Rmu_sc0002709.1_g000038

Homeodomain

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002709.1
Physical Location & Seq
Forward (+)
133287 .. 134066
780 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002709.1_g000038.1.cds

Sequence Viewer

Length: 780 bp
atggaaccacgaactctggaactaatggagcttcaaacccagcaacaaatggaactacaagcccagcaaccaaccgaggagggaggaagcacccaagcagccgggagtagtgccaacacgcctatcaggccgactactaaccggtggactcccacaccagctcaactaagaatccttcaggggctctactatgacaagggtcacaagtacccaactccagagcagattcaagagatctgtcttcatctgaaaccgtatgggcagatcgaggacaagaacgtcttcttttggtttcagaacctcaaggctcgtgagaggcagaagttgaaggaatttcggaacgttcgggttggtggatctctcgatctcaaatttggatccacaagttctacagatgatggtaggtccattgatctcaactttgattccactggttctactggtgatgatggatcaatcgatctaacttttgggtcatgcgtcggctatggtgttgacccatattcctcctcacccttcaacgctaatatcaatactacctcctatggcacagcaggaggacaaacttccatggatcaacggggaggagatcaccaggaggtcgaaactcttcccctgttcccagtgcacggtgaggacgtccttggagacccgaagactacttctgacggaggtagcgcatatggctactattccggtggctcaggcggttacaacagtggctctcacgtttctcttgagctcagcctcaatccttccggagctgctgacttggcttag

Protein Analysis

259

Amino Acids

28.01

Weight (kDa)

4.72

Isoelectric Point (pI)

