Rmu_sc0004805.1_g000006

Homeodomain

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004805.1
Physical Location & Seq
Reverse (-)
41099 .. 41911
813 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004805.1_g000006.1.cds

Sequence Viewer

Length: 813 bp
atggaaccacgaactctgcaactaatggagcttcaaacccaacaacaaatggaactacaagcccagcaactcaccgaggagggaggaagcaaccaagcagccgggagtagtgccaacacgcctatcaggccaaccaataaccggtggactcccacaccagctcaactgagaatcctccaggagctttactacgacagggcacttaaaaacccaactccagagcagattcaagggatctgtctccatctgagaccctatgggcagatcgagaacaagaacgttttcttttggttccagaacctcaaggctcgtgagaggcagaagttgaaggaaattcggaacgttcgggttggtggatccctcgatctcaaatttggatccacaagttctactgatggtggcagatccatggatctcaactttggttccactggttctactggtgatgatggatcgatcgatctaaccattgggtcatgcgtcggctatggtgttgacccatattcctcctcacctttcaacgctaataccaatactacctatttttgtacaataggaggacaatcattcatggaacaacgtggaggagatcaccaggaggtcgagactcttcccttgttccctgagcacggtcaggaggtcgagactcttcccctgttccctgagcacggtgaagacatccttggtaaccttaagactacatccgaggaaggtagcgcatttggttactattctggtggctcaggctgttacaacagtggctcacctgtttctcttgagctcagcctcaatccattcggagccgcttattaa

Protein Analysis

270

Amino Acids

29.61

Weight (kDa)

4.79

Isoelectric Point (pI)

