Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000180

Physical Location & Seq

Genomic Coordinates Reverse (-)

76666455 .. 76666943

Gene Structure 489 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ52921

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGAGCAACAGACCCAGCAACAAATCGAGGATGGAGGAAACAACCAAGCAGCCGGGACTAATAACCGGTGGGCTCCCATACCGCCTCAACTAAGAATCCTCAAGGGCCTTTACTATGATAAGGGTTTTAAGTACCCAACTCCAGAGCAGATTCAAGAGATCTGCCTTCATCTGAAACAGTATGGGCAGATCGAGGACAAGAACGTCTTCTTTTGGTTCCAGAACCTCAAGGCTCGTGAGAGGCAGAAGTTGAAGGAATTTCGGAACGTTCGGGTTGGTGGATCTCTCGATCTCAATTTTGGATCCACTAGTTCTACTGATGATGGTAGGTCCATTGATCTAAACTTTGGTTCCACTGGTTCTACTAGTACTGACACTACTAGAATTATAGCCCCAGACATCGGTCAAAAACCGATGAGAAACAAAAATCCAACCGATGTCTTTGTGGGTGATGAGAAAGATCCGGAAAATGCAGACATCGGTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

162

Amino Acids

18.34

Weight (kDa)

5.47

Isoelectric Point (pI)

