
| FaiI | YATR | 6 cut(s) | 258, 410, 478, 489, 502, 572 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 666, 698 |
| FatI | CATG | 3 cut(s) | 408, 476, 570 |
| Fnu4HI | GCNGC | 2 cut(s) | 99, 804 |
| FokI | GGATG | 2 cut(s) | 665, 688 |
| FriOI | GRGCYC | 1 cut(s) | 783 |
| Fsp4HI | GCNGC | 2 cut(s) | 99, 804 |
| GlaI | GCGC | 1 cut(s) | 718 |
| GluI | GCNGC | 2 cut(s) | 99, 804 |
| GsaI | CCCAGC | 1 cut(s) | 67 |
| GsuI | CTGGAG | 2 cut(s) | 161, 201 |
| HaeIII | GGCC | 1 cut(s) | 130 |
| HapII | CCGG | 2 cut(s) | 102, 142 |
| HgaI | GACGC | 1 cut(s) | 469 |
| HhaI | GCGC | 1 cut(s) | 719 |
| Hin1II | CATG | 3 cut(s) | 412, 480, 574 |
| Hin6I | GCGC | 1 cut(s) | 717 |
| HinP1I | GCGC | 1 cut(s) | 717 |
| HincII | GTYRAC | 1 cut(s) | 496 |
| HindII | GTYRAC | 1 cut(s) | 496 |
| HinfI | GANTC | 5 cut(s) | 148, 171, 226, 607, 646 |
| HpaII | CCGG | 2 cut(s) | 102, 142 |
| HphI | GGTGA | 6 cut(s) | 64, 455, 504, 584, 683, 756 |
| Hpy166II | GTNNAC | 2 cut(s) | 147, 496 |
| Hpy188I | TCNGA | 4 cut(s) | 249, 339, 706, 800 |
| Hpy188III | TCNNGA | 8 cut(s) | 218, 268, 295, 311, 604, 635, 643, 776 |
| Hpy8I | GTNNAC | 2 cut(s) | 147, 496 |
| Hpy99I | CGWCG | 1 cut(s) | 485 |
| HpyAV | CCTTC | 2 cut(s) | 322, 704 |
| HpyCH4III | ACNGT | 3 cut(s) | 632, 671, 758 |
| HpyCH4IV | ACGT | 3 cut(s) | 279, 342, 580 |
| HpyCH4V | TGCA | 1 cut(s) | 19 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 127 |
| HpyF3I | CTNAG | 6 cut(s) | 167, 248, 624, 663, 742, 782 |
| HpySE526I | ACGT | 3 cut(s) | 279, 342, 580 |
| Hsp92II | CATG | 3 cut(s) | 412, 480, 574 |
| HspAI | GCGC | 1 cut(s) | 717 |
| LmnI | GCTCC | 3 cut(s) | 28, 181, 800 |
| Lsp1109I | GCAGC | 1 cut(s) | 110 |
| MaeII | ACGT | 3 cut(s) | 279, 342, 580 |
| MaeIII | GTNAC | 3 cut(s) | 686, 725, 749 |
| MboII | GAAGA | 3 cut(s) | 602, 641, 686 |
| MflI | RGATCY | 5 cut(s) | 234, 356, 377, 404, 412 |
| MhlI | GDGCHC | 4 cut(s) | 202, 630, 669, 783 |
| MluCI | AATT | 2 cut(s) | 333, 371 |
| MlyI | GAGTC | 3 cut(s) | 142, 601, 640 |
| MroXI | GAANNNNTTC | 1 cut(s) | 281 |
| MseI | TTAA | 3 cut(s) | 204, 693, 811 |
| MspCI | CTTAAG | 1 cut(s) | 692 |
| MspI | CCGG | 2 cut(s) | 102, 142 |
| MspR9I | CCNGG | 3 cut(s) | 103, 179, 596 |