41.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000180)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr0c19g0499991 RchiOBHm_Chr0c19g0500021 RchiOBHm_Chr0c19g0500131 RchiOBHm_Chr0c31g0501321 RchiOBHm_Chr0c31g0501441 RchiOBHm_Chr1g0365611 RchiOBHm_Chr1g0366061 RchiOBHm_Chr1g0367951 RchiOBHm_Chr1g0369471 RchiOBHm_Chr1g0377271 RchiOBHm_Chr1g0379021 RchiOBHm_Chr1g0379461 RchiOBHm_Chr1g0381431 RchiOBHm_Chr1g0383551 RchiOBHm_Chr1g0383621 RchiOBHm_Chr2g0120951 RchiOBHm_Chr2g0121321 RchiOBHm_Chr2g0121381 RchiOBHm_Chr2g0121801 RchiOBHm_Chr2g0121861 RchiOBHm_Chr2g0122211 RchiOBHm_Chr2g0122471 RchiOBHm_Chr2g0122511 RchiOBHm_Chr2g0122751 RchiOBHm_Chr2g0123361 RchiOBHm_Chr2g0124071 RchiOBHm_Chr2g0124341 RchiOBHm_Chr2g0124361 RchiOBHm_Chr2g0124511 RchiOBHm_Chr2g0124641 RchiOBHm_Chr2g0125051 RchiOBHm_Chr2g0125111 RchiOBHm_Chr2g0125641 RchiOBHm_Chr2g0125871 RchiOBHm_Chr2g0125901 RchiOBHm_Chr2g0126011 RchiOBHm_Chr2g0126291 RchiOBHm_Chr2g0126341 RchiOBHm_Chr2g0126611 RchiOBHm_Chr2g0126671 RchiOBHm_Chr2g0126701 RchiOBHm_Chr2g0127021 RchiOBHm_Chr2g0127071 RchiOBHm_Chr2g0127361 RchiOBHm_Chr2g0127691 RchiOBHm_Chr2g0128041 RchiOBHm_Chr2g0128051 RchiOBHm_Chr2g0128061 RchiOBHm_Chr2g0128141 RchiOBHm_Chr2g0128171 RchiOBHm_Chr2g0128181 RchiOBHm_Chr2g0128551 RchiOBHm_Chr2g0128991 RchiOBHm_Chr2g0130061 RchiOBHm_Chr2g0130391 RchiOBHm_Chr2g0130631 RchiOBHm_Chr2g0130921 RchiOBHm_Chr2g0132731 RchiOBHm_Chr2g0133461 RchiOBHm_Chr2g0133921 RchiOBHm_Chr2g0134031 RchiOBHm_Chr2g0134281 RchiOBHm_Chr2g0134351 RchiOBHm_Chr2g0135501 RchiOBHm_Chr2g0135821 RchiOBHm_Chr2g0135931 RchiOBHm_Chr2g0137501 RchiOBHm_Chr2g0139141 RchiOBHm_Chr2g0139511 RchiOBHm_Chr2g0142411 RchiOBHm_Chr2g0143261 RchiOBHm_Chr2g0144171 RchiOBHm_Chr2g0144741 RchiOBHm_Chr2g0144841 RchiOBHm_Chr2g0145021 RchiOBHm_Chr2g0145831 RchiOBHm_Chr2g0145881 RchiOBHm_Chr2g0146081 RchiOBHm_Chr2g0146141 RchiOBHm_Chr2g0146671 RchiOBHm_Chr2g0149001 RchiOBHm_Chr2g0151811 RchiOBHm_Chr2g0151821 RchiOBHm_Chr2g0151831 RchiOBHm_Chr2g0152051 RchiOBHm_Chr2g0154791 RchiOBHm_Chr2g0155541 RchiOBHm_Chr2g0160791 RchiOBHm_Chr2g0161631 RchiOBHm_Chr2g0162151 RchiOBHm_Chr2g0162751 RchiOBHm_Chr2g0166561 RchiOBHm_Chr2g0166751 RchiOBHm_Chr2g0168891 RchiOBHm_Chr2g0170211 RchiOBHm_Chr2g0170781 RchiOBHm_Chr2g0172831 RchiOBHm_Chr2g0174791 RchiOBHm_Chr3g0448081 RchiOBHm_Chr3g0449761 RchiOBHm_Chr3g0453291 RchiOBHm_Chr3g0456271 RchiOBHm_Chr3g0456461 RchiOBHm_Chr3g0458351 RchiOBHm_Chr3g0461411 RchiOBHm_Chr3g0461511 RchiOBHm_Chr3g0463871 RchiOBHm_Chr3g0467841 RchiOBHm_Chr3g0470081 RchiOBHm_Chr3g0470571 RchiOBHm_Chr7g0187061 RchiOBHm_Chr7g0187461 RchiOBHm_Chr7g0187681 RchiOBHm_Chr7g0189901 RchiOBHm_Chr7g0190271 RchiOBHm_Chr7g0193451 RchiOBHm_Chr7g0194081 RchiOBHm_Chr7g0195771 RchiOBHm_Chr7g0196301 RchiOBHm_Chr7g0196911
