Homeodomain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 151 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 263 |
| AatII | GACGTC | 1 cut(s) | 627 |
| Acc36I | ACCTGC | 1 cut(s) | 151 |
| AccBSI | CCGCTC | 1 cut(s) | 52 |
| AccI | GTMKAC | 1 cut(s) | 116 |
| AciI | CCGC | 3 cut(s) | 46, 50, 693 |
| AclWI | GGATC | 5 cut(s) | 12, 349, 357, 370, 445 |
| AcoI | YGGCCR | 1 cut(s) | 47 |
| AcsI | RAATTY | 2 cut(s) | 317, 355 |
| AcuI | CTGAAG | 1 cut(s) | 146 |
| AcvI | CACGTG | 1 cut(s) | 464 |
| AcyI | GRCGYC | 1 cut(s) | 624 |
| AfaI | GTAC | 1 cut(s) | 520 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 126, 614 |
| AflIII | ACRYGT | 1 cut(s) | 463 |
| AgsI | TTSAA | 5 cut(s) | 29, 215, 313, 423, 505 |
| AjnI | CCWGG | 2 cut(s) | 86, 579 |
| AluBI | AGCT | 4 cut(s) | 21, 727, 749, 761 |
| AluI | AGCT | 4 cut(s) | 21, 727, 749, 761 |
| Alw21I | GWGCWC | 2 cut(s) | 615, 729 |
| Alw26I | GTCTC | 1 cut(s) | 584 |
| Alw44I | GTGCAC | 1 cut(s) | 611 |
| AlwI | GGATC | 5 cut(s) | 12, 349, 357, 370, 445 |
| AoxI | GGCC | 1 cut(s) | 47 |
| ApaLI | GTGCAC | 1 cut(s) | 611 |
| ApeKI | GCWGC | 1 cut(s) | 83 |
| ApoI | RAATTY | 2 cut(s) | 317, 355 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 266 |
| AspS9I | GGNCC | 1 cut(s) | 390 |
| AsuHPI | GGTGA | 4 cut(s) | 440, 489, 569, 629 |
| AvaII | GGWCC | 1 cut(s) | 390 |
| BaeGI | GKGCMC | 2 cut(s) | 197, 615 |
| BamHI | GGATCC | 1 cut(s) | 362 |
| BanII | GRGCYC | 2 cut(s) | 171, 729 |
| BauI | CACGAG | 1 cut(s) | 294 |
| BbrPI | CACGTG | 1 cut(s) | 464 |
| BbsI | GAAGAC | 2 cut(s) | 218, 259 |
| Bbv12I | GWGCWC | 2 cut(s) | 615, 729 |
| BbvI | GCAGC | 1 cut(s) | 95 |
| BccI | CCATC | 3 cut(s) | 377, 428, 748 |
| BciT130I | CCWGG | 2 cut(s) | 88, 581 |
| BcoDI | GTCTC | 1 cut(s) | 584 |
| BfaI | CTAG | 1 cut(s) | 758 |
| BfuAI | ACCTGC | 1 cut(s) | 151 |
| BglII | AGATCT | 1 cut(s) | 219 |
| BisI | GCNGC | 3 cut(s) | 47, 50, 84 |
| BlpI | GCTNAGC | 1 cut(s) | 728 |
| BlsI | GCNGC | 3 cut(s) | 48, 51, 85 |
| BmcAI | AGTACT | 1 cut(s) | 520 |
| Bme1390I | CCNGG | 2 cut(s) | 88, 581 |
| Bme18I | GGWCC | 1 cut(s) | 390 |
| BmgT120I | GGNCC | 1 cut(s) | 390 |
| BmiI | GGNNCC | 3 cut(s) | 278, 364, 412 |
| BmrFI | CCNGG | 2 cut(s) | 88, 581 |
| BpiI | GAAGAC | 2 cut(s) | 218, 259 |
| BpmI | CTGGAG | 2 cut(s) | 186, 765 |
| Bpu10I | CCTNAGC | 1 cut(s) | 688 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 728 |
| BpuEI | CTTGAG | 3 cut(s) | 63, 272, 743 |
| Bsa29I | ATCGAT | 1 cut(s) | 444 |
| BsaAI | YACGTR | 1 cut(s) | 464 |
| BsaHI | GRCGYC | 1 cut(s) | 624 |
| BsaJI | CCNNGG | 3 cut(s) | 454, 628, 651 |
| BsaWI | WCCGGW | 2 cut(s) | 126, 680 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 473, 503 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 126, 614 |