36.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	22 - 82	2.2e-09	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000180)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c19g0499991 RchiOBHm_Chr0c19g0500021 RchiOBHm_Chr0c19g0500131 RchiOBHm_Chr0c31g0501321 RchiOBHm_Chr0c31g0501441 RchiOBHm_Chr1g0365611 RchiOBHm_Chr1g0366061 RchiOBHm_Chr1g0367951 RchiOBHm_Chr1g0369471 RchiOBHm_Chr1g0377271 RchiOBHm_Chr1g0379021 RchiOBHm_Chr1g0379461 RchiOBHm_Chr1g0381431 RchiOBHm_Chr1g0383551 RchiOBHm_Chr1g0383621 RchiOBHm_Chr2g0120951 RchiOBHm_Chr2g0121321 RchiOBHm_Chr2g0121381 RchiOBHm_Chr2g0121801 RchiOBHm_Chr2g0121861 RchiOBHm_Chr2g0122211 RchiOBHm_Chr2g0122471 RchiOBHm_Chr2g0122511 RchiOBHm_Chr2g0122751 RchiOBHm_Chr2g0123361 RchiOBHm_Chr2g0124071 RchiOBHm_Chr2g0124341 RchiOBHm_Chr2g0124361 RchiOBHm_Chr2g0124511 RchiOBHm_Chr2g0124641 RchiOBHm_Chr2g0125051 RchiOBHm_Chr2g0125111 RchiOBHm_Chr2g0125641 RchiOBHm_Chr2g0125871 RchiOBHm_Chr2g0125901 RchiOBHm_Chr2g0126011 RchiOBHm_Chr2g0126291 RchiOBHm_Chr2g0126341 RchiOBHm_Chr2g0126611 RchiOBHm_Chr2g0126671 RchiOBHm_Chr2g0126701 RchiOBHm_Chr2g0127021 RchiOBHm_Chr2g0127071 RchiOBHm_Chr2g0127361 RchiOBHm_Chr2g0127691 RchiOBHm_Chr2g0128041 RchiOBHm_Chr2g0128051 RchiOBHm_Chr2g0128061 RchiOBHm_Chr2g0128141 RchiOBHm_Chr2g0128171 RchiOBHm_Chr2g0128181 RchiOBHm_Chr2g0128551 RchiOBHm_Chr2g0128991 RchiOBHm_Chr2g0130061 RchiOBHm_Chr2g0130391 RchiOBHm_Chr2g0130631 RchiOBHm_Chr2g0130921 RchiOBHm_Chr2g0132731 RchiOBHm_Chr2g0133461 RchiOBHm_Chr2g0133921 RchiOBHm_Chr2g0134031 RchiOBHm_Chr2g0134281 RchiOBHm_Chr2g0134351 RchiOBHm_Chr2g0135501 RchiOBHm_Chr2g0135821 RchiOBHm_Chr2g0135931 RchiOBHm_Chr2g0137501 RchiOBHm_Chr2g0139141 RchiOBHm_Chr2g0139511 RchiOBHm_Chr2g0142411 RchiOBHm_Chr2g0143261 RchiOBHm_Chr2g0144171 RchiOBHm_Chr2g0144741 RchiOBHm_Chr2g0144841 RchiOBHm_Chr2g0145021 RchiOBHm_Chr2g0145831 RchiOBHm_Chr2g0145881 RchiOBHm_Chr2g0146081 RchiOBHm_Chr2g0146141 RchiOBHm_Chr2g0146671 RchiOBHm_Chr2g0149001 RchiOBHm_Chr2g0151811 RchiOBHm_Chr2g0151821 RchiOBHm_Chr2g0151831 RchiOBHm_Chr2g0152051 RchiOBHm_Chr2g0154791 RchiOBHm_Chr2g0155541 RchiOBHm_Chr2g0160791 RchiOBHm_Chr2g0161631 RchiOBHm_Chr2g0162151 RchiOBHm_Chr2g0162751 RchiOBHm_Chr2g0166561 RchiOBHm_Chr2g0166751 RchiOBHm_Chr2g0168891 RchiOBHm_Chr2g0170211 RchiOBHm_Chr2g0170781 RchiOBHm_Chr2g0172831 RchiOBHm_Chr2g0174791 RchiOBHm_Chr3g0448081 RchiOBHm_Chr3g0449761 RchiOBHm_Chr3g0453291 RchiOBHm_Chr3g0456271 RchiOBHm_Chr3g0456461 RchiOBHm_Chr3g0458351 RchiOBHm_Chr3g0461411 RchiOBHm_Chr3g0461511 RchiOBHm_Chr3g0463871 RchiOBHm_Chr3g0467841 RchiOBHm_Chr3g0470081 RchiOBHm_Chr3g0470571 RchiOBHm_Chr7g0187061 RchiOBHm_Chr7g0187461 RchiOBHm_Chr7g0187681 RchiOBHm_Chr7g0189901 RchiOBHm_Chr7g0190271 RchiOBHm_Chr7g0193451 RchiOBHm_Chr7g0194081 RchiOBHm_Chr7g0195771 RchiOBHm_Chr7g0196301 RchiOBHm_Chr7g0196911