rosa_multiflora Rmu_sc0000236.1_g000047 Rmu_sc0000284.1_g000007 Rmu_sc0000288.1_g000006 Rmu_sc0000507.1_g000017 Rmu_sc0000580.1_g000015 Rmu_sc0000663.1_g000011 Rmu_sc0000675.1_g000024 Rmu_sc0000693.1_g000072 Rmu_sc0000779.1_g000005 Rmu_sc0000851.1_g000015 Rmu_sc0000962.1_g000001 Rmu_sc0001493.1_g000055 Rmu_sc0001669.1_g000025 Rmu_sc0001891.1_g000051 Rmu_sc0001926.1_g000007 Rmu_sc0002082.1_g000025 Rmu_sc0002141.1_g000001 Rmu_sc0002141.1_g000004 Rmu_sc0002414.1_g000012 Rmu_sc0002557.1_g000022 Rmu_sc0002709.1_g000038 Rmu_sc0002897.1_g000004 Rmu_sc0002934.1_g000055 Rmu_sc0003692.1_g000017 Rmu_sc0004283.1_g000068 Rmu_sc0004598.1_g000010 Rmu_sc0004614.1_g000004 Rmu_sc0004805.1_g000006 Rmu_sc0005142.1_g000041 Rmu_sc0005777.1_g000001 Rmu_sc0006420.1_g000019 Rmu_sc0006803.1_g000016 Rmu_sc0007034.1_g000015 Rmu_sc0008079.1_g000017 Rmu_sc0008148.1_g000040 Rmu_sc0008608.1_g000007 Rmu_sc0008675.1_g000001 Rmu_sc0009663.1_g000001 Rmu_sc0010188.1_g000003 Rmu_sc0010739.1_g000005 Rmu_sc0016265.1_g000001 Rmu_sc0031757.1_g000001 Rmu_ssc0000087.1_g000024 Rmu_ssc0000438.1_g000029
rosa_roxburghii Rroxscaffold_1G00003350
rosa_rugosa Rorug03G0248400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 278
AatII GACGTC 1 cut(s) 642
AccIII TCCGGA 1 cut(s) 758
AciI CCGC 1 cut(s) 708
AclI AACGTT 1 cut(s) 342
AclWI GGATC 5 cut(s) 364, 372, 385, 460, 582
AcsI RAATTY 2 cut(s) 332, 371
AcuI CTGAAG 1 cut(s) 161
AcyI GRCGYC 1 cut(s) 639
AfaI GTAC 1 cut(s) 209
AfiI CCNNNNNNNGG 1 cut(s) 629
AgeI ACCGGT 1 cut(s) 141
AgsI TTSAA 4 cut(s) 35, 230, 328, 520
AjnI CCWGG 1 cut(s) 594
AluBI AGCT 4 cut(s) 31, 161, 742, 764
AluI AGCT 4 cut(s) 31, 161, 742, 764
Alw21I GWGCWC 2 cut(s) 630, 744
Alw26I GTCTC 1 cut(s) 642
Alw44I GTGCAC 1 cut(s) 626
AlwI GGATC 5 cut(s) 364, 372, 385, 460, 582
Aor13HI TCCGGA 1 cut(s) 758
AoxI GGCC 1 cut(s) 128
ApaLI GTGCAC 1 cut(s) 626
ApeKI GCWGC 2 cut(s) 98, 764
ApoI RAATTY 2 cut(s) 332, 371
AsiGI ACCGGT 1 cut(s) 141
Asp700I GAANNNNTTC 2 cut(s) 281, 609
AspLEI GCGC 1 cut(s) 680
AspS9I GGNCC 1 cut(s) 405
AsuC2I CCSGG 1 cut(s) 103
AsuHPI GGTGA 4 cut(s) 455, 504, 584, 644