| Bse1I | ACTGG | 2 cut(s) | 430, 516 |
| BseBI | CCWGG | 2 cut(s) | 88, 581 |
| BseCI | ATCGAT | 1 cut(s) | 444 |
| BseDI | CCNNGG | 3 cut(s) | 454, 628, 651 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 126, 614 |
| BseMII | CTCAG | 2 cut(s) | 702, 742 |
| BseNI | ACTGG | 2 cut(s) | 430, 516 |
| BseRI | GAGGAG | 2 cut(s) | 582, 585 |
| BseSI | GKGCMC | 2 cut(s) | 197, 615 |
| BseX3I | CGGCCG | 1 cut(s) | 47 |
| BseXI | GCAGC | 1 cut(s) | 95 |
| Bsh1285I | CGRYCG | 1 cut(s) | 50 |
| BshFI | GGCC | 1 cut(s) | 49 |
| BshVI | ATCGAT | 1 cut(s) | 444 |
| BsiEI | CGRYCG | 1 cut(s) | 50 |
| BsiHKAI | GWGCWC | 2 cut(s) | 615, 729 |
| BsiSI | CCGG | 2 cut(s) | 127, 681 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 126, 614 |
| BsmAI | GTCTC | 1 cut(s) | 584 |
| BsnI | GGCC | 1 cut(s) | 49 |
| Bsp1286I | GDGCHC | 4 cut(s) | 171, 197, 615, 729 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 728 |
| BspACI | CCGC | 3 cut(s) | 46, 50, 693 |
| BspANI | GGCC | 1 cut(s) | 49 |
| BspCNI | CTCAG | 2 cut(s) | 701, 741 |
| BspDI | ATCGAT | 1 cut(s) | 444 |
| BspLI | GGNNCC | 3 cut(s) | 278, 364, 412 |
| BspMI | ACCTGC | 1 cut(s) | 151 |
| BspPI | GGATC | 5 cut(s) | 12, 349, 357, 370, 445 |
| BsrBI | CCGCTC | 1 cut(s) | 52 |
| BsrI | ACTGG | 2 cut(s) | 430, 516 |
| BssECI | CCNNGG | 3 cut(s) | 454, 628, 651 |
| BssNI | GRCGYC | 1 cut(s) | 624 |
| BssSI | CACGAG | 1 cut(s) | 294 |
| BssT1I | CCWWGG | 2 cut(s) | 454, 628 |
| Bst2BI | CACGAG | 1 cut(s) | 294 |
| Bst2UI | CCWGG | 2 cut(s) | 88, 581 |
| Bst4CI | ACNGT | 4 cut(s) | 240, 617, 671, 704 |
| Bst6I | CTCTTC | 1 cut(s) | 600 |
| BstACI | GRCGYC | 1 cut(s) | 624 |
| BstBAI | YACGTR | 1 cut(s) | 464 |
| BstC8I | GCNNGC | 1 cut(s) | 73 |
| BstDEI | CTNAG | 4 cut(s) | 152, 688, 728, 762 |
| BstEII | GGTNACC | 1 cut(s) | 632 |
| BstMAI | GTCTC | 1 cut(s) | 584 |
| BstMCI | CGRYCG | 1 cut(s) | 50 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 72 |
| BstNI | CCWGG | 2 cut(s) | 88, 581 |
| BstPI | GGTNACC | 1 cut(s) | 632 |
| BstSCI | CCNGG | 2 cut(s) | 86, 579 |
| BstSLI | GKGCMC | 2 cut(s) | 197, 615 |
| BstV1I | GCAGC | 1 cut(s) | 95 |
| BstV2I | GAAGAC | 2 cut(s) | 218, 259 |
| BstX2I | RGATCY | 4 cut(s) | 4, 219, 341, 362 |
| BstYI | RGATCY | 4 cut(s) | 4, 219, 341, 362 |
| BstZI | CGGCCG | 1 cut(s) | 47 |
| Bsu15I | ATCGAT | 1 cut(s) | 444 |
| BsuRI | GGCC | 1 cut(s) | 49 |
| BsuTUI | ATCGAT | 1 cut(s) | 444 |
| BtsIMutI | CAGTG | 1 cut(s) | 709 |
| BveI | ACCTGC | 1 cut(s) | 151 |
| Cac8I | GCNNGC | 1 cut(s) | 73 |
| CciNI | GCGGCCGC | 1 cut(s) | 47 |
| Cfr13I | GGNCC | 1 cut(s) | 390 |
| ClaI | ATCGAT | 1 cut(s) | 444 |
| Csp6I | GTAC | 1 cut(s) | 519 |
| CviAII | CATG | 1 cut(s) | 556 |
| CviQI | GTAC | 1 cut(s) | 519 |
