Homeodomain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 254 |
| AciI | CCGC | 4 cut(s) | 592, 642, 645, 794 |
| AclI | AACGTT | 1 cut(s) | 318 |
| AclWI | GGATC | 8 cut(s) | 183, 340, 348, 361, 436, 825, 830, 843 |
| AcsI | RAATTY | 2 cut(s) | 308, 442 |
| AfaI | GTAC | 1 cut(s) | 421 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 117, 730 |
| AgeI | ACCGGT | 1 cut(s) | 117 |
| AgsI | TTSAA | 3 cut(s) | 206, 496, 742 |
| AjnI | CCWGG | 2 cut(s) | 153, 570 |
| AluBI | AGCT | 8 cut(s) | 31, 137, 160, 604, 702, 781, 803, 852 |
| AluI | AGCT | 8 cut(s) | 31, 137, 160, 604, 702, 781, 803, 852 |
| Alw21I | GWGCWC | 2 cut(s) | 162, 805 |
| Alw26I | GTCTC | 2 cut(s) | 647, 789 |
| AlwI | GGATC | 8 cut(s) | 183, 340, 348, 361, 436, 825, 830, 843 |
| Ama87I | CYCGRG | 2 cut(s) | 697, 847 |
| AoxI | GGCC | 1 cut(s) | 104 |
| ApoI | RAATTY | 2 cut(s) | 308, 442 |
| AsiGI | ACCGGT | 1 cut(s) | 117 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 257 |
| AspS9I | GGNCC | 1 cut(s) | 381 |
| AsuC2I | CCSGG | 1 cut(s) | 658 |
| AsuHPI | GGTGA | 2 cut(s) | 480, 560 |
| AvaI | CYCGRG | 2 cut(s) | 697, 847 |
| AvaII | GGWCC | 1 cut(s) | 381 |
| BamHI | GGATCC | 2 cut(s) | 353, 835 |
| BanII | GRGCYC | 2 cut(s) | 162, 805 |
| BauI | CACGAG | 1 cut(s) | 285 |
| BbsI | GAAGAC | 2 cut(s) | 209, 250 |
| Bbv12I | GWGCWC | 2 cut(s) | 162, 805 |
| BccI | CCATC | 5 cut(s) | 50, 368, 419, 675, 753 |
| BceAI | ACGGC | 1 cut(s) | 643 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 68, 102 |
| BciT130I | CCWGG | 2 cut(s) | 155, 572 |
| BcnI | CCSGG | 1 cut(s) | 658 |
| BcoDI | GTCTC | 2 cut(s) | 647, 789 |
| BfaI | CTAG | 1 cut(s) | 143 |
| BfmI | CTRYAG | 1 cut(s) | 853 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 103 |
| BglII | AGATCT | 1 cut(s) | 210 |
| BisI | GCNGC | 3 cut(s) | 643, 646, 795 |
| BlsI | GCNGC | 3 cut(s) | 644, 647, 796 |
| Bme1390I | CCNGG | 3 cut(s) | 155, 572, 658 |
| Bme18I | GGWCC | 1 cut(s) | 381 |
| BmeT110I | CYCGRG | 2 cut(s) | 697, 847 |
| BmgT120I | GGNCC | 1 cut(s) | 381 |
| BmiI | GGNNCC | 5 cut(s) | 6, 269, 355, 403, 837 |
| BmrFI | CCNGG | 3 cut(s) | 155, 572, 658 |
| BpiI | GAAGAC | 2 cut(s) | 209, 250 |
| BpmI | CTGGAG | 4 cut(s) | 137, 177, 809, 819 |
| BpuEI | CTTGAG | 1 cut(s) | 263 |
| BpuMI | CCSGG | 1 cut(s) | 658 |
| Bsa29I | ATCGAT | 1 cut(s) | 811 |
| BsaI | GGTCTC | 1 cut(s) | 647 |
| BsaWI | WCCGGW | 1 cut(s) | 117 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 767, 797 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 117, 730 |