48.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000180)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr0c19g0499991 RchiOBHm_Chr0c19g0500021 RchiOBHm_Chr0c19g0500131 RchiOBHm_Chr0c31g0501321 RchiOBHm_Chr0c31g0501441 RchiOBHm_Chr1g0365611 RchiOBHm_Chr1g0366061 RchiOBHm_Chr1g0367951 RchiOBHm_Chr1g0369471 RchiOBHm_Chr1g0377271 RchiOBHm_Chr1g0379021 RchiOBHm_Chr1g0379461 RchiOBHm_Chr1g0381431 RchiOBHm_Chr1g0383551 RchiOBHm_Chr1g0383621 RchiOBHm_Chr2g0120951 RchiOBHm_Chr2g0121321 RchiOBHm_Chr2g0121381 RchiOBHm_Chr2g0121801 RchiOBHm_Chr2g0121861 RchiOBHm_Chr2g0122211 RchiOBHm_Chr2g0122471 RchiOBHm_Chr2g0122511 RchiOBHm_Chr2g0122751 RchiOBHm_Chr2g0123361 RchiOBHm_Chr2g0124071 RchiOBHm_Chr2g0124341 RchiOBHm_Chr2g0124361 RchiOBHm_Chr2g0124511 RchiOBHm_Chr2g0124641 RchiOBHm_Chr2g0125051 RchiOBHm_Chr2g0125111 RchiOBHm_Chr2g0125641 RchiOBHm_Chr2g0125871 RchiOBHm_Chr2g0125901 RchiOBHm_Chr2g0126011 RchiOBHm_Chr2g0126291 RchiOBHm_Chr2g0126341 RchiOBHm_Chr2g0126611 RchiOBHm_Chr2g0126671 RchiOBHm_Chr2g0126701 RchiOBHm_Chr2g0127021 RchiOBHm_Chr2g0127071 RchiOBHm_Chr2g0127361 RchiOBHm_Chr2g0127691 RchiOBHm_Chr2g0128041 RchiOBHm_Chr2g0128051 RchiOBHm_Chr2g0128061 RchiOBHm_Chr2g0128141 RchiOBHm_Chr2g0128171 RchiOBHm_Chr2g0128181 RchiOBHm_Chr2g0128551 RchiOBHm_Chr2g0128991 RchiOBHm_Chr2g0130061 RchiOBHm_Chr2g0130391 RchiOBHm_Chr2g0130631 RchiOBHm_Chr2g0130921 RchiOBHm_Chr2g0132731 RchiOBHm_Chr2g0133461 RchiOBHm_Chr2g0133921 RchiOBHm_Chr2g0134031 RchiOBHm_Chr2g0134281 RchiOBHm_Chr2g0134351 RchiOBHm_Chr2g0135501 RchiOBHm_Chr2g0135821 RchiOBHm_Chr2g0135931 RchiOBHm_Chr2g0137501 RchiOBHm_Chr2g0139141 RchiOBHm_Chr2g0139511 RchiOBHm_Chr2g0142411 RchiOBHm_Chr2g0143261 RchiOBHm_Chr2g0144171 RchiOBHm_Chr2g0144741 RchiOBHm_Chr2g0144841 RchiOBHm_Chr2g0145021 RchiOBHm_Chr2g0145831 RchiOBHm_Chr2g0145881 RchiOBHm_Chr2g0146081 RchiOBHm_Chr2g0146141 RchiOBHm_Chr2g0146671 RchiOBHm_Chr2g0149001 RchiOBHm_Chr2g0151811 RchiOBHm_Chr2g0151821 RchiOBHm_Chr2g0151831 RchiOBHm_Chr2g0152051 RchiOBHm_Chr2g0154791 RchiOBHm_Chr2g0155541 RchiOBHm_Chr2g0160791 RchiOBHm_Chr2g0161631 RchiOBHm_Chr2g0162151 RchiOBHm_Chr2g0162751 RchiOBHm_Chr2g0166561 RchiOBHm_Chr2g0166751 RchiOBHm_Chr2g0168891 RchiOBHm_Chr2g0170211 RchiOBHm_Chr2g0170781 RchiOBHm_Chr2g0172831 RchiOBHm_Chr2g0174791 RchiOBHm_Chr3g0448081 RchiOBHm_Chr3g0449761 RchiOBHm_Chr3g0453291 RchiOBHm_Chr3g0456271 RchiOBHm_Chr3g0456461 RchiOBHm_Chr3g0458351 RchiOBHm_Chr3g0461411 RchiOBHm_Chr3g0461511 RchiOBHm_Chr3g0463871 RchiOBHm_Chr3g0467841 RchiOBHm_Chr3g0470081 RchiOBHm_Chr3g0470571 RchiOBHm_Chr7g0187061 RchiOBHm_Chr7g0187461 RchiOBHm_Chr7g0187681 RchiOBHm_Chr7g0189901 RchiOBHm_Chr7g0190271 RchiOBHm_Chr7g0193451 RchiOBHm_Chr7g0194081 RchiOBHm_Chr7g0195771 RchiOBHm_Chr7g0196301 RchiOBHm_Chr7g0196911
