Rmu_sc0000663.1_g000011

Homeodomain

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000663.1
Physical Location & Seq
Forward (+)
43587 .. 44758
1172 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000663.1_g000011.1.cds

Sequence Viewer

Length: 900 bp
atggaaccacgaactctacaactaatggagctacaaacccagcaacaagtcgaggatggaggaaacaaccaagtagccgagagtagtgccaacacgcctatcaggccgaccactaaccggtggactcccacaccagctcaactaggaatcctccaggagctctactatgacaaggatctcaactacccaactccagagcagattcaagagatctgtcttcatctgaaaccatatgggcagatcgaggacaagaacgtcttcttttggttccagaacctcaaggctcgtgagaggcagaagttgagggaatttcggaacgttcgggttggtggatctctcgatctcaattttggatccacaagttctactgatgatggtaggtccattgatctcaactttggttccactggttctactggtactgatggatcaattgatctaaattttgggtcatgcgtcggctatggtgttgacccatattcctcctcacccttcaacactaatacccatactacctcttttggcacaacaggaggacaatctttcatggaacaacgaggaggagatcaccaggaggtcgaatgtaatacccgccttgcgaagctacctacgacgttcttgggtaacggcacagccggaagcggcggcgaagagaccgggttcgtccatccccgttttagttccaagcatggtaactcgagctaccgaaaccttctcaaactccattcacaggttcgtttcaaccatctgaaactcccagaagcaccttgcacggaggagctgtctctggaggcggctggagctcaacatcgatcggatcgaaacggagcaaaggatccaaatatctcgagctacagaccaccattttttatgattcttggcttgatgaactcgccttga

Protein Analysis

299

Amino Acids

33.11

Weight (kDa)

5.77

Isoelectric Point (pI)