rosa_multiflora	Rmu_sc0000236.1_g000047 Rmu_sc0000284.1_g000007 Rmu_sc0000288.1_g000006 Rmu_sc0000507.1_g000017 Rmu_sc0000580.1_g000015 Rmu_sc0000663.1_g000011 Rmu_sc0000675.1_g000024 Rmu_sc0000693.1_g000072 Rmu_sc0000779.1_g000005 Rmu_sc0000851.1_g000015 Rmu_sc0000962.1_g000001 Rmu_sc0001493.1_g000055 Rmu_sc0001669.1_g000025 Rmu_sc0001891.1_g000051 Rmu_sc0001926.1_g000007 Rmu_sc0002082.1_g000025 Rmu_sc0002141.1_g000001 Rmu_sc0002141.1_g000004 Rmu_sc0002414.1_g000012 Rmu_sc0002557.1_g000022 Rmu_sc0002709.1_g000038 Rmu_sc0002897.1_g000004 Rmu_sc0002934.1_g000055 Rmu_sc0003692.1_g000017 Rmu_sc0004283.1_g000068 Rmu_sc0004598.1_g000010 Rmu_sc0004614.1_g000004 Rmu_sc0004805.1_g000006 Rmu_sc0005142.1_g000041 Rmu_sc0005777.1_g000001 Rmu_sc0006420.1_g000019 Rmu_sc0006803.1_g000016 Rmu_sc0007034.1_g000015 Rmu_sc0008079.1_g000017 Rmu_sc0008148.1_g000040 Rmu_sc0008608.1_g000007 Rmu_sc0008675.1_g000001 Rmu_sc0009663.1_g000001 Rmu_sc0010188.1_g000003 Rmu_sc0010739.1_g000005 Rmu_sc0016265.1_g000001 Rmu_sc0031757.1_g000001 Rmu_ssc0000087.1_g000024 Rmu_ssc0000438.1_g000029
rosa_roxburghii	Rroxscaffold_1G00003350
rosa_rugosa	Rorug03G0248400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	203
AccIII	TCCGGA	1 cut(s)	463
AciI	CCGC	1 cut(s)	83
AclI	AACGTT	1 cut(s)	267
AclWI	GGATC	4 cut(s)	289, 297, 310, 455
AcsI	RAATTY	1 cut(s)	257
AfaI	GTAC	2 cut(s)	134, 370
AfiI	CCNNNNNNNGG	1 cut(s)	401
AgeI	ACCGGT	1 cut(s)	66
AgsI	TTSAA	2 cut(s)	155, 253
AhlI	ACTAGT	2 cut(s)	308, 365
AlwI	GGATC	4 cut(s)	289, 297, 310, 455
Aor13HI	TCCGGA	1 cut(s)	463
AoxI	GGCC	1 cut(s)	106
ApeKI	GCWGC	1 cut(s)	50
ApoI	RAATTY	1 cut(s)	257
AsiGI	ACCGGT	1 cut(s)	66
Asp700I	GAANNNNTTC	1 cut(s)	206
AspS9I	GGNCC	2 cut(s)	106, 330
AsuC2I	CCSGG	1 cut(s)	55
AsuHPI	GGTGA	1 cut(s)	461
AvaII	GGWCC	1 cut(s)	330
BamHI	GGATCC	1 cut(s)	302
BanII	GRGCYC	1 cut(s)	76
BauI	CACGAG	1 cut(s)	234
BbsI	GAAGAC	1 cut(s)	199
BbvI	GCAGC	1 cut(s)	62
BccI	CCATC	2 cut(s)	26, 317
BcnI	CCSGG	1 cut(s)	55
BcuI	ACTAGT	2 cut(s)	308, 365
BfaI	CTAG	3 cut(s)	309, 366, 381
BglII	AGATCT	1 cut(s)	159
BisI	GCNGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	52
BmcAI	AGTACT	1 cut(s)	370
Bme1390I	CCNGG	1 cut(s)	55