rosa_multiflora Rmu_sc0000236.1_g000047 Rmu_sc0000284.1_g000007 Rmu_sc0000288.1_g000006 Rmu_sc0000507.1_g000017 Rmu_sc0000580.1_g000015 Rmu_sc0000663.1_g000011 Rmu_sc0000675.1_g000024 Rmu_sc0000693.1_g000072 Rmu_sc0000779.1_g000005 Rmu_sc0000851.1_g000015 Rmu_sc0000962.1_g000001 Rmu_sc0001493.1_g000055 Rmu_sc0001669.1_g000025 Rmu_sc0001891.1_g000051 Rmu_sc0001926.1_g000007 Rmu_sc0002082.1_g000025 Rmu_sc0002141.1_g000001 Rmu_sc0002141.1_g000004 Rmu_sc0002414.1_g000012 Rmu_sc0002557.1_g000022 Rmu_sc0002709.1_g000038 Rmu_sc0002897.1_g000004 Rmu_sc0002934.1_g000055 Rmu_sc0003692.1_g000017 Rmu_sc0004283.1_g000068 Rmu_sc0004598.1_g000010 Rmu_sc0004614.1_g000004 Rmu_sc0004805.1_g000006 Rmu_sc0005142.1_g000041 Rmu_sc0005777.1_g000001 Rmu_sc0006420.1_g000019 Rmu_sc0006803.1_g000016 Rmu_sc0007034.1_g000015 Rmu_sc0008079.1_g000017 Rmu_sc0008148.1_g000040 Rmu_sc0008608.1_g000007 Rmu_sc0008675.1_g000001 Rmu_sc0009663.1_g000001 Rmu_sc0010188.1_g000003 Rmu_sc0010739.1_g000005 Rmu_sc0016265.1_g000001 Rmu_sc0031757.1_g000001 Rmu_ssc0000087.1_g000024 Rmu_ssc0000438.1_g000029
rosa_roxburghii Rroxscaffold_1G00003350
rosa_rugosa Rorug03G0248400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 804
AclI AACGTT 2 cut(s) 279, 342
AclWI GGATC 8 cut(s) 242, 351, 364, 372, 385, 399, 420, 460
AcsI RAATTY 2 cut(s) 333, 371
AfaI GTAC 1 cut(s) 550
AfiI CCNNNNNNNGG 3 cut(s) 141, 629, 668
AflII CTTAAG 1 cut(s) 692
AgeI ACCGGT 1 cut(s) 141
AgsI TTSAA 4 cut(s) 35, 230, 328, 520
AjnI CCWGG 2 cut(s) 177, 594
AjuI GAANNNNNNNTTGG 2 cut(s) 666, 698
AluBI AGCT 4 cut(s) 31, 161, 184, 781
AluI AGCT 4 cut(s) 31, 161, 184, 781
Alw21I GWGCWC 3 cut(s) 630, 669, 783
Alw26I GTCTC 4 cut(s) 244, 245, 599, 638
AlwI GGATC 8 cut(s) 242, 351, 364, 372, 385, 399, 420, 460
AoxI GGCC 1 cut(s) 128
ApeKI GCWGC 1 cut(s) 98
ApoI RAATTY 2 cut(s) 333, 371
AsiGI ACCGGT 1 cut(s) 141
Asp700I GAANNNNTTC 1 cut(s) 281
AspLEI GCGC 1 cut(s) 719
AsuC2I CCSGG 1 cut(s) 103
AsuHPI GGTGA 6 cut(s) 64, 455, 504, 584, 683, 756
BaeGI GKGCMC 1 cut(s) 202
BamHI GGATCC 2 cut(s) 356, 377
