Rmu_sc0000851.1_g000015

Homeodomain

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000851.1
Physical Location & Seq
Reverse (-)
46151 .. 46930
780 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000851.1_g000015.1.cds

Sequence Viewer

Length: 780 bp
atggaaccacgaactctgcaactaatggagttacaaacccagcaacaaatggaattacaagcccagcaaccaaccgaggagggaggaagcatccaagcagccgggagtagtgccaacacgcctatcaggccgaccaataaccggtggactcccacaccatatcaactaagaatcctccaggagctttactatgacaaggtgcttaaatacccatctccagagcagattcaagagatctgccttcatctgcaacaatatgggcagattgaggacaagaacgtcttcttttggttccagaacctcaaggctcgtgagaggcagaagttgaaggaatttcggaacgttcgggttggtggatctcttgatatcaattttggatccactagttctactgatgatggtaggtccattgatctaaactttggttcgactagttctactagtactgacagatccattgatctaaattttgggtcacgtgtcggctatggtgttgactcatattcctcctcacccttcaacattaataccagtactacctcttttggcacaacagaaggacaatctttcatggaacaacgaggaggagatcaccaggaggtcgagactcttcctctgttccccatgcacggtgagaacgtccttggtaacccgaagactacttccgaggaaggtagcgcatatggttggtactccggtggctgggacgacaacaatggtggttcttgcatttctcttgagcttagtctcaactcctccagagctgctgacatggcttag

Protein Analysis

259

Amino Acids

28.87

Weight (kDa)

4.71

Isoelectric Point (pI)

