Homeodomain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Homeodomain | PF00046 | 38 - 98 | 1.4e-10 | Homeodomain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 251 |
| AciI | CCGC | 2 cut(s) | 131, 612 |
| AclI | AACGTT | 1 cut(s) | 315 |
| AclWI | GGATC | 4 cut(s) | 337, 345, 358, 372 |
| AcsI | RAATTY | 1 cut(s) | 305 |
| AcvI | CACGTG | 1 cut(s) | 404 |
| AfaI | GTAC | 2 cut(s) | 182, 460 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 326, 554 |
| AflIII | ACRYGT | 1 cut(s) | 403 |
| AgeI | ACCGGT | 1 cut(s) | 114 |
| AgsI | TTSAA | 3 cut(s) | 203, 301, 445 |
| AhlI | ACTAGT | 1 cut(s) | 356 |
| AjnI | CCWGG | 1 cut(s) | 519 |
| AluBI | AGCT | 1 cut(s) | 637 |
| AluI | AGCT | 1 cut(s) | 637 |
| Alw21I | GWGCWC | 1 cut(s) | 639 |
| AlwI | GGATC | 4 cut(s) | 337, 345, 358, 372 |
| AoxI | GGCC | 1 cut(s) | 154 |
| ApeKI | GCWGC | 1 cut(s) | 98 |
| ApoI | RAATTY | 1 cut(s) | 305 |
| AsiGI | ACCGGT | 1 cut(s) | 114 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 254, 534 |
| AspS9I | GGNCC | 1 cut(s) | 154 |
| AsuC2I | CCSGG | 1 cut(s) | 103 |
| AsuHPI | GGTGA | 4 cut(s) | 429, 509, 569, 626 |
| BamHI | GGATCC | 1 cut(s) | 350 |
| BanII | GRGCYC | 2 cut(s) | 124, 639 |
| BauI | CACGAG | 1 cut(s) | 282 |
| BbrPI | CACGTG | 1 cut(s) | 404 |
| BbsI | GAAGAC | 2 cut(s) | 247, 587 |
| Bbv12I | GWGCWC | 1 cut(s) | 639 |
| BbvI | GCAGC | 1 cut(s) | 110 |
| BccI | CCATC | 1 cut(s) | 365 |
| BciT130I | CCWGG | 1 cut(s) | 521 |
| BcnI | CCSGG | 1 cut(s) | 103 |
| BcuI | ACTAGT | 1 cut(s) | 356 |
| BfaI | CTAG | 1 cut(s) | 357 |
| BglII | AGATCT | 1 cut(s) | 207 |
| BisI | GCNGC | 1 cut(s) | 99 |
| BlpI | GCTNAGC | 1 cut(s) | 638 |
| BlsI | GCNGC | 1 cut(s) | 100 |
| BmcAI | AGTACT | 1 cut(s) | 460 |
| Bme1390I | CCNGG | 2 cut(s) | 103, 521 |
| BmgT120I | GGNCC | 1 cut(s) | 154 |
| BmiI | GGNNCC | 4 cut(s) | 6, 123, 266, 352 |
| BmrFI | CCNGG | 2 cut(s) | 103, 521 |
| BmsI | GCATC | 2 cut(s) | 99, 649 |
| BpiI | GAAGAC | 2 cut(s) | 247, 587 |
| BpmI | CTGGAG | 1 cut(s) | 174 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 638 |
| BpuEI | CTTGAG | 3 cut(s) | 134, 260, 653 |
| BpuMI | CCSGG | 1 cut(s) | 103 |
| BsaAI | YACGTR | 1 cut(s) | 404 |
| BsaJI | CCNNGG | 2 cut(s) | 75, 591 |
| BsaWI | WCCGGW | 2 cut(s) | 114, 319 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 326, 554 |
| Bse118I | RCCGGY | 1 cut(s) | 114 |
| Bse1I | ACTGG | 1 cut(s) | 456 |
| BseBI | CCWGG | 1 cut(s) | 521 |