41.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000180)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr0c19g0499991 RchiOBHm_Chr0c19g0500021 RchiOBHm_Chr0c19g0500131 RchiOBHm_Chr0c31g0501321 RchiOBHm_Chr0c31g0501441 RchiOBHm_Chr1g0365611 RchiOBHm_Chr1g0366061 RchiOBHm_Chr1g0367951 RchiOBHm_Chr1g0369471 RchiOBHm_Chr1g0377271 RchiOBHm_Chr1g0379021 RchiOBHm_Chr1g0379461 RchiOBHm_Chr1g0381431 RchiOBHm_Chr1g0383551 RchiOBHm_Chr1g0383621 RchiOBHm_Chr2g0120951 RchiOBHm_Chr2g0121321 RchiOBHm_Chr2g0121381 RchiOBHm_Chr2g0121801 RchiOBHm_Chr2g0121861 RchiOBHm_Chr2g0122211 RchiOBHm_Chr2g0122471 RchiOBHm_Chr2g0122511 RchiOBHm_Chr2g0122751 RchiOBHm_Chr2g0123361 RchiOBHm_Chr2g0124071 RchiOBHm_Chr2g0124341 RchiOBHm_Chr2g0124361 RchiOBHm_Chr2g0124511 RchiOBHm_Chr2g0124641 RchiOBHm_Chr2g0125051 RchiOBHm_Chr2g0125111 RchiOBHm_Chr2g0125641 RchiOBHm_Chr2g0125871 RchiOBHm_Chr2g0125901 RchiOBHm_Chr2g0126011 RchiOBHm_Chr2g0126291 RchiOBHm_Chr2g0126341 RchiOBHm_Chr2g0126611 RchiOBHm_Chr2g0126671 RchiOBHm_Chr2g0126701 RchiOBHm_Chr2g0127021 RchiOBHm_Chr2g0127071 RchiOBHm_Chr2g0127361 RchiOBHm_Chr2g0127691 RchiOBHm_Chr2g0128041 RchiOBHm_Chr2g0128051 RchiOBHm_Chr2g0128061 RchiOBHm_Chr2g0128141 RchiOBHm_Chr2g0128171 RchiOBHm_Chr2g0128181 RchiOBHm_Chr2g0128551 RchiOBHm_Chr2g0128991 RchiOBHm_Chr2g0130061 RchiOBHm_Chr2g0130391 RchiOBHm_Chr2g0130631 RchiOBHm_Chr2g0130921 RchiOBHm_Chr2g0132731 RchiOBHm_Chr2g0133461 RchiOBHm_Chr2g0133921 RchiOBHm_Chr2g0134031 RchiOBHm_Chr2g0134281 RchiOBHm_Chr2g0134351 RchiOBHm_Chr2g0135501 RchiOBHm_Chr2g0135821 RchiOBHm_Chr2g0135931 RchiOBHm_Chr2g0137501 RchiOBHm_Chr2g0139141 RchiOBHm_Chr2g0139511 RchiOBHm_Chr2g0142411 RchiOBHm_Chr2g0143261 RchiOBHm_Chr2g0144171 RchiOBHm_Chr2g0144741 RchiOBHm_Chr2g0144841 RchiOBHm_Chr2g0145021 RchiOBHm_Chr2g0145831 RchiOBHm_Chr2g0145881 RchiOBHm_Chr2g0146081 RchiOBHm_Chr2g0146141 RchiOBHm_Chr2g0146671 RchiOBHm_Chr2g0149001 RchiOBHm_Chr2g0151811 RchiOBHm_Chr2g0151821 RchiOBHm_Chr2g0151831 RchiOBHm_Chr2g0152051 RchiOBHm_Chr2g0154791 RchiOBHm_Chr2g0155541 RchiOBHm_Chr2g0160791 RchiOBHm_Chr2g0161631 RchiOBHm_Chr2g0162151 RchiOBHm_Chr2g0162751 RchiOBHm_Chr2g0166561 RchiOBHm_Chr2g0166751 RchiOBHm_Chr2g0168891 RchiOBHm_Chr2g0170211 RchiOBHm_Chr2g0170781 RchiOBHm_Chr2g0172831 RchiOBHm_Chr2g0174791 