BanII GRGCYC 1 cut(s) 783
BauI CACGAG 1 cut(s) 309
BbsI GAAGAC 1 cut(s) 681
Bbv12I GWGCWC 3 cut(s) 630, 669, 783
BbvI GCAGC 1 cut(s) 110
BccI CCATC 3 cut(s) 252, 389, 443
BciT130I CCWGG 2 cut(s) 179, 596
BcnI CCSGG 1 cut(s) 103
BcoDI GTCTC 4 cut(s) 244, 245, 599, 638
BfrI CTTAAG 1 cut(s) 692
BglI GCCNNNNNGGC 1 cut(s) 127
BisI GCNGC 2 cut(s) 99, 804
BlpI GCTNAGC 1 cut(s) 782
BlsI GCNGC 2 cut(s) 100, 805
Bme1390I CCNGG 3 cut(s) 103, 179, 596
BmiI GGNNCC 6 cut(s) 6, 293, 358, 379, 427, 802
BmrFI CCNGG 3 cut(s) 103, 179, 596
BpiI GAAGAC 1 cut(s) 681
BpmI CTGGAG 2 cut(s) 161, 201
Bpu10I CCTNAGC 3 cut(s) 624, 663, 742
Bpu1102I GCTNAGC 1 cut(s) 782
BpuEI CTTGAG 2 cut(s) 287, 797
BpuMI CCSGG 1 cut(s) 103
Bsa29I ATCGAT 2 cut(s) 455, 459
BsaI GGTCTC 1 cut(s) 244
BsaJI CCNNGG 4 cut(s) 75, 408, 682, 705
BsaWI WCCGGW 1 cut(s) 141
Bsc4I CCNNNNNNNGG 3 cut(s) 141, 629, 668
Bse118I RCCGGY 1 cut(s) 141
Bse1I ACTGG 2 cut(s) 436, 445
BseBI CCWGG 2 cut(s) 179, 596
BseCI ATCGAT 2 cut(s) 455, 459
BseDI CCNNGG 4 cut(s) 75, 408, 682, 705
BseGI GGATG 2 cut(s) 678, 701
BseLI CCNNNNNNNGG 3 cut(s) 141, 629, 668
BseMII CTCAG 6 cut(s) 158, 239, 615, 654, 756, 796
BseNI ACTGG 2 cut(s) 436, 445
BseRI GAGGAG 3 cut(s) 92, 499, 600
BseSI GKGCMC 1 cut(s) 202
BseXI GCAGC 1 cut(s) 110
BseYI CCCAGC 1 cut(s) 63
Bsh1285I CGRYCG 1 cut(s) 459
BshFI GGCC 1 cut(s) 130
BshTI ACCGGT 1 cut(s) 141
BshVI ATCGAT 2 cut(s) 455, 459
BsiEI CGRYCG 1 cut(s) 459
BsiHKAI GWGCWC 3 cut(s) 630, 669, 783
BsiSI CCGG 2 cut(s) 102, 142
BslI CCNNNNNNNGG 3 cut(s) 141, 629, 668
BsmAI GTCTC 4 cut(s) 244, 245, 599, 638
BsnI GGCC 1 cut(s) 130
Bso31I GGTCTC 1 cut(s) 244
Bsp1286I GDGCHC 4 cut(s) 202, 630, 669, 783
Bsp1407I TGTACA 1 cut(s) 548
Bsp1720I GCTNAGC 1 cut(s) 782
Bsp19I CCATGG 1 cut(s) 408
BspACI CCGC 1 cut(s) 804
BspANI GGCC 1 cut(s) 130
BspCNI CTCAG 6 cut(s) 159, 240, 616, 655, 755, 795
BspDI ATCGAT 2 cut(s) 455, 459
BspLI GGNNCC 6 cut(s) 6, 293, 358, 379, 427, 802
BspPI GGATC 8 cut(s) 242, 351, 364, 372, 385, 399, 420, 460
BspTI CTTAAG 1 cut(s) 692
BspTNI GGTCTC 1 cut(s) 244
BsrFI RCCGGY 1 cut(s) 141
BsrGI TGTACA 1 cut(s) 548
BsrI ACTGG 2 cut(s) 436, 445
BssAI RCCGGY 1 cut(s) 141
BssECI CCNNGG 4 cut(s) 75, 408, 682, 705
BssSI CACGAG 1 cut(s) 309
BssT1I CCWWGG 2 cut(s) 408, 682
Bst2BI CACGAG 1 cut(s) 309
Bst2UI CCWGG 2 cut(s) 179, 596
Bst4CI ACNGT 3 cut(s) 632, 671, 758
Bst6I CTCTTC 2 cut(s) 615, 654
BstAFI CTTAAG 1 cut(s) 692