| DdeI | CTNAG | 4 cut(s) | 152, 688, 728, 762 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 263 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 263 |
| EaeI | YGGCCR | 1 cut(s) | 47 |
| EagI | CGGCCG | 1 cut(s) | 47 |
| Eam1104I | CTCTTC | 1 cut(s) | 600 |
| EarI | CTCTTC | 1 cut(s) | 600 |
| Ecl136II | GAGCTC | 1 cut(s) | 727 |
| EclXI | CGGCCG | 1 cut(s) | 47 |
| Eco130I | CCWWGG | 2 cut(s) | 454, 628 |
| Eco24I | GRGCYC | 2 cut(s) | 171, 729 |
| Eco47I | GGWCC | 1 cut(s) | 390 |
| Eco52I | CGGCCG | 1 cut(s) | 47 |
| Eco53kI | GAGCTC | 1 cut(s) | 727 |
| Eco57I | CTGAAG | 1 cut(s) | 146 |
| Eco72I | CACGTG | 1 cut(s) | 464 |
| Eco91I | GGTNACC | 1 cut(s) | 632 |
| EcoICRI | GAGCTC | 1 cut(s) | 727 |
| EcoO65I | GGTNACC | 1 cut(s) | 632 |
| EcoRII | CCWGG | 2 cut(s) | 86, 579 |
| EcoT14I | CCWWGG | 2 cut(s) | 454, 628 |
| EcoT38I | GRGCYC | 2 cut(s) | 171, 729 |
| ErhI | CCWWGG | 2 cut(s) | 454, 628 |
| FaeI | CATG | 1 cut(s) | 559 |
| FaiI | YATR | 6 cut(s) | 177, 210, 243, 474, 557, 667 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 251, 283 |
| FatI | CATG | 1 cut(s) | 555 |
| FblI | GTMKAC | 1 cut(s) | 116 |
| Fnu4HI | GCNGC | 3 cut(s) | 47, 50, 84 |
| FriOI | GRGCYC | 2 cut(s) | 171, 729 |
| Fsp4HI | GCNGC | 3 cut(s) | 47, 50, 84 |
| FspBI | CTAG | 1 cut(s) | 758 |
| GluI | GCNGC | 3 cut(s) | 47, 50, 84 |
| GsuI | CTGGAG | 2 cut(s) | 186, 765 |
| HaeIII | GGCC | 1 cut(s) | 49 |
| HapII | CCGG | 2 cut(s) | 127, 681 |
| Hin1I | GRCGYC | 1 cut(s) | 624 |
| Hin1II | CATG | 1 cut(s) | 559 |
| HincII | GTYRAC | 2 cut(s) | 117, 481 |
| HindII | GTYRAC | 2 cut(s) | 117, 481 |
| HinfI | GANTC | 3 cut(s) | 133, 156, 592 |
| HpaII | CCGG | 2 cut(s) | 127, 681 |
| HphI | GGTGA | 4 cut(s) | 440, 489, 569, 629 |
| Hpy166II | GTNNAC | 4 cut(s) | 117, 132, 481, 613 |
| Hpy188I | TCNGA | 3 cut(s) | 234, 324, 652 |
| Hpy188III | TCNNGA | 9 cut(s) | 8, 203, 215, 280, 296, 347, 589, 722, 744 |
| Hpy8I | GTNNAC | 4 cut(s) | 117, 132, 481, 613 |
| Hpy99I | CGWCG | 1 cut(s) | 567 |
| HpyAV | CCTTC | 7 cut(s) | 5, 65, 170, 307, 502, 511, 650 |
| HpyCH4III | ACNGT | 4 cut(s) | 240, 617, 671, 704 |
| HpyCH4IV | ACGT | 4 cut(s) | 264, 463, 562, 624 |
| HpyCH4V | TGCA | 3 cut(s) | 75, 613, 665 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 72 |
| HpyF3I | CTNAG | 4 cut(s) | 152, 688, 728, 762 |
| HpySE526I | ACGT | 4 cut(s) | 264, 463, 562, 624 |
| Hsp92I | GRCGYC | 1 cut(s) | 624 |
| Hsp92II | CATG | 1 cut(s) | 559 |
| LmnI | GCTCC | 2 cut(s) | 57, 746 |
| Lsp1109I | GCAGC | 1 cut(s) | 95 |
| MaeI | CTAG | 1 cut(s) | 758 |
| MaeII | ACGT | 4 cut(s) | 264, 463, 562, 624 |
| MaeIII | GTNAC | 6 cut(s) | 185, 296, 459, 632, 671, 695 |
| MbiI | CCGCTC | 1 cut(s) | 52 |
| MboII | GAAGA | 4 cut(s) | 50, 218, 259, 587 |
| MflI | RGATCY | 4 cut(s) | 4, 219, 341, 362 |