55.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000180)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr0c19g0499991 RchiOBHm_Chr0c19g0500021 RchiOBHm_Chr0c19g0500131 RchiOBHm_Chr0c31g0501321 RchiOBHm_Chr0c31g0501441 RchiOBHm_Chr1g0365611 RchiOBHm_Chr1g0366061 RchiOBHm_Chr1g0367951 RchiOBHm_Chr1g0369471 RchiOBHm_Chr1g0377271 RchiOBHm_Chr1g0379021 RchiOBHm_Chr1g0379461 RchiOBHm_Chr1g0381431 RchiOBHm_Chr1g0383551 RchiOBHm_Chr1g0383621 RchiOBHm_Chr2g0120951 RchiOBHm_Chr2g0121321 RchiOBHm_Chr2g0121381 RchiOBHm_Chr2g0121801 RchiOBHm_Chr2g0121861 RchiOBHm_Chr2g0122211 RchiOBHm_Chr2g0122471 RchiOBHm_Chr2g0122511 RchiOBHm_Chr2g0122751 RchiOBHm_Chr2g0123361 RchiOBHm_Chr2g0124071 RchiOBHm_Chr2g0124341 RchiOBHm_Chr2g0124361 RchiOBHm_Chr2g0124511 RchiOBHm_Chr2g0124641 RchiOBHm_Chr2g0125051 RchiOBHm_Chr2g0125111 RchiOBHm_Chr2g0125641 RchiOBHm_Chr2g0125871 RchiOBHm_Chr2g0125901 RchiOBHm_Chr2g0126011 RchiOBHm_Chr2g0126291 RchiOBHm_Chr2g0126341 RchiOBHm_Chr2g0126611 RchiOBHm_Chr2g0126671 RchiOBHm_Chr2g0126701 RchiOBHm_Chr2g0127021 RchiOBHm_Chr2g0127071 RchiOBHm_Chr2g0127361 RchiOBHm_Chr2g0127691 RchiOBHm_Chr2g0128041 RchiOBHm_Chr2g0128051 RchiOBHm_Chr2g0128061 RchiOBHm_Chr2g0128141 RchiOBHm_Chr2g0128171 RchiOBHm_Chr2g0128181 RchiOBHm_Chr2g0128551 RchiOBHm_Chr2g0128991 RchiOBHm_Chr2g0130061 RchiOBHm_Chr2g0130391 RchiOBHm_Chr2g0130631 RchiOBHm_Chr2g0130921 RchiOBHm_Chr2g0132731 RchiOBHm_Chr2g0133461 RchiOBHm_Chr2g0133921 RchiOBHm_Chr2g0134031 RchiOBHm_Chr2g0134281 RchiOBHm_Chr2g0134351 RchiOBHm_Chr2g0135501 RchiOBHm_Chr2g0135821 RchiOBHm_Chr2g0135931 RchiOBHm_Chr2g0137501 RchiOBHm_Chr2g0139141 RchiOBHm_Chr2g0139511 RchiOBHm_Chr2g0142411 RchiOBHm_Chr2g0143261 RchiOBHm_Chr2g0144171 RchiOBHm_Chr2g0144741 RchiOBHm_Chr2g0144841 RchiOBHm_Chr2g0145021 RchiOBHm_Chr2g0145831 RchiOBHm_Chr2g0145881 RchiOBHm_Chr2g0146081 RchiOBHm_Chr2g0146141 RchiOBHm_Chr2g0146671 RchiOBHm_Chr2g0149001 RchiOBHm_Chr2g0151811 RchiOBHm_Chr2g0151821 RchiOBHm_Chr2g0151831 RchiOBHm_Chr2g0152051 RchiOBHm_Chr2g0154791 RchiOBHm_Chr2g0155541 RchiOBHm_Chr2g0160791 RchiOBHm_Chr2g0161631 RchiOBHm_Chr2g0162151 RchiOBHm_Chr2g0162751 RchiOBHm_Chr2g0166561 RchiOBHm_Chr2g0166751 RchiOBHm_Chr2g0168891 RchiOBHm_Chr2g0170211 RchiOBHm_Chr2g0170781 RchiOBHm_Chr2g0172831 RchiOBHm_Chr2g0174791 RchiOBHm_Chr3g0448081 RchiOBHm_Chr3g0449761 RchiOBHm_Chr3g0453291 RchiOBHm_Chr3g0456271 RchiOBHm_Chr3g0456461 