AvaII GGWCC 1 cut(s) 405
BaeGI GKGCMC 1 cut(s) 630
BamHI GGATCC 1 cut(s) 377
BanII GRGCYC 2 cut(s) 186, 744
BauI CACGAG 1 cut(s) 309
BbsI GAAGAC 3 cut(s) 233, 274, 662
Bbv12I GWGCWC 2 cut(s) 630, 744
BbvI GCAGC 2 cut(s) 110, 751
BccI CCATC 2 cut(s) 392, 443
BciT130I CCWGG 1 cut(s) 596
BcnI CCSGG 1 cut(s) 103
BcoDI GTCTC 1 cut(s) 642
BfmI CTRYAG 1 cut(s) 390
BglI GCCNNNNNGGC 1 cut(s) 127
BglII AGATCT 1 cut(s) 234
BisI GCNGC 2 cut(s) 99, 765
BlpI GCTNAGC 1 cut(s) 743
BlsI GCNGC 2 cut(s) 100, 766
Bme1390I CCNGG 2 cut(s) 103, 596
Bme18I GGWCC 1 cut(s) 405
BmgT120I GGNCC 1 cut(s) 405
BmiI GGNNCC 2 cut(s) 6, 379
BmrFI CCNGG 2 cut(s) 103, 596
BmrI ACTGGG 1 cut(s) 617
BmuI ACTGGG 1 cut(s) 617
BoxI GACNNNNGTC 1 cut(s) 198
BpiI GAAGAC 3 cut(s) 233, 274, 662
BpmI CTGGAG 1 cut(s) 201
Bpu10I CCTNAGC 1 cut(s) 703
Bpu1102I GCTNAGC 1 cut(s) 743
BpuEI CTTGAG 2 cut(s) 287, 758
BpuMI CCSGG 1 cut(s) 103
Bsa29I ATCGAT 1 cut(s) 459
BsaHI GRCGYC 1 cut(s) 639
BsaI GGTCTC 1 cut(s) 642
BsaJI CCNNGG 3 cut(s) 75, 570, 643
BsaWI WCCGGW 3 cut(s) 141, 695, 758
Bsc4I CCNNNNNNNGG 1 cut(s) 629
Bse118I RCCGGY 1 cut(s) 141
Bse1I ACTGG 3 cut(s) 436, 445, 623
BseAI TCCGGA 1 cut(s) 758
BseBI CCWGG 1 cut(s) 596
BseCI ATCGAT 1 cut(s) 459
BseDI CCNNGG 3 cut(s) 75, 570, 643
BseLI CCNNNNNNNGG 1 cut(s) 629
BseMII CTCAG 2 cut(s) 717, 757
BseNI ACTGG 3 cut(s) 436, 445, 623
BseRI GAGGAG 3 cut(s) 92, 499, 600
BseSI GKGCMC 1 cut(s) 630
BseXI GCAGC 2 cut(s) 110, 751
BseYI CCCAGC 2 cut(s) 39, 63
BshFI GGCC 1 cut(s) 130
BshTI ACCGGT 1 cut(s) 141
BshVI ATCGAT 1 cut(s) 459
BsiHKAI GWGCWC 2 cut(s) 630, 744
BsiSI CCGG 4 cut(s) 102, 142, 696, 759
BslI CCNNNNNNNGG 1 cut(s) 629
BsmAI GTCTC 1 cut(s) 642
BsnI GGCC 1 cut(s) 130
Bso31I GGTCTC 1 cut(s) 642
Bsp1286I GDGCHC 3 cut(s) 186, 630, 744
Bsp13I TCCGGA 1 cut(s) 758
Bsp1720I GCTNAGC 1 cut(s) 743
Bsp19I CCATGG 1 cut(s) 570
BspACI CCGC 1 cut(s) 708
BspANI GGCC 1 cut(s) 130
BspCNI CTCAG 2 cut(s) 716, 756
BspDI ATCGAT 1 cut(s) 459
BspEI TCCGGA 1 cut(s) 758
BspLI GGNNCC 2 cut(s) 6, 379
BspPI GGATC 5 cut(s) 364, 372, 385, 460, 582
BspTNI GGTCTC 1 cut(s) 642
BsrFI RCCGGY 1 cut(s) 141
BsrI ACTGG 3 cut(s) 436, 445, 623
BssAI RCCGGY 1 cut(s) 141
BssECI CCNNGG 3 cut(s) 75, 570, 643
BssNI GRCGYC 1 cut(s) 639
BssSI CACGAG 1 cut(s) 309
BssT1I CCWWGG 2 cut(s) 570, 643
Bst2BI CACGAG 1 cut(s) 309
Bst2UI CCWGG 1 cut(s) 596
Bst4CI ACNGT 3 cut(s) 255, 632, 719
Bst6I CTCTTC 1 cut(s) 615