BstAUI TGTACA 1 cut(s) 548
BstDEI CTNAG 6 cut(s) 167, 248, 624, 663, 742, 782
BstDSI CCRYGG 1 cut(s) 408
BstEII GGTNACC 1 cut(s) 686
BstF5I GGATG 2 cut(s) 678, 701
BstHHI GCGC 1 cut(s) 719
BstMAI GTCTC 4 cut(s) 244, 245, 599, 638
BstMCI CGRYCG 1 cut(s) 459
BstMWI GCNNNNNNNGC 1 cut(s) 127
BstNI CCWGG 2 cut(s) 179, 596
BstPI GGTNACC 1 cut(s) 686
BstSCI CCNGG 3 cut(s) 101, 177, 594
BstSLI GKGCMC 1 cut(s) 202
BstV1I GCAGC 1 cut(s) 110
BstV2I GAAGAC 1 cut(s) 681
BstX2I RGATCY 5 cut(s) 234, 356, 377, 404, 412
BstYI RGATCY 5 cut(s) 234, 356, 377, 404, 412
Bsu15I ATCGAT 2 cut(s) 455, 459
BsuRI GGCC 1 cut(s) 130
BsuTUI ATCGAT 2 cut(s) 455, 459
BtgI CCRYGG 1 cut(s) 408
BtsCI GGATG 2 cut(s) 678, 701
BtsIMutI CAGTG 2 cut(s) 429, 763
CfoI GCGC 1 cut(s) 719
Cfr10I RCCGGY 1 cut(s) 141
ClaI ATCGAT 2 cut(s) 455, 459
CseI GACGC 1 cut(s) 469
Csp6I GTAC 1 cut(s) 549
CspAI ACCGGT 1 cut(s) 141
CviAII CATG 3 cut(s) 409, 477, 571
CviQI GTAC 1 cut(s) 549
DdeI CTNAG 6 cut(s) 167, 248, 624, 663, 742, 782
Eam1104I CTCTTC 2 cut(s) 615, 654
EarI CTCTTC 2 cut(s) 615, 654
Ecl136II GAGCTC 1 cut(s) 781
Eco130I CCWWGG 2 cut(s) 408, 682
Eco24I GRGCYC 1 cut(s) 783
Eco31I GGTCTC 1 cut(s) 244
Eco53kI GAGCTC 1 cut(s) 781
Eco91I GGTNACC 1 cut(s) 686
EcoICRI GAGCTC 1 cut(s) 781
EcoO65I GGTNACC 1 cut(s) 686
EcoRII CCWGG 2 cut(s) 177, 594
EcoT14I CCWWGG 2 cut(s) 408, 682
EcoT38I GRGCYC 1 cut(s) 783
ErhI CCWWGG 2 cut(s) 408, 682
FaeI CATG 3 cut(s) 412, 480, 574
FaiI YATR 6 cut(s) 258, 410, 478, 489, 502, 572
FalI AAGNNNNNCTT 2 cut(s) 666, 698
FatI CATG 3 cut(s) 408, 476, 570
Fnu4HI GCNGC 2 cut(s) 99, 804
FokI GGATG 2 cut(s) 665, 688
FriOI GRGCYC 1 cut(s) 783
Fsp4HI GCNGC 2 cut(s) 99, 804
GlaI GCGC 1 cut(s) 718
GluI GCNGC 2 cut(s) 99, 804
GsaI CCCAGC 1 cut(s) 67
GsuI CTGGAG 2 cut(s) 161, 201
HaeIII GGCC 1 cut(s) 130
HapII CCGG 2 cut(s) 102, 142
HgaI GACGC 1 cut(s) 469
HhaI GCGC 1 cut(s) 719
Hin1II CATG 3 cut(s) 412, 480, 574
Hin6I GCGC 1 cut(s) 717
HinP1I GCGC 1 cut(s) 717
HincII GTYRAC 1 cut(s) 496
HindII GTYRAC 1 cut(s) 496
HinfI GANTC 5 cut(s) 148, 171, 226, 607, 646
HpaII CCGG 2 cut(s) 102, 142
HphI GGTGA 6 cut(s) 64, 455, 504, 584, 683, 756
Hpy166II GTNNAC 2 cut(s) 147, 496
Hpy188I TCNGA 4 cut(s) 249, 339, 706, 800
Hpy188III TCNNGA 8 cut(s) 218, 268, 295, 311, 604, 635, 643, 776
Hpy8I GTNNAC 2 cut(s) 147, 496
Hpy99I CGWCG 1 cut(s) 485
HpyAV CCTTC 2 cut(s) 322, 704
HpyCH4III ACNGT 3 cut(s) 632, 671, 758
