Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000180

Physical Location & Seq

Genomic Coordinates Reverse (-)

66803840 .. 66805161

Gene Structure 1322 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ60456

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGAACCACGAACTCTGCAACTAATGGATCTTCAAACCCAGCAACACATGGAACTACAACAACAGCAACCAACCGAGGGGGGAGGAAGCAACCAAGCAGCCGGGAGTAGTGCCAACACGCCTATCAGGCCAACCAATAACCGGTGGGCTCCTACACCAGCTCAACTAAGAATCCTCCAGGAGCTTTACTACGACAGGGGGCTTAAAAACCCAAATCCAGAGCAGATACAGGGGATCTGTCTCCACCTGAAGCCGTATGGGCAGATCGAGAACAAGAACGTTTTCTTTTGGTTCCAGAACCTCAAGGCTCGTGAGAGTCAGAAGTTGAAGGAAATCCGGAACGTTCGGGTTGGTGGATCCCTCGATCTCAAATTTGGATCCACAAGTTCTACTGATGGTGGCAGATCCATCGATCTCAACTTCGGTTCCACCGATTCCACTGATGATGATGGATCGATCGATCTAACCCTTGGGTTACAATCATTCATGGAACGACGAGGAGGAGATCACCAGGAGGTCGAGACTCTTCCTCTGTTCCCTGAGCACGGAGAAAACATCCTTGGTAACCCGAAGACTACATCCGAGGGCGGTAGCTCATTTGGTTACTATTCCGGTGGCTCAGGCGGTTACAACAGTGGCTCTCACGTTTCTCTTGAGCTAAGCCTCAATCCTTCCGGAGCTGCTGACTTGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

231

Amino Acids

25.2

Weight (kDa)

5.12

Isoelectric Point (pI)