RchiOBHm_Chr3g0448081 RchiOBHm_Chr3g0449761 RchiOBHm_Chr3g0453291 RchiOBHm_Chr3g0456271 RchiOBHm_Chr3g0456461 RchiOBHm_Chr3g0458351 RchiOBHm_Chr3g0461411 RchiOBHm_Chr3g0461511 RchiOBHm_Chr3g0463871 RchiOBHm_Chr3g0467841 RchiOBHm_Chr3g0470081 RchiOBHm_Chr3g0470571 RchiOBHm_Chr7g0187061 RchiOBHm_Chr7g0187461 RchiOBHm_Chr7g0187681 RchiOBHm_Chr7g0189901 RchiOBHm_Chr7g0190271 RchiOBHm_Chr7g0193451 RchiOBHm_Chr7g0194081 RchiOBHm_Chr7g0195771 RchiOBHm_Chr7g0196301 RchiOBHm_Chr7g0196911
rosa_multiflora Rmu_sc0000236.1_g000047 Rmu_sc0000284.1_g000007 Rmu_sc0000288.1_g000006 Rmu_sc0000507.1_g000017 Rmu_sc0000580.1_g000015 Rmu_sc0000663.1_g000011 Rmu_sc0000675.1_g000024 Rmu_sc0000693.1_g000072 Rmu_sc0000779.1_g000005 Rmu_sc0000851.1_g000015 Rmu_sc0000962.1_g000001 Rmu_sc0001493.1_g000055 Rmu_sc0001669.1_g000025 Rmu_sc0001891.1_g000051 Rmu_sc0001926.1_g000007 Rmu_sc0002082.1_g000025 Rmu_sc0002141.1_g000001 Rmu_sc0002141.1_g000004 Rmu_sc0002414.1_g000012 Rmu_sc0002557.1_g000022 Rmu_sc0002709.1_g000038 Rmu_sc0002897.1_g000004 Rmu_sc0002934.1_g000055 Rmu_sc0003692.1_g000017 Rmu_sc0004283.1_g000068 Rmu_sc0004598.1_g000010 Rmu_sc0004614.1_g000004 Rmu_sc0004805.1_g000006 Rmu_sc0005142.1_g000041 Rmu_sc0005777.1_g000001 Rmu_sc0006420.1_g000019 Rmu_sc0006803.1_g000016 Rmu_sc0007034.1_g000015 Rmu_sc0008079.1_g000017 Rmu_sc0008148.1_g000040 Rmu_sc0008608.1_g000007 Rmu_sc0008675.1_g000001 Rmu_sc0009663.1_g000001 Rmu_sc0010188.1_g000003 Rmu_sc0010739.1_g000005 Rmu_sc0016265.1_g000001 Rmu_sc0031757.1_g000001 Rmu_ssc0000087.1_g000024 Rmu_ssc0000438.1_g000029
rosa_roxburghii Rroxscaffold_1G00003350
rosa_rugosa Rorug03G0248400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 254
AciI CCGC 4 cut(s) 592, 642, 645, 794
AclI AACGTT 1 cut(s) 318
AclWI GGATC 8 cut(s) 183, 340, 348, 361, 436, 825, 830, 843
AcsI RAATTY 2 cut(s) 308, 442
AfaI GTAC 1 cut(s) 421
AfiI CCNNNNNNNGG 2 cut(s) 117, 730
AgeI ACCGGT 1 cut(s) 117
AgsI TTSAA 3 cut(s) 206, 496, 742
AjnI CCWGG 2 cut(s) 153, 570
AluBI AGCT 8 cut(s) 31, 137, 160, 604, 702, 781, 803, 852
AluI AGCT 8 cut(s) 31, 137, 160, 604, 702, 781, 803, 852
Alw21I GWGCWC 2 cut(s) 162, 805
Alw26I GTCTC 2 cut(s) 647, 789
AlwI GGATC 8 cut(s) 183, 340, 348, 361, 436, 825, 830, 843
Ama87I CYCGRG 2 cut(s) 697, 847
AoxI GGCC 1 cut(s) 104