| MvaI | CCWGG | 2 cut(s) | 179, 596 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 127 |
| NciI | CCSGG | 1 cut(s) | 103 |
| NcoI | CCATGG | 1 cut(s) | 408 |
| NlaIII | CATG | 3 cut(s) | 412, 480, 574 |
| NlaIV | GGNNCC | 6 cut(s) | 6, 293, 358, 379, 427, 802 |
| PdmI | GAANNNNTTC | 1 cut(s) | 281 |
| PfeI | GAWTC | 2 cut(s) | 171, 226 |
| PfoI | TCCNGGA | 1 cut(s) | 177 |
| PinAI | ACCGGT | 1 cut(s) | 141 |
| PkrI | GCNGC | 2 cut(s) | 100, 805 |
| Ple19I | CGATCG | 1 cut(s) | 459 |
| PleI | GAGTC | 3 cut(s) | 142, 601, 640 |
| PpsI | GAGTC | 3 cut(s) | 142, 601, 640 |
| Psp124BI | GAGCTC | 1 cut(s) | 783 |
| Psp1406I | AACGTT | 2 cut(s) | 279, 342 |
| Psp6I | CCWGG | 2 cut(s) | 177, 594 |
| PspEI | GGTNACC | 1 cut(s) | 686 |
| PspFI | CCCAGC | 1 cut(s) | 63 |
| PspGI | CCWGG | 2 cut(s) | 177, 594 |
| PspN4I | GGNNCC | 6 cut(s) | 6, 293, 358, 379, 427, 802 |
| PsuI | RGATCY | 5 cut(s) | 234, 356, 377, 404, 412 |
| PvuI | CGATCG | 1 cut(s) | 459 |
| RsaI | GTAC | 1 cut(s) | 550 |
| RsaNI | GTAC | 1 cut(s) | 549 |
| SacI | GAGCTC | 1 cut(s) | 783 |
| SaqAI | TTAA | 3 cut(s) | 204, 693, 811 |
| SatI | GCNGC | 2 cut(s) | 99, 804 |
| SchI | GAGTC | 3 cut(s) | 142, 601, 640 |
| ScrFI | CCNGG | 3 cut(s) | 103, 179, 596 |
| SduI | GDGCHC | 4 cut(s) | 202, 630, 669, 783 |
| SmlI | CTYRAG | 3 cut(s) | 302, 692, 776 |
| SmoI | CTYRAG | 3 cut(s) | 302, 692, 776 |
| Sse9I | AATT | 2 cut(s) | 333, 371 |
| SsiI | CCGC | 1 cut(s) | 804 |
| SstI | GAGCTC | 1 cut(s) | 783 |
| StyD4I | CCNGG | 3 cut(s) | 101, 177, 594 |
| StyI | CCWWGG | 2 cut(s) | 408, 682 |
| TaaI | ACNGT | 3 cut(s) | 632, 671, 758 |
| TaiI | ACGT | 3 cut(s) | 282, 345, 583 |
| TaqI | TCGA | 6 cut(s) | 267, 363, 455, 459, 603, 642 |
| TasI | AATT | 2 cut(s) | 333, 371 |
| TatI | WGTACW | 1 cut(s) | 548 |
| TauI | GCSGC | 1 cut(s) | 806 |
| TfiI | GAWTC | 2 cut(s) | 171, 226 |
| Tru1I | TTAA | 3 cut(s) | 204, 693, 811 |
| Tru9I | TTAA | 3 cut(s) | 204, 693, 811 |
| TscAI | CASTG | 2 cut(s) | 436, 763 |
| TseI | GCWGC | 1 cut(s) | 98 |
| TspDTI | ATGAA | 1 cut(s) | 559 |
| TspRI | CASTG | 2 cut(s) | 436, 763 |
| Vha464I | CTTAAG | 1 cut(s) | 692 |
| XapI | RAATTY | 2 cut(s) | 333, 371 |
| XmnI | GAANNNNTTC | 1 cut(s) | 281 |