HpyCH4IV ACGT 3 cut(s) 279, 342, 580
HpyCH4V TGCA 1 cut(s) 19
HpyF10VI GCNNNNNNNGC 1 cut(s) 127
HpyF3I CTNAG 6 cut(s) 167, 248, 624, 663, 742, 782
HpySE526I ACGT 3 cut(s) 279, 342, 580
Hsp92II CATG 3 cut(s) 412, 480, 574
HspAI GCGC 1 cut(s) 717
LmnI GCTCC 3 cut(s) 28, 181, 800
Lsp1109I GCAGC 1 cut(s) 110
MaeII ACGT 3 cut(s) 279, 342, 580
MaeIII GTNAC 3 cut(s) 686, 725, 749
MboII GAAGA 3 cut(s) 602, 641, 686
MflI RGATCY 5 cut(s) 234, 356, 377, 404, 412
MhlI GDGCHC 4 cut(s) 202, 630, 669, 783
MluCI AATT 2 cut(s) 333, 371
MlyI GAGTC 3 cut(s) 142, 601, 640
MroXI GAANNNNTTC 1 cut(s) 281
MseI TTAA 3 cut(s) 204, 693, 811
MspCI CTTAAG 1 cut(s) 692
MspI CCGG 2 cut(s) 102, 142
MspR9I CCNGG 3 cut(s) 103, 179, 596
MvaI CCWGG 2 cut(s) 179, 596
MwoI GCNNNNNNNGC 1 cut(s) 127
NciI CCSGG 1 cut(s) 103
NcoI CCATGG 1 cut(s) 408
NlaIII CATG 3 cut(s) 412, 480, 574
NlaIV GGNNCC 6 cut(s) 6, 293, 358, 379, 427, 802
PdmI GAANNNNTTC 1 cut(s) 281
PfeI GAWTC 2 cut(s) 171, 226
PfoI TCCNGGA 1 cut(s) 177
PinAI ACCGGT 1 cut(s) 141
PkrI GCNGC 2 cut(s) 100, 805
Ple19I CGATCG 1 cut(s) 459
PleI GAGTC 3 cut(s) 142, 601, 640
PpsI GAGTC 3 cut(s) 142, 601, 640
Psp124BI GAGCTC 1 cut(s) 783
Psp1406I AACGTT 2 cut(s) 279, 342
Psp6I CCWGG 2 cut(s) 177, 594
PspEI GGTNACC 1 cut(s) 686
PspFI CCCAGC 1 cut(s) 63
PspGI CCWGG 2 cut(s) 177, 594
PspN4I GGNNCC 6 cut(s) 6, 293, 358, 379, 427, 802
PsuI RGATCY 5 cut(s) 234, 356, 377, 404, 412
PvuI CGATCG 1 cut(s) 459
RsaI GTAC 1 cut(s) 550
RsaNI GTAC 1 cut(s) 549
SacI GAGCTC 1 cut(s) 783
SaqAI TTAA 3 cut(s) 204, 693, 811
SatI GCNGC 2 cut(s) 99, 804
SchI GAGTC 3 cut(s) 142, 601, 640
ScrFI CCNGG 3 cut(s) 103, 179, 596
SduI GDGCHC 4 cut(s) 202, 630, 669, 783
SmlI CTYRAG 3 cut(s) 302, 692, 776
SmoI CTYRAG 3 cut(s) 302, 692, 776
Sse9I AATT 2 cut(s) 333, 371
SsiI CCGC 1 cut(s) 804
SstI GAGCTC 1 cut(s) 783
StyD4I CCNGG 3 cut(s) 101, 177, 594
StyI CCWWGG 2 cut(s) 408, 682
TaaI ACNGT 3 cut(s) 632, 671, 758
TaiI ACGT 3 cut(s) 282, 345, 583
TaqI TCGA 6 cut(s) 267, 363, 455, 459, 603, 642
TasI AATT 2 cut(s) 333, 371
TatI WGTACW 1 cut(s) 548
TauI GCSGC 1 cut(s) 806
TfiI GAWTC 2 cut(s) 171, 226
Tru1I TTAA 3 cut(s) 204, 693, 811
Tru9I TTAA 3 cut(s) 204, 693, 811
TscAI CASTG 2 cut(s) 436, 763
TseI GCWGC 1 cut(s) 98
TspDTI ATGAA 1 cut(s) 559
TspRI CASTG 2 cut(s) 436, 763
Vha464I CTTAAG 1 cut(s) 692
XapI RAATTY 2 cut(s) 333, 371
XmnI GAANNNNTTC 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.