ApoI RAATTY 2 cut(s) 308, 442
AsiGI ACCGGT 1 cut(s) 117
Asp700I GAANNNNTTC 1 cut(s) 257
AspS9I GGNCC 1 cut(s) 381
AsuC2I CCSGG 1 cut(s) 658
AsuHPI GGTGA 2 cut(s) 480, 560
AvaI CYCGRG 2 cut(s) 697, 847
AvaII GGWCC 1 cut(s) 381
BamHI GGATCC 2 cut(s) 353, 835
BanII GRGCYC 2 cut(s) 162, 805
BauI CACGAG 1 cut(s) 285
BbsI GAAGAC 2 cut(s) 209, 250
Bbv12I GWGCWC 2 cut(s) 162, 805
BccI CCATC 5 cut(s) 50, 368, 419, 675, 753
BceAI ACGGC 1 cut(s) 643
BcgI CGANNNNNNTGC 2 cut(s) 68, 102
BciT130I CCWGG 2 cut(s) 155, 572
BcnI CCSGG 1 cut(s) 658
BcoDI GTCTC 2 cut(s) 647, 789
BfaI CTAG 1 cut(s) 143
BfmI CTRYAG 1 cut(s) 853
BglI GCCNNNNNGGC 1 cut(s) 103
BglII AGATCT 1 cut(s) 210
BisI GCNGC 3 cut(s) 643, 646, 795
BlsI GCNGC 3 cut(s) 644, 647, 796
Bme1390I CCNGG 3 cut(s) 155, 572, 658
Bme18I GGWCC 1 cut(s) 381
BmeT110I CYCGRG 2 cut(s) 697, 847
BmgT120I GGNCC 1 cut(s) 381
BmiI GGNNCC 5 cut(s) 6, 269, 355, 403, 837
BmrFI CCNGG 3 cut(s) 155, 572, 658
BpiI GAAGAC 2 cut(s) 209, 250
BpmI CTGGAG 4 cut(s) 137, 177, 809, 819
BpuEI CTTGAG 1 cut(s) 263
BpuMI CCSGG 1 cut(s) 658
Bsa29I ATCGAT 1 cut(s) 811
BsaI GGTCTC 1 cut(s) 647
BsaWI WCCGGW 1 cut(s) 117
BsaXI ACNNNNNCTCC 2 cut(s) 767, 797
Bsc4I CCNNNNNNNGG 2 cut(s) 117, 730
Bse118I RCCGGY 1 cut(s) 117
Bse1I ACTGG 2 cut(s) 412, 421
BseBI CCWGG 2 cut(s) 155, 572
BseCI ATCGAT 1 cut(s) 811
BseGI GGATG 2 cut(s) 61, 667
BseLI CCNNNNNNNGG 2 cut(s) 117, 730
BseNI ACTGG 2 cut(s) 412, 421
BseRI GAGGAG 4 cut(s) 475, 573, 576, 791
BseYI CCCAGC 1 cut(s) 39
Bsh1285I CGRYCG 1 cut(s) 815
BshFI GGCC 1 cut(s) 106
BshTI ACCGGT 1 cut(s) 117
BshVI ATCGAT 1 cut(s) 811
BsiEI CGRYCG 1 cut(s) 815
BsiHKAI GWGCWC 2 cut(s) 162, 805
BsiHKCI CYCGRG 2 cut(s) 697, 847
BsiSI CCGG 3 cut(s) 118, 636, 657
BslI CCNNNNNNNGG 2 cut(s) 117, 730
BsmAI GTCTC 2 cut(s) 647, 789
BsnI GGCC 1 cut(s) 106
Bso31I GGTCTC 1 cut(s) 647
BsoBI CYCGRG 2 cut(s) 697, 847
Bsp1286I GDGCHC 2 cut(s) 162, 805
BspACI CCGC 4 cut(s) 592, 642, 645, 794
BspANI GGCC 1 cut(s) 106
BspDI ATCGAT 1 cut(s) 811
BspLI GGNNCC 5 cut(s) 6, 269, 355, 403, 837
BspPI GGATC 8 cut(s) 183, 340, 348, 361, 436, 825, 830, 843
BspTNI GGTCTC 1 cut(s) 647
BsrFI RCCGGY 1 cut(s) 117
BsrI ACTGG 2 cut(s) 412, 421
BssAI RCCGGY 1 cut(s) 117
BssSI CACGAG 1 cut(s) 285
Bst2BI CACGAG 1 cut(s) 285
Bst2UI CCWGG 2 cut(s) 155, 572