| Bse118I | RCCGGY | 1 cut(s) | 117 |
| Bse1I | ACTGG | 2 cut(s) | 412, 421 |
| BseBI | CCWGG | 2 cut(s) | 155, 572 |
| BseCI | ATCGAT | 1 cut(s) | 811 |
| BseGI | GGATG | 2 cut(s) | 61, 667 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 117, 730 |
| BseNI | ACTGG | 2 cut(s) | 412, 421 |
| BseRI | GAGGAG | 4 cut(s) | 475, 573, 576, 791 |
| BseYI | CCCAGC | 1 cut(s) | 39 |
| Bsh1285I | CGRYCG | 1 cut(s) | 815 |
| BshFI | GGCC | 1 cut(s) | 106 |
| BshTI | ACCGGT | 1 cut(s) | 117 |
| BshVI | ATCGAT | 1 cut(s) | 811 |
| BsiEI | CGRYCG | 1 cut(s) | 815 |
| BsiHKAI | GWGCWC | 2 cut(s) | 162, 805 |
| BsiHKCI | CYCGRG | 2 cut(s) | 697, 847 |
| BsiSI | CCGG | 3 cut(s) | 118, 636, 657 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 117, 730 |
| BsmAI | GTCTC | 2 cut(s) | 647, 789 |
| BsnI | GGCC | 1 cut(s) | 106 |
| Bso31I | GGTCTC | 1 cut(s) | 647 |
| BsoBI | CYCGRG | 2 cut(s) | 697, 847 |
| Bsp1286I | GDGCHC | 2 cut(s) | 162, 805 |
| BspACI | CCGC | 4 cut(s) | 592, 642, 645, 794 |
| BspANI | GGCC | 1 cut(s) | 106 |
| BspDI | ATCGAT | 1 cut(s) | 811 |
| BspLI | GGNNCC | 5 cut(s) | 6, 269, 355, 403, 837 |
| BspPI | GGATC | 8 cut(s) | 183, 340, 348, 361, 436, 825, 830, 843 |
| BspTNI | GGTCTC | 1 cut(s) | 647 |
| BsrFI | RCCGGY | 1 cut(s) | 117 |
| BsrI | ACTGG | 2 cut(s) | 412, 421 |
| BssAI | RCCGGY | 1 cut(s) | 117 |
| BssSI | CACGAG | 1 cut(s) | 285 |
| Bst2BI | CACGAG | 1 cut(s) | 285 |
| Bst2UI | CCWGG | 2 cut(s) | 155, 572 |
| Bst6I | CTCTTC | 1 cut(s) | 645 |
| BstF5I | GGATG | 2 cut(s) | 61, 667 |
| BstMAI | GTCTC | 2 cut(s) | 647, 789 |
| BstMCI | CGRYCG | 1 cut(s) | 815 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 103, 800 |
| BstNI | CCWGG | 2 cut(s) | 155, 572 |
| BstSCI | CCNGG | 3 cut(s) | 153, 570, 656 |
| BstSFI | CTRYAG | 1 cut(s) | 853 |
| BstV2I | GAAGAC | 2 cut(s) | 209, 250 |
| BstX2I | RGATCY | 5 cut(s) | 175, 210, 332, 353, 835 |
| BstYI | RGATCY | 5 cut(s) | 175, 210, 332, 353, 835 |
| Bsu15I | ATCGAT | 1 cut(s) | 811 |
| BsuRI | GGCC | 1 cut(s) | 106 |
| BsuTUI | ATCGAT | 1 cut(s) | 811 |
| BtsCI | GGATG | 2 cut(s) | 61, 667 |
| BtsIMutI | CAGTG | 1 cut(s) | 405 |
| Cfr10I | RCCGGY | 1 cut(s) | 117 |
| Cfr13I | GGNCC | 1 cut(s) | 381 |
| ClaI | ATCGAT | 1 cut(s) | 811 |
| CseI | GACGC | 1 cut(s) | 445 |
| Csp6I | GTAC | 1 cut(s) | 420 |
| CspAI | ACCGGT | 1 cut(s) | 117 |
| CviAII | CATG | 3 cut(s) | 453, 547, 689 |
| CviQI | GTAC | 1 cut(s) | 420 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 254 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 254 |