| MhlI | GDGCHC | 4 cut(s) | 171, 197, 615, 729 |
| MluCI | AATT | 2 cut(s) | 317, 355 |
| MlyI | GAGTC | 2 cut(s) | 127, 586 |
| MroXI | GAANNNNTTC | 1 cut(s) | 266 |
| MspI | CCGG | 2 cut(s) | 127, 681 |
| MspR9I | CCNGG | 2 cut(s) | 88, 581 |
| MvaI | CCWGG | 2 cut(s) | 88, 581 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 72 |
| NlaIII | CATG | 1 cut(s) | 559 |
| NlaIV | GGNNCC | 3 cut(s) | 278, 364, 412 |
| NmuCI | GTSAC | 2 cut(s) | 296, 459 |
| NotI | GCGGCCGC | 1 cut(s) | 47 |
| PaqCI | CACCTGC | 1 cut(s) | 151 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 474, 621 |
| PdmI | GAANNNNTTC | 1 cut(s) | 266 |
| PfeI | GAWTC | 1 cut(s) | 156 |
| PkrI | GCNGC | 3 cut(s) | 48, 51, 85 |
| PleI | GAGTC | 2 cut(s) | 127, 586 |
| PmaCI | CACGTG | 1 cut(s) | 464 |
| PmlI | CACGTG | 1 cut(s) | 464 |
| PpsI | GAGTC | 2 cut(s) | 127, 586 |
| Ppu21I | YACGTR | 1 cut(s) | 464 |
| Psp124BI | GAGCTC | 1 cut(s) | 729 |
| Psp6I | CCWGG | 2 cut(s) | 86, 579 |
| PspCI | CACGTG | 1 cut(s) | 464 |
| PspEI | GGTNACC | 1 cut(s) | 632 |
| PspGI | CCWGG | 2 cut(s) | 86, 579 |
| PspN4I | GGNNCC | 3 cut(s) | 278, 364, 412 |
| PspPI | GGNCC | 1 cut(s) | 390 |
| PsuI | RGATCY | 4 cut(s) | 4, 219, 341, 362 |
| RsaI | GTAC | 1 cut(s) | 520 |
| RsaNI | GTAC | 1 cut(s) | 519 |
| SacI | GAGCTC | 1 cut(s) | 729 |
| SalI | GTCGAC | 1 cut(s) | 115 |
| SatI | GCNGC | 3 cut(s) | 47, 50, 84 |
| Sau96I | GGNCC | 1 cut(s) | 390 |
| ScaI | AGTACT | 1 cut(s) | 520 |
| SchI | GAGTC | 2 cut(s) | 127, 586 |
| ScrFI | CCNGG | 2 cut(s) | 88, 581 |
| SduI | GDGCHC | 4 cut(s) | 171, 197, 615, 729 |
| SinI | GGWCC | 1 cut(s) | 390 |
| SmlI | CTYRAG | 3 cut(s) | 78, 287, 722 |
| SmoI | CTYRAG | 3 cut(s) | 78, 287, 722 |
| Sse9I | AATT | 2 cut(s) | 317, 355 |
| SsiI | CCGC | 3 cut(s) | 46, 50, 693 |
| SspI | AATATT | 1 cut(s) | 551 |
| SspMI | CTAG | 1 cut(s) | 758 |
| SstI | GAGCTC | 1 cut(s) | 729 |
| StyD4I | CCNGG | 2 cut(s) | 86, 579 |
| StyI | CCWWGG | 2 cut(s) | 454, 628 |
| TaaI | ACNGT | 4 cut(s) | 240, 617, 671, 704 |
| TaiI | ACGT | 4 cut(s) | 267, 466, 565, 627 |
| TaqI | TCGA | 5 cut(s) | 116, 252, 444, 565, 588 |
| TasI | AATT | 2 cut(s) | 317, 355 |
| TatI | WGTACW | 1 cut(s) | 518 |
| TauI | GCSGC | 2 cut(s) | 49, 52 |
| TfiI | GAWTC | 1 cut(s) | 156 |
| TscAI | CASTG | 1 cut(s) | 709 |
| TseFI | GTSAC | 2 cut(s) | 296, 459 |
| TseI | GCWGC | 1 cut(s) | 83 |
| Tsp45I | GTSAC | 2 cut(s) | 296, 459 |
| TspDTI | ATGAA | 3 cut(s) | 23, 218, 544 |
| TspRI | CASTG | 1 cut(s) | 709 |
| VneI | GTGCAC | 1 cut(s) | 611 |
| VpaK11BI | GGWCC | 1 cut(s) | 390 |
| XapI | RAATTY | 2 cut(s) | 317, 355 |
| XmiI | GTMKAC | 1 cut(s) | 116 |
| XmnI | GAANNNNTTC | 1 cut(s) | 266 |
| XspI | CTAG | 1 cut(s) | 758 |
| ZraI | GACGTC | 1 cut(s) | 625 |
| ZrmI | AGTACT | 1 cut(s) | 520 |