Bst6I CTCTTC 1 cut(s) 645
BstF5I GGATG 2 cut(s) 61, 667
BstMAI GTCTC 2 cut(s) 647, 789
BstMCI CGRYCG 1 cut(s) 815
BstMWI GCNNNNNNNGC 2 cut(s) 103, 800
BstNI CCWGG 2 cut(s) 155, 572
BstSCI CCNGG 3 cut(s) 153, 570, 656
BstSFI CTRYAG 1 cut(s) 853
BstV2I GAAGAC 2 cut(s) 209, 250
BstX2I RGATCY 5 cut(s) 175, 210, 332, 353, 835
BstYI RGATCY 5 cut(s) 175, 210, 332, 353, 835
Bsu15I ATCGAT 1 cut(s) 811
BsuRI GGCC 1 cut(s) 106
BsuTUI ATCGAT 1 cut(s) 811
BtsCI GGATG 2 cut(s) 61, 667
BtsIMutI CAGTG 1 cut(s) 405
Cfr10I RCCGGY 1 cut(s) 117
Cfr13I GGNCC 1 cut(s) 381
ClaI ATCGAT 1 cut(s) 811
CseI GACGC 1 cut(s) 445
Csp6I GTAC 1 cut(s) 420
CspAI ACCGGT 1 cut(s) 117
CviAII CATG 3 cut(s) 453, 547, 689
CviQI GTAC 1 cut(s) 420
DrdI GACNNNNNNGTC 1 cut(s) 254
DseDI GACNNNNNNGTC 1 cut(s) 254
Eam1104I CTCTTC 1 cut(s) 645
EarI CTCTTC 1 cut(s) 645
Ecl136II GAGCTC 2 cut(s) 160, 803
Eco24I GRGCYC 2 cut(s) 162, 805
Eco31I GGTCTC 1 cut(s) 647
Eco47I GGWCC 1 cut(s) 381
Eco53kI GAGCTC 2 cut(s) 160, 803
Eco88I CYCGRG 2 cut(s) 697, 847
EcoICRI GAGCTC 2 cut(s) 160, 803
EcoRII CCWGG 2 cut(s) 153, 570
EcoT38I GRGCYC 2 cut(s) 162, 805
FaeI CATG 3 cut(s) 456, 550, 692
FalI AAGNNNNNCTT 2 cut(s) 242, 274
FatI CATG 3 cut(s) 452, 546, 688
FauI CCCGC 1 cut(s) 599
FauNDI CATATG 1 cut(s) 232
Fnu4HI GCNGC 3 cut(s) 643, 646, 795
FokI GGATG 2 cut(s) 68, 654
FriOI GRGCYC 2 cut(s) 162, 805
Fsp4HI GCNGC 3 cut(s) 643, 646, 795
FspBI CTAG 1 cut(s) 143
GluI GCNGC 3 cut(s) 643, 646, 795
GsaI CCCAGC 1 cut(s) 43
GsuI CTGGAG 4 cut(s) 137, 177, 809, 819
HaeIII GGCC 1 cut(s) 106
HapII CCGG 3 cut(s) 118, 636, 657
HgaI GACGC 1 cut(s) 445
Hin1II CATG 3 cut(s) 456, 550, 692
HincII GTYRAC 1 cut(s) 472
HindII GTYRAC 1 cut(s) 472
HinfI GANTC 4 cut(s) 124, 147, 202, 874
HpaII CCGG 3 cut(s) 118, 636, 657
HphI GGTGA 2 cut(s) 480, 560
Hpy166II GTNNAC 2 cut(s) 123, 472
Hpy188I TCNGA 4 cut(s) 225, 315, 750, 817
Hpy188III TCNNGA 7 cut(s) 194, 206, 271, 287, 338, 788, 847
Hpy8I GTNNAC 2 cut(s) 123, 472
Hpy99I CGWCG 2 cut(s) 461, 616
HpyAV CCTTC 2 cut(s) 502, 722
HpyCH4IV ACGT 3 cut(s) 255, 318, 614
HpyCH4V TGCA 1 cut(s) 771
HpyF10VI GCNNNNNNNGC 2 cut(s) 103, 800
HpySE526I ACGT 3 cut(s) 255, 318, 614
Hsp92II CATG 3 cut(s) 456, 550, 692
LmnI GCTCC 5 cut(s) 28, 157, 778, 800, 827
MaeI CTAG 1 cut(s) 143