RchiOBHm_Chr3g0458351 RchiOBHm_Chr3g0461411 RchiOBHm_Chr3g0461511 RchiOBHm_Chr3g0463871 RchiOBHm_Chr3g0467841 RchiOBHm_Chr3g0470081 RchiOBHm_Chr3g0470571 RchiOBHm_Chr7g0187061 RchiOBHm_Chr7g0187461 RchiOBHm_Chr7g0187681 RchiOBHm_Chr7g0189901 RchiOBHm_Chr7g0190271 RchiOBHm_Chr7g0193451 RchiOBHm_Chr7g0194081 RchiOBHm_Chr7g0195771 RchiOBHm_Chr7g0196301 RchiOBHm_Chr7g0196911
rosa_multiflora Rmu_sc0000236.1_g000047 Rmu_sc0000284.1_g000007 Rmu_sc0000288.1_g000006 Rmu_sc0000507.1_g000017 Rmu_sc0000580.1_g000015 Rmu_sc0000663.1_g000011 Rmu_sc0000675.1_g000024 Rmu_sc0000693.1_g000072 Rmu_sc0000779.1_g000005 Rmu_sc0000851.1_g000015 Rmu_sc0000962.1_g000001 Rmu_sc0001493.1_g000055 Rmu_sc0001669.1_g000025 Rmu_sc0001891.1_g000051 Rmu_sc0001926.1_g000007 Rmu_sc0002082.1_g000025 Rmu_sc0002141.1_g000001 Rmu_sc0002141.1_g000004 Rmu_sc0002414.1_g000012 Rmu_sc0002557.1_g000022 Rmu_sc0002709.1_g000038 Rmu_sc0002897.1_g000004 Rmu_sc0002934.1_g000055 Rmu_sc0003692.1_g000017 Rmu_sc0004283.1_g000068 Rmu_sc0004598.1_g000010 Rmu_sc0004614.1_g000004 Rmu_sc0004805.1_g000006 Rmu_sc0005142.1_g000041 Rmu_sc0005777.1_g000001 Rmu_sc0006420.1_g000019 Rmu_sc0006803.1_g000016 Rmu_sc0007034.1_g000015 Rmu_sc0008079.1_g000017 Rmu_sc0008148.1_g000040 Rmu_sc0008608.1_g000007 Rmu_sc0008675.1_g000001 Rmu_sc0009663.1_g000001 Rmu_sc0010188.1_g000003 Rmu_sc0010739.1_g000005 Rmu_sc0016265.1_g000001 Rmu_sc0031757.1_g000001 Rmu_ssc0000087.1_g000024 Rmu_ssc0000438.1_g000029
rosa_roxburghii Rroxscaffold_1G00003350
rosa_rugosa Rorug03G0248400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 278
AclI AACGTT 1 cut(s) 342
AclWI GGATC 4 cut(s) 364, 372, 385, 447
AcsI RAATTY 2 cut(s) 332, 466
AcvI CACGTG 1 cut(s) 479
AfaI GTAC 3 cut(s) 445, 535, 692
AfiI CCNNNNNNNGG 3 cut(s) 141, 629, 702
AflIII ACRYGT 1 cut(s) 478
AgeI ACCGGT 1 cut(s) 141
AgsI TTSAA 3 cut(s) 230, 328, 520
AhlI ACTAGT 3 cut(s) 383, 431, 440
AjnI CCWGG 2 cut(s) 177, 594
AluBI AGCT 3 cut(s) 184, 742, 764
AluI AGCT 3 cut(s) 184, 742, 764
Alw26I GTCTC 2 cut(s) 599, 752
AlwI GGATC 4 cut(s) 364, 372, 385, 447
AoxI GGCC 1 cut(s) 128
ApeKI GCWGC 2 cut(s) 98, 764
ApoI RAATTY 2 cut(s) 332, 466
AseI ATTAAT 1 cut(s) 525
AsiGI ACCGGT 1 cut(s) 141
Asp700I GAANNNNTTC 1 cut(s) 281
AspLEI GCGC 1 cut(s) 680
AspS9I GGNCC 1 cut(s) 405
AsuC2I CCSGG 1 cut(s) 103
AsuHPI GGTGA 3 cut(s) 504, 584, 644
AvaII GGWCC 1 cut(s) 405
BaeI ACNNNNGTAYC 2 cut(s) 682, 715