50.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	47 - 105	1.2e-08	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000180)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c19g0499991 RchiOBHm_Chr0c19g0500021 RchiOBHm_Chr0c19g0500131 RchiOBHm_Chr0c31g0501321 RchiOBHm_Chr0c31g0501441 RchiOBHm_Chr1g0365611 RchiOBHm_Chr1g0366061 RchiOBHm_Chr1g0367951 RchiOBHm_Chr1g0369471 RchiOBHm_Chr1g0377271 RchiOBHm_Chr1g0379021 RchiOBHm_Chr1g0379461 RchiOBHm_Chr1g0381431 RchiOBHm_Chr1g0383551 RchiOBHm_Chr1g0383621 RchiOBHm_Chr2g0120951 RchiOBHm_Chr2g0121321 RchiOBHm_Chr2g0121381 RchiOBHm_Chr2g0121801 RchiOBHm_Chr2g0121861 RchiOBHm_Chr2g0122211 RchiOBHm_Chr2g0122471 RchiOBHm_Chr2g0122511 RchiOBHm_Chr2g0122751 RchiOBHm_Chr2g0123361 RchiOBHm_Chr2g0124071 RchiOBHm_Chr2g0124341 RchiOBHm_Chr2g0124361 RchiOBHm_Chr2g0124511 RchiOBHm_Chr2g0124641 RchiOBHm_Chr2g0125051 RchiOBHm_Chr2g0125111 RchiOBHm_Chr2g0125641 RchiOBHm_Chr2g0125871 RchiOBHm_Chr2g0125901 RchiOBHm_Chr2g0126011 RchiOBHm_Chr2g0126291 RchiOBHm_Chr2g0126341 RchiOBHm_Chr2g0126611 RchiOBHm_Chr2g0126671 RchiOBHm_Chr2g0126701 RchiOBHm_Chr2g0127021 RchiOBHm_Chr2g0127071 RchiOBHm_Chr2g0127361 RchiOBHm_Chr2g0127691 RchiOBHm_Chr2g0128041 RchiOBHm_Chr2g0128051 RchiOBHm_Chr2g0128061 RchiOBHm_Chr2g0128141 RchiOBHm_Chr2g0128171 RchiOBHm_Chr2g0128181 RchiOBHm_Chr2g0128551 RchiOBHm_Chr2g0128991 RchiOBHm_Chr2g0130061 RchiOBHm_Chr2g0130391 RchiOBHm_Chr2g0130631 RchiOBHm_Chr2g0130921 RchiOBHm_Chr2g0132731 RchiOBHm_Chr2g0133461 RchiOBHm_Chr2g0133921 RchiOBHm_Chr2g0134031 RchiOBHm_Chr2g0134281 RchiOBHm_Chr2g0134351 RchiOBHm_Chr2g0135501 RchiOBHm_Chr2g0135821 RchiOBHm_Chr2g0135931 RchiOBHm_Chr2g0137501 RchiOBHm_Chr2g0139141 RchiOBHm_Chr2g0139511 RchiOBHm_Chr2g0142411 RchiOBHm_Chr2g0143261 RchiOBHm_Chr2g0144171 RchiOBHm_Chr2g0144741 RchiOBHm_Chr2g0144841 RchiOBHm_Chr2g0145021 RchiOBHm_Chr2g0145831 RchiOBHm_Chr2g0145881 RchiOBHm_Chr2g0146081 RchiOBHm_Chr2g0146141 RchiOBHm_Chr2g0146671 RchiOBHm_Chr2g0149001 RchiOBHm_Chr2g0151811 RchiOBHm_Chr2g0151821 RchiOBHm_Chr2g0151831 RchiOBHm_Chr2g0152051 RchiOBHm_Chr2g0154791 RchiOBHm_Chr2g0155541 RchiOBHm_Chr2g0160791 RchiOBHm_Chr2g0161631 RchiOBHm_Chr2g0162151 RchiOBHm_Chr2g0162751 RchiOBHm_Chr2g0166561 RchiOBHm_Chr2g0166751 RchiOBHm_Chr2g0168891 RchiOBHm_Chr2g0170211 RchiOBHm_Chr2g0170781 RchiOBHm_Chr2g0172831 RchiOBHm_Chr2g0174791 RchiOBHm_Chr3g0448081 RchiOBHm_Chr3g0449761 RchiOBHm_Chr3g0453291 RchiOBHm_Chr3g0456271 RchiOBHm_Chr3g0456461 RchiOBHm_Chr3g0458351 RchiOBHm_Chr3g0461411 RchiOBHm_Chr3g0461511 RchiOBHm_Chr3g0463871 RchiOBHm_Chr3g0467841 RchiOBHm_Chr3g0470081 RchiOBHm_Chr3g0470571 RchiOBHm_Chr7g0187061 RchiOBHm_Chr7g0187461 RchiOBHm_Chr7g0187681 RchiOBHm_Chr7g0189901 RchiOBHm_Chr7g0190271 RchiOBHm_Chr7g0193451 RchiOBHm_Chr7g0194081 RchiOBHm_Chr7g0195771 RchiOBHm_Chr7g0196301 RchiOBHm_Chr7g0196911