MaeII ACGT 3 cut(s) 255, 318, 614
MaeIII GTNAC 2 cut(s) 623, 692
MboII GAAGA 3 cut(s) 209, 250, 662
MfeI CAATTG 1 cut(s) 432
MflI RGATCY 5 cut(s) 175, 210, 332, 353, 835
MhlI GDGCHC 2 cut(s) 162, 805
MluCI AATT 4 cut(s) 308, 346, 432, 442
MlyI GAGTC 1 cut(s) 118
MroXI GAANNNNTTC 1 cut(s) 257
MspI CCGG 3 cut(s) 118, 636, 657
MspR9I CCNGG 3 cut(s) 155, 572, 658
MunI CAATTG 1 cut(s) 432
MvaI CCWGG 2 cut(s) 155, 572
MwoI GCNNNNNNNGC 2 cut(s) 103, 800
NciI CCSGG 1 cut(s) 658
NdeI CATATG 1 cut(s) 232
NlaIII CATG 3 cut(s) 456, 550, 692
NlaIV GGNNCC 5 cut(s) 6, 269, 355, 403, 837
NmeAIII GCCGAG 1 cut(s) 103
PaeR7I CTCGAG 2 cut(s) 697, 847
PcsI WCGNNNNNNNCGW 1 cut(s) 817
PdmI GAANNNNTTC 1 cut(s) 257
PfeI GAWTC 3 cut(s) 147, 202, 874
PfoI TCCNGGA 1 cut(s) 153
PinAI ACCGGT 1 cut(s) 117
PkrI GCNGC 3 cut(s) 644, 647, 796
Ple19I CGATCG 1 cut(s) 815
PleI GAGTC 1 cut(s) 118
PpsI GAGTC 1 cut(s) 118
Psp124BI GAGCTC 2 cut(s) 162, 805
Psp1406I AACGTT 1 cut(s) 318
Psp6I CCWGG 2 cut(s) 153, 570
PspFI CCCAGC 1 cut(s) 39
PspGI CCWGG 2 cut(s) 153, 570
PspN4I GGNNCC 5 cut(s) 6, 269, 355, 403, 837
PspPI GGNCC 1 cut(s) 381
PspXI VCTCGAGB 1 cut(s) 697
PsuI RGATCY 5 cut(s) 175, 210, 332, 353, 835
PvuI CGATCG 1 cut(s) 815
RsaI GTAC 1 cut(s) 421
RsaNI GTAC 1 cut(s) 420
SacI GAGCTC 2 cut(s) 162, 805
SatI GCNGC 3 cut(s) 643, 646, 795
Sau96I GGNCC 1 cut(s) 381
SchI GAGTC 1 cut(s) 118
ScrFI CCNGG 3 cut(s) 155, 572, 658
SduI GDGCHC 2 cut(s) 162, 805
SfcI CTRYAG 1 cut(s) 853
Sfr274I CTCGAG 2 cut(s) 697, 847
SinI GGWCC 1 cut(s) 381
SlaI CTCGAG 2 cut(s) 697, 847
SmlI CTYRAG 3 cut(s) 278, 697, 847
SmoI CTYRAG 3 cut(s) 278, 697, 847
Sse9I AATT 4 cut(s) 308, 346, 432, 442
SsiI CCGC 4 cut(s) 592, 642, 645, 794
SspMI CTAG 1 cut(s) 143
SstI GAGCTC 2 cut(s) 162, 805
StyD4I CCNGG 3 cut(s) 153, 570, 656
TaiI ACGT 3 cut(s) 258, 321, 617
TaqI TCGA 8 cut(s) 51, 243, 339, 579, 698, 811, 820, 848
TasI AATT 4 cut(s) 308, 346, 432, 442
TauI GCSGC 3 cut(s) 645, 648, 797
TfiI GAWTC 3 cut(s) 147, 202, 874
TscAI CASTG 1 cut(s) 412
TspDTI ATGAA 2 cut(s) 209, 535
TspGWI ACGGA 2 cut(s) 788, 840
TspRI CASTG 1 cut(s) 412
VpaK11BI GGWCC 1 cut(s) 381
XapI RAATTY 2 cut(s) 308, 442
XhoI CTCGAG 2 cut(s) 697, 847
XmnI GAANNNNTTC 1 cut(s) 257
XspI CTAG 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.