| Eam1104I | CTCTTC | 1 cut(s) | 645 |
| EarI | CTCTTC | 1 cut(s) | 645 |
| Ecl136II | GAGCTC | 2 cut(s) | 160, 803 |
| Eco24I | GRGCYC | 2 cut(s) | 162, 805 |
| Eco31I | GGTCTC | 1 cut(s) | 647 |
| Eco47I | GGWCC | 1 cut(s) | 381 |
| Eco53kI | GAGCTC | 2 cut(s) | 160, 803 |
| Eco88I | CYCGRG | 2 cut(s) | 697, 847 |
| EcoICRI | GAGCTC | 2 cut(s) | 160, 803 |
| EcoRII | CCWGG | 2 cut(s) | 153, 570 |
| EcoT38I | GRGCYC | 2 cut(s) | 162, 805 |
| FaeI | CATG | 3 cut(s) | 456, 550, 692 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 242, 274 |
| FatI | CATG | 3 cut(s) | 452, 546, 688 |
| FauI | CCCGC | 1 cut(s) | 599 |
| FauNDI | CATATG | 1 cut(s) | 232 |
| Fnu4HI | GCNGC | 3 cut(s) | 643, 646, 795 |
| FokI | GGATG | 2 cut(s) | 68, 654 |
| FriOI | GRGCYC | 2 cut(s) | 162, 805 |
| Fsp4HI | GCNGC | 3 cut(s) | 643, 646, 795 |
| FspBI | CTAG | 1 cut(s) | 143 |
| GluI | GCNGC | 3 cut(s) | 643, 646, 795 |
| GsaI | CCCAGC | 1 cut(s) | 43 |
| GsuI | CTGGAG | 4 cut(s) | 137, 177, 809, 819 |
| HaeIII | GGCC | 1 cut(s) | 106 |
| HapII | CCGG | 3 cut(s) | 118, 636, 657 |
| HgaI | GACGC | 1 cut(s) | 445 |
| Hin1II | CATG | 3 cut(s) | 456, 550, 692 |
| HincII | GTYRAC | 1 cut(s) | 472 |
| HindII | GTYRAC | 1 cut(s) | 472 |
| HinfI | GANTC | 4 cut(s) | 124, 147, 202, 874 |
| HpaII | CCGG | 3 cut(s) | 118, 636, 657 |
| HphI | GGTGA | 2 cut(s) | 480, 560 |
| Hpy166II | GTNNAC | 2 cut(s) | 123, 472 |
| Hpy188I | TCNGA | 4 cut(s) | 225, 315, 750, 817 |
| Hpy188III | TCNNGA | 7 cut(s) | 194, 206, 271, 287, 338, 788, 847 |
| Hpy8I | GTNNAC | 2 cut(s) | 123, 472 |
| Hpy99I | CGWCG | 2 cut(s) | 461, 616 |
| HpyAV | CCTTC | 2 cut(s) | 502, 722 |
| HpyCH4IV | ACGT | 3 cut(s) | 255, 318, 614 |
| HpyCH4V | TGCA | 1 cut(s) | 771 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 103, 800 |
| HpySE526I | ACGT | 3 cut(s) | 255, 318, 614 |
| Hsp92II | CATG | 3 cut(s) | 456, 550, 692 |
| LmnI | GCTCC | 5 cut(s) | 28, 157, 778, 800, 827 |
| MaeI | CTAG | 1 cut(s) | 143 |
| MaeII | ACGT | 3 cut(s) | 255, 318, 614 |
| MaeIII | GTNAC | 2 cut(s) | 623, 692 |
| MboII | GAAGA | 3 cut(s) | 209, 250, 662 |
| MfeI | CAATTG | 1 cut(s) | 432 |
| MflI | RGATCY | 5 cut(s) | 175, 210, 332, 353, 835 |
| MhlI | GDGCHC | 2 cut(s) | 162, 805 |
| MluCI | AATT | 4 cut(s) | 308, 346, 432, 442 |
| MlyI | GAGTC | 1 cut(s) | 118 |
| MroXI | GAANNNNTTC | 1 cut(s) | 257 |
| MspI | CCGG | 3 cut(s) | 118, 636, 657 |
| MspR9I | CCNGG | 3 cut(s) | 155, 572, 658 |