| BseDI | CCNNGG | 2 cut(s) | 75, 591 |
| BseGI | GGATG | 1 cut(s) | 90 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 326, 554 |
| BseMII | CTCAG | 1 cut(s) | 652 |
| BseNI | ACTGG | 1 cut(s) | 456 |
| BseRI | GAGGAG | 4 cut(s) | 92, 424, 522, 525 |
| BseXI | GCAGC | 1 cut(s) | 110 |
| BseYI | CCCAGC | 2 cut(s) | 39, 63 |
| BshFI | GGCC | 1 cut(s) | 156 |
| BshTI | ACCGGT | 1 cut(s) | 114 |
| BsiHKAI | GWGCWC | 1 cut(s) | 639 |
| BsiSI | CCGG | 3 cut(s) | 102, 115, 320 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 326, 554 |
| BsnI | GGCC | 1 cut(s) | 156 |
| Bsp1286I | GDGCHC | 2 cut(s) | 124, 639 |
| Bsp143I | GATC | 8 cut(s) | 207, 237, 329, 337, 350, 377, 385, 514 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 638 |
| BspACI | CCGC | 2 cut(s) | 131, 612 |
| BspANI | GGCC | 1 cut(s) | 156 |
| BspCNI | CTCAG | 1 cut(s) | 651 |
| BspLI | GGNNCC | 4 cut(s) | 6, 123, 266, 352 |
| BspPI | GGATC | 4 cut(s) | 337, 345, 358, 372 |
| BsrFI | RCCGGY | 1 cut(s) | 114 |
| BsrI | ACTGG | 1 cut(s) | 456 |
| BssAI | RCCGGY | 1 cut(s) | 114 |
| BssECI | CCNNGG | 2 cut(s) | 75, 591 |
| BssMI | GATC | 8 cut(s) | 207, 237, 329, 337, 350, 377, 385, 514 |
| BssSI | CACGAG | 1 cut(s) | 282 |
| Bst2BI | CACGAG | 1 cut(s) | 282 |
| Bst2UI | CCWGG | 1 cut(s) | 521 |
| BstBAI | YACGTR | 1 cut(s) | 404 |
| BstDEI | CTNAG | 3 cut(s) | 140, 638, 672 |
| BstF5I | GGATG | 1 cut(s) | 90 |
| BstKTI | GATC | 8 cut(s) | 210, 240, 332, 340, 353, 380, 388, 517 |
| BstMBI | GATC | 8 cut(s) | 207, 237, 329, 337, 350, 377, 385, 514 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 668 |
| BstNI | CCWGG | 1 cut(s) | 521 |
| BstSCI | CCNGG | 2 cut(s) | 101, 519 |
| BstV1I | GCAGC | 1 cut(s) | 110 |
| BstV2I | GAAGAC | 2 cut(s) | 247, 587 |
| BstX2I | RGATCY | 4 cut(s) | 207, 329, 350, 377 |
| BstYI | RGATCY | 4 cut(s) | 207, 329, 350, 377 |
| BsuRI | GGCC | 1 cut(s) | 156 |
| BtsCI | GGATG | 1 cut(s) | 90 |
| Cfr10I | RCCGGY | 1 cut(s) | 114 |
| Cfr13I | GGNCC | 1 cut(s) | 154 |
| Csp6I | GTAC | 2 cut(s) | 181, 459 |
| CspAI | ACCGGT | 1 cut(s) | 114 |
| CviAII | CATG | 5 cut(s) | 496, 550, 554, 577, 667 |
| CviQI | GTAC | 2 cut(s) | 181, 459 |
| DdeI | CTNAG | 3 cut(s) | 140, 638, 672 |
| DpnI | GATC | 8 cut(s) | 209, 239, 331, 339, 352, 379, 387, 516 |
| DpnII | GATC | 8 cut(s) | 207, 237, 329, 337, 350, 377, 385, 514 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 251 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 251 |