Bme18I	GGWCC	1 cut(s)	330
BmgT120I	GGNCC	2 cut(s)	106, 330
BmiI	GGNNCC	4 cut(s)	75, 218, 304, 352
BmrFI	CCNGG	1 cut(s)	55
BoxI	GACNNNNGTC	1 cut(s)	402
BpiI	GAAGAC	1 cut(s)	199
BpmI	CTGGAG	1 cut(s)	126
BpuEI	CTTGAG	2 cut(s)	86, 212
BpuMI	CCSGG	1 cut(s)	55
BsaWI	WCCGGW	2 cut(s)	66, 463
Bsc4I	CCNNNNNNNGG	1 cut(s)	401
Bse118I	RCCGGY	1 cut(s)	66
Bse1I	ACTGG	1 cut(s)	361
BseAI	TCCGGA	1 cut(s)	463
BseGI	GGATG	1 cut(s)	37
BseLI	CCNNNNNNNGG	1 cut(s)	401
BseNI	ACTGG	1 cut(s)	361
BseXI	GCAGC	1 cut(s)	62
BseYI	CCCAGC	1 cut(s)	15
BshFI	GGCC	1 cut(s)	108
BshTI	ACCGGT	1 cut(s)	66
BsiSI	CCGG	3 cut(s)	54, 67, 464
BslFI	GGGAC	1 cut(s)	70
BslI	CCNNNNNNNGG	1 cut(s)	401
BsmFI	GGGAC	1 cut(s)	70
BsnI	GGCC	1 cut(s)	108
Bsp1286I	GDGCHC	1 cut(s)	76
Bsp13I	TCCGGA	1 cut(s)	463
Bsp143I	GATC	7 cut(s)	159, 189, 281, 289, 302, 337, 460
BspACI	CCGC	1 cut(s)	83
BspANI	GGCC	1 cut(s)	108
BspEI	TCCGGA	1 cut(s)	463
BspLI	GGNNCC	4 cut(s)	75, 218, 304, 352
BspPI	GGATC	4 cut(s)	289, 297, 310, 455
BsrFI	RCCGGY	1 cut(s)	66
BsrI	ACTGG	1 cut(s)	361
BssAI	RCCGGY	1 cut(s)	66
BssMI	GATC	7 cut(s)	159, 189, 281, 289, 302, 337, 460
BssSI	CACGAG	1 cut(s)	234
Bst2BI	CACGAG	1 cut(s)	234
Bst4CI	ACNGT	1 cut(s)	180
BstDEI	CTNAG	1 cut(s)	92
BstF5I	GGATG	1 cut(s)	37
BstKTI	GATC	7 cut(s)	162, 192, 284, 292, 305, 340, 463
BstMBI	GATC	7 cut(s)	159, 189, 281, 289, 302, 337, 460
BstPAI	GACNNNNGTC	1 cut(s)	402
BstSCI	CCNGG	1 cut(s)	53
BstV1I	GCAGC	1 cut(s)	62
BstV2I	GAAGAC	1 cut(s)	199
BstX2I	RGATCY	4 cut(s)	159, 281, 302, 460
BstYI	RGATCY	4 cut(s)	159, 281, 302, 460
BsuRI	GGCC	1 cut(s)	108
BtsCI	GGATG	1 cut(s)	37
BtsIMutI	CAGTG	1 cut(s)	354
Cfr10I	RCCGGY	1 cut(s)	66
Cfr13I	GGNCC	2 cut(s)	106, 330
Csp6I	GTAC	2 cut(s)	133, 369
CspAI	ACCGGT	1 cut(s)	66
CviJI	RGCY	5 cut(s)	53, 74, 108, 233, 392
CviKI_1	RGCY	5 cut(s)	53, 74, 108, 233, 392
CviQI	GTAC	2 cut(s)	133, 369
DdeI	CTNAG	1 cut(s)	92
DpnI	GATC	7 cut(s)	161, 191, 283, 291, 304, 339, 462
DpnII	GATC	7 cut(s)	159, 189, 281, 289, 302, 337, 460
DrdI	GACNNNNNNGTC	1 cut(s)	203
DseDI	GACNNNNNNGTC	1 cut(s)	203
Eco24I	GRGCYC	1 cut(s)	76
Eco47I	GGWCC	1 cut(s)	330
EcoO109I	RGGNCCY	1 cut(s)	106
EcoT38I	GRGCYC	1 cut(s)	76
FaiI	YATR	4 cut(s)	80, 117, 183, 389
FalI	AAGNNNNNCTT	2 cut(s)	191, 223
FaqI	GGGAC	1 cut(s)	70
Fnu4HI	GCNGC	1 cut(s)	51
FokI	GGATG	1 cut(s)	44
FriOI	GRGCYC	1 cut(s)	76
Fsp4HI	GCNGC	1 cut(s)	51
FspBI	CTAG	3 cut(s)	309, 366, 381
GluI	GCNGC	1 cut(s)	51
GsaI	CCCAGC	1 cut(s)	19
GsuI	CTGGAG	1 cut(s)	126
HaeIII	GGCC	1 cut(s)	108
HapII	CCGG	3 cut(s)	54, 67, 464
HinfI	GANTC	2 cut(s)	96, 151