BamHI GGATCC 1 cut(s) 377
BauI CACGAG 1 cut(s) 309
BbrPI CACGTG 1 cut(s) 479
BbsI GAAGAC 2 cut(s) 274, 662
BbvI GCAGC 2 cut(s) 110, 751
BccI CCATC 2 cut(s) 220, 392
BciT130I CCWGG 2 cut(s) 179, 596
BcnI CCSGG 1 cut(s) 103
BcoDI GTCTC 2 cut(s) 599, 752
BcuI ACTAGT 3 cut(s) 383, 431, 440
BfaI CTAG 3 cut(s) 384, 432, 441
BglI GCCNNNNNGGC 1 cut(s) 127
BglII AGATCT 1 cut(s) 234
BisI GCNGC 2 cut(s) 99, 765
BlsI GCNGC 2 cut(s) 100, 766
BmcAI AGTACT 2 cut(s) 445, 535
Bme1390I CCNGG 3 cut(s) 103, 179, 596
Bme18I GGWCC 1 cut(s) 405
BmgT120I GGNCC 1 cut(s) 405
BmiI GGNNCC 3 cut(s) 6, 293, 379
BmrFI CCNGG 3 cut(s) 103, 179, 596
BmsI GCATC 1 cut(s) 99
BpiI GAAGAC 2 cut(s) 274, 662
BpmI CTGGAG 3 cut(s) 161, 201, 742
BpuEI CTTGAG 2 cut(s) 287, 758
BpuMI CCSGG 1 cut(s) 103
BsaAI YACGTR 1 cut(s) 479
BsaJI CCNNGG 3 cut(s) 75, 643, 666
BsaWI WCCGGW 2 cut(s) 141, 695
Bsc4I CCNNNNNNNGG 3 cut(s) 141, 629, 702
Bse118I RCCGGY 1 cut(s) 141
Bse1I ACTGG 1 cut(s) 531
BseBI CCWGG 2 cut(s) 179, 596
BseDI CCNNGG 3 cut(s) 75, 643, 666
BseGI GGATG 1 cut(s) 90
BseLI CCNNNNNNNGG 3 cut(s) 141, 629, 702
BseNI ACTGG 1 cut(s) 531
BseRI GAGGAG 5 cut(s) 92, 499, 597, 600, 745
BseXI GCAGC 2 cut(s) 110, 751
BseYI CCCAGC 3 cut(s) 39, 63, 702
BshFI GGCC 1 cut(s) 130
BshTI ACCGGT 1 cut(s) 141
BsiSI CCGG 3 cut(s) 102, 142, 696
BslFI GGGAC 1 cut(s) 719
BslI CCNNNNNNNGG 3 cut(s) 141, 629, 702
BsmAI GTCTC 2 cut(s) 599, 752
BsmFI GGGAC 1 cut(s) 719
BsnI GGCC 1 cut(s) 130
Bsp143I GATC 7 cut(s) 234, 356, 377, 412, 452, 460, 589
BspANI GGCC 1 cut(s) 130
BspLI GGNNCC 3 cut(s) 6, 293, 379
BspPI GGATC 4 cut(s) 364, 372, 385, 447
BsrFI RCCGGY 1 cut(s) 141
BsrI ACTGG 1 cut(s) 531
BssAI RCCGGY 1 cut(s) 141
BssECI CCNNGG 3 cut(s) 75, 643, 666
BssMI GATC 7 cut(s) 234, 356, 377, 412, 452, 460, 589
BssSI CACGAG 1 cut(s) 309
BssT1I CCWWGG 1 cut(s) 643
Bst2BI CACGAG 1 cut(s) 309
Bst2UI CCWGG 2 cut(s) 179, 596
Bst4CI ACNGT 1 cut(s) 632
Bst6I CTCTTC 1 cut(s) 615
BstBAI YACGTR 1 cut(s) 479
BstDEI CTNAG 3 cut(s) 167, 743, 777
BstEII GGTNACC 1 cut(s) 647
BstF5I GGATG 1 cut(s) 90
BstHHI GCGC 1 cut(s) 680
BstKTI GATC 7 cut(s) 237, 359, 380, 415, 455, 463, 592
BstMAI GTCTC 2 cut(s) 599, 752
BstMBI GATC 7 cut(s) 234, 356, 377, 412, 452, 460, 589
BstMWI GCNNNNNNNGC 2 cut(s) 127, 773
BstNI CCWGG 2 cut(s) 179, 596
BstPI GGTNACC 1 cut(s) 647
BstSCI CCNGG 3 cut(s) 101, 177, 594
BstV1I GCAGC 2 cut(s) 110, 751
BstV2I GAAGAC 2 cut(s) 274, 662