| Ecl136II | GAGCTC | 1 cut(s) | 637 |
| Eco24I | GRGCYC | 2 cut(s) | 124, 639 |
| Eco53kI | GAGCTC | 1 cut(s) | 637 |
| Eco72I | CACGTG | 1 cut(s) | 404 |
| EcoICRI | GAGCTC | 1 cut(s) | 637 |
| EcoO109I | RGGNCCY | 1 cut(s) | 154 |
| EcoRII | CCWGG | 1 cut(s) | 519 |
| EcoT22I | ATGCAT | 1 cut(s) | 555 |
| EcoT38I | GRGCYC | 2 cut(s) | 124, 639 |
| FaeI | CATG | 5 cut(s) | 499, 553, 557, 580, 670 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 239, 271 |
| FatI | CATG | 5 cut(s) | 495, 549, 553, 576, 666 |
| Fnu4HI | GCNGC | 1 cut(s) | 99 |
| FokI | GGATG | 1 cut(s) | 77 |
| FriOI | GRGCYC | 2 cut(s) | 124, 639 |
| Fsp4HI | GCNGC | 1 cut(s) | 99 |
| FspBI | CTAG | 1 cut(s) | 357 |
| GluI | GCNGC | 1 cut(s) | 99 |
| GsaI | CCCAGC | 2 cut(s) | 43, 67 |
| GsuI | CTGGAG | 1 cut(s) | 174 |
| HaeIII | GGCC | 1 cut(s) | 156 |
| HapII | CCGG | 3 cut(s) | 102, 115, 320 |
| Hin1II | CATG | 5 cut(s) | 499, 553, 557, 580, 670 |
| HincII | GTYRAC | 1 cut(s) | 421 |
| HindII | GTYRAC | 1 cut(s) | 421 |
| HinfI | GANTC | 3 cut(s) | 144, 199, 617 |
| HpaII | CCGG | 3 cut(s) | 102, 115, 320 |
| HphI | GGTGA | 4 cut(s) | 429, 509, 569, 626 |
| Hpy166II | GTNNAC | 1 cut(s) | 421 |
| Hpy188I | TCNGA | 2 cut(s) | 312, 592 |
| Hpy188III | TCNNGA | 5 cut(s) | 191, 203, 268, 284, 335 |
| Hpy8I | GTNNAC | 1 cut(s) | 421 |
| HpyAV | CCTTC | 4 cut(s) | 224, 295, 451, 545 |
| HpyCH4IV | ACGT | 3 cut(s) | 252, 315, 403 |
| HpyCH4V | TGCA | 4 cut(s) | 19, 223, 553, 662 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 668 |
| HpyF3I | CTNAG | 3 cut(s) | 140, 638, 672 |
| HpySE526I | ACGT | 3 cut(s) | 252, 315, 403 |
| Hsp92II | CATG | 5 cut(s) | 499, 553, 557, 580, 670 |
| Kzo9I | GATC | 8 cut(s) | 207, 237, 329, 337, 350, 377, 385, 514 |
| LmnI | GCTCC | 1 cut(s) | 127 |
| Lsp1109I | GCAGC | 1 cut(s) | 110 |
| LweI | GCATC | 2 cut(s) | 99, 649 |
| MaeI | CTAG | 1 cut(s) | 357 |
| MaeII | ACGT | 3 cut(s) | 252, 315, 403 |
| MaeIII | GTNAC | 4 cut(s) | 30, 110, 399, 614 |
| MalI | GATC | 8 cut(s) | 209, 239, 331, 339, 352, 379, 387, 516 |
| MboI | GATC | 8 cut(s) | 207, 237, 329, 337, 350, 377, 385, 514 |
| MboII | GAAGA | 2 cut(s) | 247, 592 |
| MflI | RGATCY | 4 cut(s) | 207, 329, 350, 377 |
| MhlI | GDGCHC | 2 cut(s) | 124, 639 |
| MluCI | AATT | 3 cut(s) | 53, 305, 343 |
| MlyI | GAGTC | 1 cut(s) | 611 |
| Mph1103I | ATGCAT | 1 cut(s) | 555 |
| MroXI | GAANNNNTTC | 2 cut(s) | 254, 534 |