| MunI | CAATTG | 1 cut(s) | 432 |
| MvaI | CCWGG | 2 cut(s) | 155, 572 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 103, 800 |
| NciI | CCSGG | 1 cut(s) | 658 |
| NdeI | CATATG | 1 cut(s) | 232 |
| NlaIII | CATG | 3 cut(s) | 456, 550, 692 |
| NlaIV | GGNNCC | 5 cut(s) | 6, 269, 355, 403, 837 |
| NmeAIII | GCCGAG | 1 cut(s) | 103 |
| PaeR7I | CTCGAG | 2 cut(s) | 697, 847 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 817 |
| PdmI | GAANNNNTTC | 1 cut(s) | 257 |
| PfeI | GAWTC | 3 cut(s) | 147, 202, 874 |
| PfoI | TCCNGGA | 1 cut(s) | 153 |
| PinAI | ACCGGT | 1 cut(s) | 117 |
| PkrI | GCNGC | 3 cut(s) | 644, 647, 796 |
| Ple19I | CGATCG | 1 cut(s) | 815 |
| PleI | GAGTC | 1 cut(s) | 118 |
| PpsI | GAGTC | 1 cut(s) | 118 |
| Psp124BI | GAGCTC | 2 cut(s) | 162, 805 |
| Psp1406I | AACGTT | 1 cut(s) | 318 |
| Psp6I | CCWGG | 2 cut(s) | 153, 570 |
| PspFI | CCCAGC | 1 cut(s) | 39 |
| PspGI | CCWGG | 2 cut(s) | 153, 570 |
| PspN4I | GGNNCC | 5 cut(s) | 6, 269, 355, 403, 837 |
| PspPI | GGNCC | 1 cut(s) | 381 |
| PspXI | VCTCGAGB | 1 cut(s) | 697 |
| PsuI | RGATCY | 5 cut(s) | 175, 210, 332, 353, 835 |
| PvuI | CGATCG | 1 cut(s) | 815 |
| RsaI | GTAC | 1 cut(s) | 421 |
| RsaNI | GTAC | 1 cut(s) | 420 |
| SacI | GAGCTC | 2 cut(s) | 162, 805 |
| SatI | GCNGC | 3 cut(s) | 643, 646, 795 |
| Sau96I | GGNCC | 1 cut(s) | 381 |
| SchI | GAGTC | 1 cut(s) | 118 |
| ScrFI | CCNGG | 3 cut(s) | 155, 572, 658 |
| SduI | GDGCHC | 2 cut(s) | 162, 805 |
| SfcI | CTRYAG | 1 cut(s) | 853 |
| Sfr274I | CTCGAG | 2 cut(s) | 697, 847 |
| SinI | GGWCC | 1 cut(s) | 381 |
| SlaI | CTCGAG | 2 cut(s) | 697, 847 |
| SmlI | CTYRAG | 3 cut(s) | 278, 697, 847 |
| SmoI | CTYRAG | 3 cut(s) | 278, 697, 847 |
| Sse9I | AATT | 4 cut(s) | 308, 346, 432, 442 |
| SsiI | CCGC | 4 cut(s) | 592, 642, 645, 794 |
| SspMI | CTAG | 1 cut(s) | 143 |
| SstI | GAGCTC | 2 cut(s) | 162, 805 |
| StyD4I | CCNGG | 3 cut(s) | 153, 570, 656 |
| TaiI | ACGT | 3 cut(s) | 258, 321, 617 |
| TaqI | TCGA | 8 cut(s) | 51, 243, 339, 579, 698, 811, 820, 848 |
| TasI | AATT | 4 cut(s) | 308, 346, 432, 442 |
| TauI | GCSGC | 3 cut(s) | 645, 648, 797 |
| TfiI | GAWTC | 3 cut(s) | 147, 202, 874 |
| TscAI | CASTG | 1 cut(s) | 412 |
| TspDTI | ATGAA | 2 cut(s) | 209, 535 |
| TspGWI | ACGGA | 2 cut(s) | 788, 840 |
| TspRI | CASTG | 1 cut(s) | 412 |
| VpaK11BI | GGWCC | 1 cut(s) | 381 |
| XapI | RAATTY | 2 cut(s) | 308, 442 |
| XhoI | CTCGAG | 2 cut(s) | 697, 847 |
| XmnI | GAANNNNTTC | 1 cut(s) | 257 |
| XspI | CTAG | 1 cut(s) | 143 |