BstACI GRCGYC 1 cut(s) 639
BstDEI CTNAG 4 cut(s) 167, 703, 743, 777
BstDSI CCRYGG 1 cut(s) 570
BstHHI GCGC 1 cut(s) 680
BstMAI GTCTC 1 cut(s) 642
BstMWI GCNNNNNNNGC 3 cut(s) 127, 684, 773
BstNI CCWGG 1 cut(s) 596
BstPAI GACNNNNGTC 1 cut(s) 198
BstSCI CCNGG 2 cut(s) 101, 594
BstSFI CTRYAG 1 cut(s) 390
BstSLI GKGCMC 1 cut(s) 630
BstV1I GCAGC 2 cut(s) 110, 751
BstV2I GAAGAC 3 cut(s) 233, 274, 662
BstX2I RGATCY 3 cut(s) 234, 356, 377
BstYI RGATCY 3 cut(s) 234, 356, 377
Bsu15I ATCGAT 1 cut(s) 459
BsuRI GGCC 1 cut(s) 130
BsuTUI ATCGAT 1 cut(s) 459
BtgI CCRYGG 1 cut(s) 570
BtsIMutI CAGTG 3 cut(s) 429, 630, 724
CfoI GCGC 1 cut(s) 680
Cfr10I RCCGGY 1 cut(s) 141
Cfr13I GGNCC 1 cut(s) 405
ClaI ATCGAT 1 cut(s) 459
CseI GACGC 1 cut(s) 469
Csp6I GTAC 1 cut(s) 208
CspAI ACCGGT 1 cut(s) 141
CviAII CATG 2 cut(s) 477, 571
CviQI GTAC 1 cut(s) 208
DdeI CTNAG 4 cut(s) 167, 703, 743, 777
DrdI GACNNNNNNGTC 1 cut(s) 278
DseDI GACNNNNNNGTC 1 cut(s) 278
Eam1104I CTCTTC 1 cut(s) 615
EarI CTCTTC 1 cut(s) 615
Ecl136II GAGCTC 1 cut(s) 742
Eco130I CCWWGG 2 cut(s) 570, 643
Eco24I GRGCYC 2 cut(s) 186, 744
Eco31I GGTCTC 1 cut(s) 642
Eco47I GGWCC 1 cut(s) 405
Eco53kI GAGCTC 1 cut(s) 742
Eco57I CTGAAG 1 cut(s) 161
EcoICRI GAGCTC 1 cut(s) 742
EcoRII CCWGG 1 cut(s) 594
EcoT14I CCWWGG 2 cut(s) 570, 643
EcoT38I GRGCYC 2 cut(s) 186, 744
ErhI CCWWGG 2 cut(s) 570, 643
FaeI CATG 2 cut(s) 480, 574
FaiI YATR 9 cut(s) 192, 258, 478, 489, 502, 546, 572, 682, 684
FalI AAGNNNNNCTT 2 cut(s) 266, 298
FatI CATG 2 cut(s) 476, 570
FauNDI CATATG 1 cut(s) 682
Fnu4HI GCNGC 2 cut(s) 99, 765
FriOI GRGCYC 2 cut(s) 186, 744
Fsp4HI GCNGC 2 cut(s) 99, 765
GlaI GCGC 1 cut(s) 679
GluI GCNGC 2 cut(s) 99, 765
GsaI CCCAGC 2 cut(s) 43, 67
GsuI CTGGAG 1 cut(s) 201
HaeIII GGCC 1 cut(s) 130
HapII CCGG 4 cut(s) 102, 142, 696, 759
HgaI GACGC 1 cut(s) 469
HhaI GCGC 1 cut(s) 680
Hin1I GRCGYC 1 cut(s) 639
Hin1II CATG 2 cut(s) 480, 574
Hin6I GCGC 1 cut(s) 678
HinP1I GCGC 1 cut(s) 678
HincII GTYRAC 1 cut(s) 496
HindII GTYRAC 1 cut(s) 496
HinfI GANTC 4 cut(s) 148, 171, 226, 425
HpaII CCGG 4 cut(s) 102, 142, 696, 759
HphI GGTGA 4 cut(s) 455, 504, 584, 644
Hpy166II GTNNAC 3 cut(s) 147, 496, 628
Hpy188I TCNGA 4 cut(s) 249, 297, 339, 667
Hpy188III TCNNGA 7 cut(s) 17, 218, 230, 311, 362, 737, 759
Hpy8I GTNNAC 3 cut(s) 147, 496, 628
Hpy99I CGWCG 1 cut(s) 485
HpyAV CCTTC 4 cut(s) 185, 322, 526, 765
HpyCH4III ACNGT 3 cut(s) 255, 632, 719
HpyCH4IV ACGT 4 cut(s) 279, 342, 639, 729