BstX2I RGATCY 4 cut(s) 234, 356, 377, 452
BstYI RGATCY 4 cut(s) 234, 356, 377, 452
BsuRI GGCC 1 cut(s) 130
BtsCI GGATG 1 cut(s) 90
CfoI GCGC 1 cut(s) 680
Cfr10I RCCGGY 1 cut(s) 141
Cfr13I GGNCC 1 cut(s) 405
Csp6I GTAC 3 cut(s) 444, 534, 691
CspAI ACCGGT 1 cut(s) 141
CspCI CAANNNNNGTGG 2 cut(s) 700, 735
CviAII CATG 3 cut(s) 571, 625, 772
CviQI GTAC 3 cut(s) 444, 534, 691
DdeI CTNAG 3 cut(s) 167, 743, 777
DpnI GATC 7 cut(s) 236, 358, 379, 414, 454, 462, 591
DpnII GATC 7 cut(s) 234, 356, 377, 412, 452, 460, 589
DrdI GACNNNNNNGTC 1 cut(s) 278
DseDI GACNNNNNNGTC 1 cut(s) 278
Eam1104I CTCTTC 1 cut(s) 615
EarI CTCTTC 1 cut(s) 615
Eco130I CCWWGG 1 cut(s) 643
Eco32I GATATC 1 cut(s) 367
Eco47I GGWCC 1 cut(s) 405
Eco72I CACGTG 1 cut(s) 479
Eco91I GGTNACC 1 cut(s) 647
EcoO65I GGTNACC 1 cut(s) 647
EcoRII CCWGG 2 cut(s) 177, 594
EcoRV GATATC 1 cut(s) 367
EcoT14I CCWWGG 1 cut(s) 643
ErhI CCWWGG 1 cut(s) 643
FaeI CATG 3 cut(s) 574, 628, 775
FalI AAGNNNNNCTT 2 cut(s) 266, 298
FaqI GGGAC 1 cut(s) 719
FatI CATG 3 cut(s) 570, 624, 771
FauNDI CATATG 1 cut(s) 682
Fnu4HI GCNGC 2 cut(s) 99, 765
FokI GGATG 1 cut(s) 77
Fsp4HI GCNGC 2 cut(s) 99, 765
FspBI CTAG 3 cut(s) 384, 432, 441
GlaI GCGC 1 cut(s) 679
GluI GCNGC 2 cut(s) 99, 765
GsaI CCCAGC 3 cut(s) 43, 67, 706
GsuI CTGGAG 3 cut(s) 161, 201, 742
HaeIII GGCC 1 cut(s) 130
HapII CCGG 3 cut(s) 102, 142, 696
HhaI GCGC 1 cut(s) 680
Hin1II CATG 3 cut(s) 574, 628, 775
Hin6I GCGC 1 cut(s) 678
HinP1I GCGC 1 cut(s) 678
HincII GTYRAC 1 cut(s) 496
HindII GTYRAC 1 cut(s) 496
HinfI GANTC 5 cut(s) 148, 171, 226, 497, 607
HpaII CCGG 3 cut(s) 102, 142, 696
HphI GGTGA 3 cut(s) 504, 584, 644
Hpy166II GTNNAC 2 cut(s) 147, 496
Hpy188I TCNGA 2 cut(s) 339, 667
Hpy188III TCNNGA 8 cut(s) 218, 230, 295, 311, 362, 604, 737, 759
Hpy8I GTNNAC 2 cut(s) 147, 496
HpyAV CCTTC 5 cut(s) 251, 322, 526, 551, 665
HpyCH4III ACNGT 1 cut(s) 632
HpyCH4IV ACGT 4 cut(s) 279, 342, 478, 639
HpyCH4V TGCA 4 cut(s) 19, 250, 628, 729
HpyF10VI GCNNNNNNNGC 2 cut(s) 127, 773
HpyF3I CTNAG 3 cut(s) 167, 743, 777
HpySE526I ACGT 4 cut(s) 279, 342, 478, 639
Hsp92II CATG 3 cut(s) 574, 628, 775
HspAI GCGC 1 cut(s) 678
Kzo9I GATC 7 cut(s) 234, 356, 377, 412, 452, 460, 589
LmnI GCTCC 1 cut(s) 181
Lsp1109I GCAGC 2 cut(s) 110, 751
LweI GCATC 1 cut(s) 99
MaeI CTAG 3 cut(s) 384, 432, 441
MaeII ACGT 4 cut(s) 279, 342, 478, 639
MaeIII GTNAC 3 cut(s) 30, 474, 647
MalI GATC 7 cut(s) 236, 358, 379, 414, 454, 462, 591