rosa_multiflora	Rmu_sc0000236.1_g000047 Rmu_sc0000284.1_g000007 Rmu_sc0000288.1_g000006 Rmu_sc0000507.1_g000017 Rmu_sc0000580.1_g000015 Rmu_sc0000663.1_g000011 Rmu_sc0000675.1_g000024 Rmu_sc0000693.1_g000072 Rmu_sc0000779.1_g000005 Rmu_sc0000851.1_g000015 Rmu_sc0000962.1_g000001 Rmu_sc0001493.1_g000055 Rmu_sc0001669.1_g000025 Rmu_sc0001891.1_g000051 Rmu_sc0001926.1_g000007 Rmu_sc0002082.1_g000025 Rmu_sc0002141.1_g000001 Rmu_sc0002141.1_g000004 Rmu_sc0002414.1_g000012 Rmu_sc0002557.1_g000022 Rmu_sc0002709.1_g000038 Rmu_sc0002897.1_g000004 Rmu_sc0002934.1_g000055 Rmu_sc0003692.1_g000017 Rmu_sc0004283.1_g000068 Rmu_sc0004598.1_g000010 Rmu_sc0004614.1_g000004 Rmu_sc0004805.1_g000006 Rmu_sc0005142.1_g000041 Rmu_sc0005777.1_g000001 Rmu_sc0006420.1_g000019 Rmu_sc0006803.1_g000016 Rmu_sc0007034.1_g000015 Rmu_sc0008079.1_g000017 Rmu_sc0008148.1_g000040 Rmu_sc0008608.1_g000007 Rmu_sc0008675.1_g000001 Rmu_sc0009663.1_g000001 Rmu_sc0010188.1_g000003 Rmu_sc0010739.1_g000005 Rmu_sc0016265.1_g000001 Rmu_sc0031757.1_g000001 Rmu_ssc0000087.1_g000024 Rmu_ssc0000438.1_g000029
rosa_roxburghii	Rroxscaffold_1G00003350
rosa_rugosa	Rorug03G0248400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	2 cut(s)	336, 674
AciI	CCGC	2 cut(s)	588, 624
AclI	AACGTT	2 cut(s)	279, 342
AclWI	GGATC	8 cut(s)	36, 242, 351, 364, 372, 385, 399, 460
AcsI	RAATTY	1 cut(s)	371
AcuI	CTGAAG	1 cut(s)	269
AfiI	CCNNNNNNNGG	3 cut(s)	77, 141, 545
AgeI	ACCGGT	1 cut(s)	141
AgsI	TTSAA	2 cut(s)	35, 328
AjnI	CCWGG	2 cut(s)	177, 510
AjuI	GAANNNNNNNTTGG	2 cut(s)	543, 575
AluBI	AGCT	5 cut(s)	161, 184, 594, 658, 680
AluI	AGCT	5 cut(s)	161, 184, 594, 658, 680
Alw21I	GWGCWC	1 cut(s)	546
Alw26I	GTCTC	2 cut(s)	245, 515
AlwI	GGATC	8 cut(s)	36, 242, 351, 364, 372, 385, 399, 460
Aor13HI	TCCGGA	2 cut(s)	336, 674
AoxI	GGCC	1 cut(s)	128
ApeKI	GCWGC	2 cut(s)	98, 680
ApoI	RAATTY	1 cut(s)	371
AsiGI	ACCGGT	1 cut(s)	141
Asp700I	GAANNNNTTC	1 cut(s)	281
AsuC2I	CCSGG	1 cut(s)	103
AsuHPI	GGTGA	1 cut(s)	500
BamHI	GGATCC	2 cut(s)	356, 377
BanII	GRGCYC	1 cut(s)	151
BauI	CACGAG	1 cut(s)	309
BbsI	GAAGAC	1 cut(s)	578
Bbv12I	GWGCWC	1 cut(s)	546
BbvI	GCAGC	2 cut(s)	110, 667
BccI	CCATC	3 cut(s)	389, 416, 443
BceAI	ACGGC	1 cut(s)	238
BcgI	CGANNNNNNTGC	2 cut(s)	391, 425
BciT130I	CCWGG	2 cut(s)	179, 512
BcnI	CCSGG	1 cut(s)	103
BcoDI	GTCTC	2 cut(s)	245, 515
BglI	GCCNNNNNGGC	2 cut(s)	127, 259
BisI	GCNGC	2 cut(s)	99, 681
BlpI	GCTNAGC	1 cut(s)	659
BlsI	GCNGC	2 cut(s)	100, 682
Bme1390I	CCNGG	3 cut(s)	103, 179, 512
BmiI	GGNNCC	6 cut(s)	6, 150, 293, 358, 379, 427
BmrFI	CCNGG	3 cut(s)	103, 179, 512
BpiI	GAAGAC	1 cut(s)	578
BpmI	CTGGAG	1 cut(s)	161
Bpu10I	CCTNAGC	2 cut(s)	540, 619