HpyCH4V TGCA 1 cut(s) 628
HpyF10VI GCNNNNNNNGC 3 cut(s) 127, 684, 773
HpyF3I CTNAG 4 cut(s) 167, 703, 743, 777
HpySE526I ACGT 4 cut(s) 279, 342, 639, 729
Hsp92I GRCGYC 1 cut(s) 639
Hsp92II CATG 2 cut(s) 480, 574
HspAI GCGC 1 cut(s) 678
Kpn2I TCCGGA 1 cut(s) 758
LmnI GCTCC 2 cut(s) 28, 761
Lsp1109I GCAGC 2 cut(s) 110, 751
MaeII ACGT 4 cut(s) 279, 342, 639, 729
MaeIII GTNAC 2 cut(s) 200, 710
MboII GAAGA 4 cut(s) 233, 274, 602, 667
MflI RGATCY 3 cut(s) 234, 356, 377
MhlI GDGCHC 3 cut(s) 186, 630, 744
MluCI AATT 2 cut(s) 332, 371
MlyI GAGTC 1 cut(s) 142
MroI TCCGGA 1 cut(s) 758
MroXI GAANNNNTTC 2 cut(s) 281, 609
MspI CCGG 4 cut(s) 102, 142, 696, 759
MspR9I CCNGG 2 cut(s) 103, 596
MvaI CCWGG 1 cut(s) 596
MwoI GCNNNNNNNGC 3 cut(s) 127, 684, 773
NciI CCSGG 1 cut(s) 103
NcoI CCATGG 1 cut(s) 570
NdeI CATATG 1 cut(s) 682
NlaIII CATG 2 cut(s) 480, 574
NlaIV GGNNCC 2 cut(s) 6, 379
NmuCI GTSAC 1 cut(s) 200
PcsI WCGNNNNNNNCGW 1 cut(s) 636
PdmI GAANNNNTTC 2 cut(s) 281, 609
PfeI GAWTC 3 cut(s) 171, 226, 425
PinAI ACCGGT 1 cut(s) 141
PkrI GCNGC 2 cut(s) 100, 766
PleI GAGTC 1 cut(s) 142
PpsI GAGTC 1 cut(s) 142
PshAI GACNNNNGTC 1 cut(s) 198
Psp124BI GAGCTC 1 cut(s) 744
Psp1406I AACGTT 1 cut(s) 342
Psp6I CCWGG 1 cut(s) 594
PspFI CCCAGC 2 cut(s) 39, 63
PspGI CCWGG 1 cut(s) 594
PspN4I GGNNCC 2 cut(s) 6, 379
PspPI GGNCC 1 cut(s) 405
PsuI RGATCY 3 cut(s) 234, 356, 377
RsaI GTAC 1 cut(s) 209
RsaNI GTAC 1 cut(s) 208
SacI GAGCTC 1 cut(s) 744
SatI GCNGC 2 cut(s) 99, 765
Sau96I GGNCC 1 cut(s) 405
SchI GAGTC 1 cut(s) 142
ScrFI CCNGG 2 cut(s) 103, 596
SduI GDGCHC 3 cut(s) 186, 630, 744
SfcI CTRYAG 1 cut(s) 390
SinI GGWCC 1 cut(s) 405
SmlI CTYRAG 2 cut(s) 302, 737
SmoI CTYRAG 2 cut(s) 302, 737
Sse9I AATT 2 cut(s) 332, 371
SsiI CCGC 1 cut(s) 708
SstI GAGCTC 1 cut(s) 744
StyD4I CCNGG 2 cut(s) 101, 594
StyI CCWWGG 2 cut(s) 570, 643
TaaI ACNGT 3 cut(s) 255, 632, 719
TaiI ACGT 4 cut(s) 282, 345, 642, 732
TaqI TCGA 4 cut(s) 267, 363, 459, 603
TasI AATT 2 cut(s) 332, 371
TfiI GAWTC 3 cut(s) 171, 226, 425
TscAI CASTG 3 cut(s) 436, 630, 724
TseFI GTSAC 1 cut(s) 200
TseI GCWGC 2 cut(s) 98, 764
Tsp45I GTSAC 1 cut(s) 200
TspDTI ATGAA 1 cut(s) 233
TspGWI ACGGA 1 cut(s) 684
TspRI CASTG 3 cut(s) 436, 630, 724
VneI GTGCAC 1 cut(s) 626
VpaK11BI GGWCC 1 cut(s) 405
XapI RAATTY 2 cut(s) 332, 371
XmnI GAANNNNTTC 2 cut(s) 281, 609
ZraI GACGTC 1 cut(s) 640
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.