MboI GATC 7 cut(s) 234, 356, 377, 412, 452, 460, 589
MboII GAAGA 3 cut(s) 274, 602, 667
MflI RGATCY 4 cut(s) 234, 356, 377, 452
MluCI AATT 4 cut(s) 53, 332, 370, 466
MlyI GAGTC 3 cut(s) 142, 491, 601
MroXI GAANNNNTTC 1 cut(s) 281
MseI TTAA 2 cut(s) 204, 525
MspI CCGG 3 cut(s) 102, 142, 696
MspR9I CCNGG 3 cut(s) 103, 179, 596
MvaI CCWGG 2 cut(s) 179, 596
MwoI GCNNNNNNNGC 2 cut(s) 127, 773
NciI CCSGG 1 cut(s) 103
NdeI CATATG 1 cut(s) 682
NdeII GATC 7 cut(s) 234, 356, 377, 412, 452, 460, 589
NlaIII CATG 3 cut(s) 574, 628, 775
NlaIV GGNNCC 3 cut(s) 6, 293, 379
NmuCI GTSAC 1 cut(s) 474
PcsI WCGNNNNNNNCGW 1 cut(s) 636
PdmI GAANNNNTTC 1 cut(s) 281
PfeI GAWTC 2 cut(s) 171, 226
PfoI TCCNGGA 1 cut(s) 177
PinAI ACCGGT 1 cut(s) 141
PkrI GCNGC 2 cut(s) 100, 766
PleI GAGTC 3 cut(s) 142, 491, 601
PmaCI CACGTG 1 cut(s) 479
PmlI CACGTG 1 cut(s) 479
PpsI GAGTC 3 cut(s) 142, 491, 601
Ppu21I YACGTR 1 cut(s) 479
PshBI ATTAAT 1 cut(s) 525
Psp1406I AACGTT 1 cut(s) 342
Psp6I CCWGG 2 cut(s) 177, 594
PspCI CACGTG 1 cut(s) 479
PspEI GGTNACC 1 cut(s) 647
PspFI CCCAGC 3 cut(s) 39, 63, 702
PspGI CCWGG 2 cut(s) 177, 594
PspN4I GGNNCC 3 cut(s) 6, 293, 379
PspPI GGNCC 1 cut(s) 405
PsuI RGATCY 4 cut(s) 234, 356, 377, 452
RsaI GTAC 3 cut(s) 445, 535, 692
RsaNI GTAC 3 cut(s) 444, 534, 691
SaqAI TTAA 2 cut(s) 204, 525
SatI GCNGC 2 cut(s) 99, 765
Sau3AI GATC 7 cut(s) 234, 356, 377, 412, 452, 460, 589
Sau96I GGNCC 1 cut(s) 405
ScaI AGTACT 2 cut(s) 445, 535
SchI GAGTC 3 cut(s) 142, 491, 601
ScrFI CCNGG 3 cut(s) 103, 179, 596
SfaNI GCATC 1 cut(s) 99
SinI GGWCC 1 cut(s) 405
SmlI CTYRAG 2 cut(s) 302, 737
SmoI CTYRAG 2 cut(s) 302, 737
SpeI ACTAGT 3 cut(s) 383, 431, 440
Sse9I AATT 4 cut(s) 53, 332, 370, 466
SspMI CTAG 3 cut(s) 384, 432, 441
StyD4I CCNGG 3 cut(s) 101, 177, 594
StyI CCWWGG 1 cut(s) 643
TaaI ACNGT 1 cut(s) 632
TaiI ACGT 4 cut(s) 282, 345, 481, 642
TaqI TCGA 2 cut(s) 428, 603
TasI AATT 4 cut(s) 53, 332, 370, 466
TatI WGTACW 2 cut(s) 443, 533
TfiI GAWTC 2 cut(s) 171, 226
Tru1I TTAA 2 cut(s) 204, 525
Tru9I TTAA 2 cut(s) 204, 525
TseFI GTSAC 1 cut(s) 474
TseI GCWGC 2 cut(s) 98, 764
Tsp45I GTSAC 1 cut(s) 474
TspDTI ATGAA 2 cut(s) 233, 559
VpaK11BI GGWCC 1 cut(s) 405
VspI ATTAAT 1 cut(s) 525
XapI RAATTY 2 cut(s) 332, 466
XmnI GAANNNNTTC 1 cut(s) 281
XspI CTAG 3 cut(s) 384, 432, 441
ZrmI AGTACT 2 cut(s) 445, 535
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.