Bpu1102I	GCTNAGC	1 cut(s)	659
BpuEI	CTTGAG	2 cut(s)	287, 674
BpuMI	CCSGG	1 cut(s)	103
Bsa29I	ATCGAT	3 cut(s)	411, 455, 459
BsaJI	CCNNGG	4 cut(s)	75, 469, 559, 582
BsaWI	WCCGGW	4 cut(s)	141, 336, 611, 674
Bsc4I	CCNNNNNNNGG	3 cut(s)	77, 141, 545
Bse118I	RCCGGY	1 cut(s)	141
BseAI	TCCGGA	2 cut(s)	336, 674
BseBI	CCWGG	2 cut(s)	179, 512
BseCI	ATCGAT	3 cut(s)	411, 455, 459
BseDI	CCNNGG	4 cut(s)	75, 469, 559, 582
BseGI	GGATG	2 cut(s)	555, 578
BseLI	CCNNNNNNNGG	3 cut(s)	77, 141, 545
BseMII	CTCAG	2 cut(s)	531, 633
BseRI	GAGGAG	2 cut(s)	513, 516
BseXI	GCAGC	2 cut(s)	110, 667
BseYI	CCCAGC	1 cut(s)	39
Bsh1285I	CGRYCG	1 cut(s)	459
BshFI	GGCC	1 cut(s)	130
BshTI	ACCGGT	1 cut(s)	141
BshVI	ATCGAT	3 cut(s)	411, 455, 459
BsiEI	CGRYCG	1 cut(s)	459
BsiHKAI	GWGCWC	1 cut(s)	546
BsiSI	CCGG	5 cut(s)	102, 142, 337, 612, 675
BslI	CCNNNNNNNGG	3 cut(s)	77, 141, 545
BsmAI	GTCTC	2 cut(s)	245, 515
BsnI	GGCC	1 cut(s)	130
Bsp1286I	GDGCHC	2 cut(s)	151, 546
Bsp13I	TCCGGA	2 cut(s)	336, 674
Bsp1720I	GCTNAGC	1 cut(s)	659
BspACI	CCGC	2 cut(s)	588, 624
BspANI	GGCC	1 cut(s)	130
BspCNI	CTCAG	2 cut(s)	532, 632
BspDI	ATCGAT	3 cut(s)	411, 455, 459
BspEI	TCCGGA	2 cut(s)	336, 674
BspLI	GGNNCC	6 cut(s)	6, 150, 293, 358, 379, 427
BspPI	GGATC	8 cut(s)	36, 242, 351, 364, 372, 385, 399, 460
BsrFI	RCCGGY	1 cut(s)	141
BssAI	RCCGGY	1 cut(s)	141
BssECI	CCNNGG	4 cut(s)	75, 469, 559, 582
BssSI	CACGAG	1 cut(s)	309
BssT1I	CCWWGG	2 cut(s)	469, 559
Bst2BI	CACGAG	1 cut(s)	309
Bst2UI	CCWGG	2 cut(s)	179, 512
Bst4CI	ACNGT	1 cut(s)	635
Bst6I	CTCTTC	1 cut(s)	531
BstDEI	CTNAG	5 cut(s)	167, 540, 619, 659, 693
BstEII	GGTNACC	1 cut(s)	563
BstF5I	GGATG	2 cut(s)	555, 578
BstMAI	GTCTC	2 cut(s)	245, 515
BstMCI	CGRYCG	1 cut(s)	459
BstMWI	GCNNNNNNNGC	3 cut(s)	127, 259, 689
BstNI	CCWGG	2 cut(s)	179, 512
BstPI	GGTNACC	1 cut(s)	563
BstSCI	CCNGG	3 cut(s)	101, 177, 510
BstV1I	GCAGC	2 cut(s)	110, 667
BstV2I	GAAGAC	1 cut(s)	578
BstX2I	RGATCY	5 cut(s)	28, 234, 356, 377, 404
BstYI	RGATCY	5 cut(s)	28, 234, 356, 377, 404
Bsu15I	ATCGAT	3 cut(s)	411, 455, 459
BsuRI	GGCC	1 cut(s)	130
BsuTUI	ATCGAT	3 cut(s)	411, 455, 459
BtsCI	GGATG	2 cut(s)	555, 578
BtsIMutI	CAGTG	2 cut(s)	438, 640
Cfr10I	RCCGGY	1 cut(s)	141
ClaI	ATCGAT	3 cut(s)	411, 455, 459
CspAI	ACCGGT	1 cut(s)	141
CviAII	CATG	2 cut(s)	49, 487
DdeI	CTNAG	5 cut(s)	167, 540, 619, 659, 693
Eam1104I	CTCTTC	1 cut(s)	531
EarI	CTCTTC	1 cut(s)	531
Eco130I	CCWWGG	2 cut(s)	469, 559
Eco24I	GRGCYC	1 cut(s)	151
Eco57I	CTGAAG	1 cut(s)	269
Eco91I	GGTNACC	1 cut(s)	563
EcoO65I	GGTNACC	1 cut(s)	563
EcoRII	CCWGG	2 cut(s)	177, 510
EcoT14I	CCWWGG	2 cut(s)	469, 559
EcoT38I	GRGCYC	1 cut(s)	151
ErhI	CCWWGG	2 cut(s)	469, 559
FaeI	CATG	2 cut(s)	52, 490
FaiI	YATR	3 cut(s)	50, 258, 488
FatI	CATG	2 cut(s)	48, 486
Fnu4HI	GCNGC	2 cut(s)	99, 681