HpaII	CCGG	3 cut(s)	54, 67, 464
HphI	GGTGA	1 cut(s)	461
Hpy188I	TCNGA	2 cut(s)	174, 264
Hpy188III	TCNNGA	6 cut(s)	143, 155, 220, 236, 287, 464
HpyAV	CCTTC	2 cut(s)	176, 247
HpyCH4III	ACNGT	1 cut(s)	180
HpyCH4IV	ACGT	2 cut(s)	204, 267
HpyCH4V	TGCA	1 cut(s)	473
HpyF3I	CTNAG	1 cut(s)	92
HpySE526I	ACGT	2 cut(s)	204, 267
Kpn2I	TCCGGA	1 cut(s)	463
Kzo9I	GATC	7 cut(s)	159, 189, 281, 289, 302, 337, 460
LmnI	GCTCC	2 cut(s)	4, 79
LpnPI	CCDG	8 cut(s)	29, 67, 80, 156, 233, 342, 408, 477
Lsp1109I	GCAGC	1 cut(s)	62
MaeI	CTAG	3 cut(s)	309, 366, 381
MaeII	ACGT	2 cut(s)	204, 267
MalI	GATC	7 cut(s)	161, 191, 283, 291, 304, 339, 462
MboI	GATC	7 cut(s)	159, 189, 281, 289, 302, 337, 460
MboII	GAAGA	1 cut(s)	199
MflI	RGATCY	4 cut(s)	159, 281, 302, 460
MhlI	GDGCHC	1 cut(s)	76
MluCI	AATT	3 cut(s)	257, 295, 384
MmeI	TCCRAC	1 cut(s)	455
MnlI	CCTC	7 cut(s)	22, 29, 96, 110, 187, 234, 236
MroI	TCCGGA	1 cut(s)	463
MroXI	GAANNNNTTC	1 cut(s)	206
MseI	TTAA	1 cut(s)	129
MspI	CCGG	3 cut(s)	54, 67, 464
MspR9I	CCNGG	1 cut(s)	55
NciI	CCSGG	1 cut(s)	55
NdeII	GATC	7 cut(s)	159, 189, 281, 289, 302, 337, 460
NlaIV	GGNNCC	4 cut(s)	75, 218, 304, 352
PdmI	GAANNNNTTC	1 cut(s)	206
PfeI	GAWTC	2 cut(s)	96, 151
PinAI	ACCGGT	1 cut(s)	66
PkrI	GCNGC	1 cut(s)	52
PshAI	GACNNNNGTC	1 cut(s)	402
Psp1406I	AACGTT	1 cut(s)	267
PspFI	CCCAGC	1 cut(s)	15
PspN4I	GGNNCC	4 cut(s)	75, 218, 304, 352
PspPI	GGNCC	2 cut(s)	106, 330
PsuI	RGATCY	4 cut(s)	159, 281, 302, 460
RsaI	GTAC	2 cut(s)	134, 370
RsaNI	GTAC	2 cut(s)	133, 369
SaqAI	TTAA	1 cut(s)	129
SatI	GCNGC	1 cut(s)	51
Sau3AI	GATC	7 cut(s)	159, 189, 281, 289, 302, 337, 460
Sau96I	GGNCC	2 cut(s)	106, 330
ScaI	AGTACT	1 cut(s)	370
ScrFI	CCNGG	1 cut(s)	55
SduI	GDGCHC	1 cut(s)	76
SetI	ASST	4 cut(s)	207, 228, 270, 332
SinI	GGWCC	1 cut(s)	330
SmlI	CTYRAG	2 cut(s)	101, 227
SmoI	CTYRAG	2 cut(s)	101, 227
SpeI	ACTAGT	2 cut(s)	308, 365
Sse9I	AATT	3 cut(s)	257, 295, 384
SsiI	CCGC	1 cut(s)	83
SspMI	CTAG	3 cut(s)	309, 366, 381
StyD4I	CCNGG	1 cut(s)	53
TaaI	ACNGT	1 cut(s)	180
TaiI	ACGT	2 cut(s)	207, 270
TaqI	TCGA	3 cut(s)	27, 192, 288
TaqII	GACCGA	1 cut(s)	392
TasI	AATT	3 cut(s)	257, 295, 384
TatI	WGTACW	1 cut(s)	368
TfiI	GAWTC	2 cut(s)	96, 151
Tru1I	TTAA	1 cut(s)	129
Tru9I	TTAA	1 cut(s)	129
TscAI	CASTG	1 cut(s)	361
TseI	GCWGC	1 cut(s)	50
TspDTI	ATGAA	1 cut(s)	158
TspRI	CASTG	1 cut(s)	361
VpaK11BI	GGWCC	1 cut(s)	330
XapI	RAATTY	1 cut(s)	257
XmnI	GAANNNNTTC	1 cut(s)	206
XspI	CTAG	3 cut(s)	309, 366, 381
ZrmI	AGTACT	1 cut(s)	370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.