FokI	GGATG	2 cut(s)	542, 565
FriOI	GRGCYC	1 cut(s)	151
Fsp4HI	GCNGC	2 cut(s)	99, 681
GluI	GCNGC	2 cut(s)	99, 681
GsaI	CCCAGC	1 cut(s)	43
GsuI	CTGGAG	1 cut(s)	161
HaeIII	GGCC	1 cut(s)	130
HapII	CCGG	5 cut(s)	102, 142, 337, 612, 675
Hin1II	CATG	2 cut(s)	52, 490
HinfI	GANTC	4 cut(s)	171, 316, 434, 523
HpaII	CCGG	5 cut(s)	102, 142, 337, 612, 675
HphI	GGTGA	1 cut(s)	500
Hpy188I	TCNGA	2 cut(s)	321, 583
Hpy188III	TCNNGA	8 cut(s)	218, 268, 295, 311, 337, 520, 653, 675
Hpy99I	CGWCG	1 cut(s)	498
HpyAV	CCTTC	2 cut(s)	322, 681
HpyCH4III	ACNGT	1 cut(s)	635
HpyCH4IV	ACGT	3 cut(s)	279, 342, 645
HpyCH4V	TGCA	1 cut(s)	19
HpyF10VI	GCNNNNNNNGC	3 cut(s)	127, 259, 689
HpyF3I	CTNAG	5 cut(s)	167, 540, 619, 659, 693
HpySE526I	ACGT	3 cut(s)	279, 342, 645
Hsp92II	CATG	2 cut(s)	52, 490
Kpn2I	TCCGGA	2 cut(s)	336, 674
LmnI	GCTCC	3 cut(s)	154, 181, 677
Lsp1109I	GCAGC	2 cut(s)	110, 667
MaeII	ACGT	3 cut(s)	279, 342, 645
MaeIII	GTNAC	4 cut(s)	474, 563, 602, 626
MboII	GAAGA	3 cut(s)	23, 518, 583
MflI	RGATCY	5 cut(s)	28, 234, 356, 377, 404
MhlI	GDGCHC	2 cut(s)	151, 546
MluCI	AATT	1 cut(s)	371
MlyI	GAGTC	2 cut(s)	325, 517
MroI	TCCGGA	2 cut(s)	336, 674
MroXI	GAANNNNTTC	1 cut(s)	281
MseI	TTAA	1 cut(s)	204
MspI	CCGG	5 cut(s)	102, 142, 337, 612, 675
MspR9I	CCNGG	3 cut(s)	103, 179, 512
MvaI	CCWGG	2 cut(s)	179, 512
MwoI	GCNNNNNNNGC	3 cut(s)	127, 259, 689
NciI	CCSGG	1 cut(s)	103
NlaIII	CATG	2 cut(s)	52, 490
NlaIV	GGNNCC	6 cut(s)	6, 150, 293, 358, 379, 427
PcsI	WCGNNNNNNNCGW	1 cut(s)	429
PdmI	GAANNNNTTC	1 cut(s)	281
PfeI	GAWTC	2 cut(s)	171, 434
PfoI	TCCNGGA	1 cut(s)	177
PinAI	ACCGGT	1 cut(s)	141
PkrI	GCNGC	2 cut(s)	100, 682
Ple19I	CGATCG	1 cut(s)	459
PleI	GAGTC	2 cut(s)	324, 517
PpsI	GAGTC	2 cut(s)	324, 517
Psp1406I	AACGTT	2 cut(s)	279, 342
Psp6I	CCWGG	2 cut(s)	177, 510
PspEI	GGTNACC	1 cut(s)	563
PspFI	CCCAGC	1 cut(s)	39
PspGI	CCWGG	2 cut(s)	177, 510
PspN4I	GGNNCC	6 cut(s)	6, 150, 293, 358, 379, 427
PsuI	RGATCY	5 cut(s)	28, 234, 356, 377, 404
PvuI	CGATCG	1 cut(s)	459
SaqAI	TTAA	1 cut(s)	204
SatI	GCNGC	2 cut(s)	99, 681
SchI	GAGTC	2 cut(s)	325, 517
ScrFI	CCNGG	3 cut(s)	103, 179, 512
SduI	GDGCHC	2 cut(s)	151, 546
SmlI	CTYRAG	2 cut(s)	302, 653
SmoI	CTYRAG	2 cut(s)	302, 653
Sse9I	AATT	1 cut(s)	371
SsiI	CCGC	2 cut(s)	588, 624
StyD4I	CCNGG	3 cut(s)	101, 177, 510
StyI	CCWWGG	2 cut(s)	469, 559
TaaI	ACNGT	1 cut(s)	635
TaiI	ACGT	3 cut(s)	282, 345, 648
TaqI	TCGA	6 cut(s)	267, 363, 411, 455, 459, 519
TasI	AATT	1 cut(s)	371
TfiI	GAWTC	2 cut(s)	171, 434
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TscAI	CASTG	2 cut(s)	445, 640
TseI	GCWGC	2 cut(s)	98, 680
TspDTI	ATGAA	1 cut(s)	475
TspGWI	ACGGA	1 cut(s)	561
TspRI	CASTG	2 cut(s)	445, 640
XapI	RAATTY	1 cut(s)	371
XmnI	GAANNNNTTC	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.