| MseI | TTAA | 1 cut(s) | 177 |
| MspI | CCGG | 3 cut(s) | 102, 115, 320 |
| MspR9I | CCNGG | 2 cut(s) | 103, 521 |
| MvaI | CCWGG | 1 cut(s) | 521 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 668 |
| NciI | CCSGG | 1 cut(s) | 103 |
| NdeII | GATC | 8 cut(s) | 207, 237, 329, 337, 350, 377, 385, 514 |
| NlaIII | CATG | 5 cut(s) | 499, 553, 557, 580, 670 |
| NlaIV | GGNNCC | 4 cut(s) | 6, 123, 266, 352 |
| NmuCI | GTSAC | 2 cut(s) | 399, 614 |
| NsiI | ATGCAT | 1 cut(s) | 555 |
| PdmI | GAANNNNTTC | 2 cut(s) | 254, 534 |
| PfeI | GAWTC | 2 cut(s) | 144, 199 |
| PinAI | ACCGGT | 1 cut(s) | 114 |
| PkrI | GCNGC | 1 cut(s) | 100 |
| PleI | GAGTC | 1 cut(s) | 611 |
| PmaCI | CACGTG | 1 cut(s) | 404 |
| PmlI | CACGTG | 1 cut(s) | 404 |
| PpsI | GAGTC | 1 cut(s) | 611 |
| Ppu21I | YACGTR | 1 cut(s) | 404 |
| Psp124BI | GAGCTC | 1 cut(s) | 639 |
| Psp1406I | AACGTT | 1 cut(s) | 315 |
| Psp6I | CCWGG | 1 cut(s) | 519 |
| PspCI | CACGTG | 1 cut(s) | 404 |
| PspFI | CCCAGC | 2 cut(s) | 39, 63 |
| PspGI | CCWGG | 1 cut(s) | 519 |
| PspN4I | GGNNCC | 4 cut(s) | 6, 123, 266, 352 |
| PspPI | GGNCC | 1 cut(s) | 154 |
| PsuI | RGATCY | 4 cut(s) | 207, 329, 350, 377 |
| RsaI | GTAC | 2 cut(s) | 182, 460 |
| RsaNI | GTAC | 2 cut(s) | 181, 459 |
| SacI | GAGCTC | 1 cut(s) | 639 |
| SaqAI | TTAA | 1 cut(s) | 177 |
| SatI | GCNGC | 1 cut(s) | 99 |
| Sau3AI | GATC | 8 cut(s) | 207, 237, 329, 337, 350, 377, 385, 514 |
| Sau96I | GGNCC | 1 cut(s) | 154 |
| ScaI | AGTACT | 1 cut(s) | 460 |
| SchI | GAGTC | 1 cut(s) | 611 |
| ScrFI | CCNGG | 2 cut(s) | 103, 521 |
| SduI | GDGCHC | 2 cut(s) | 124, 639 |
| SetI | ASST | 7 cut(s) | 255, 276, 318, 406, 467, 601, 639 |
| SfaNI | GCATC | 2 cut(s) | 99, 649 |
| SmlI | CTYRAG | 3 cut(s) | 149, 275, 632 |
| SmoI | CTYRAG | 3 cut(s) | 149, 275, 632 |
| SpeI | ACTAGT | 1 cut(s) | 356 |
| Sse9I | AATT | 3 cut(s) | 53, 305, 343 |
| SsiI | CCGC | 2 cut(s) | 131, 612 |
| SspMI | CTAG | 1 cut(s) | 357 |
| SstI | GAGCTC | 1 cut(s) | 639 |
| StyD4I | CCNGG | 2 cut(s) | 101, 519 |
| TaiI | ACGT | 3 cut(s) | 255, 318, 406 |
| TaqI | TCGA | 2 cut(s) | 240, 336 |
| TasI | AATT | 3 cut(s) | 53, 305, 343 |
| TatI | WGTACW | 1 cut(s) | 458 |
| TfiI | GAWTC | 2 cut(s) | 144, 199 |
| Tru1I | TTAA | 1 cut(s) | 177 |
| Tru9I | TTAA | 1 cut(s) | 177 |
| TseFI | GTSAC | 2 cut(s) | 399, 614 |
| TseI | GCWGC | 1 cut(s) | 98 |
| Tsp45I | GTSAC | 2 cut(s) | 399, 614 |
| TspDTI | ATGAA | 3 cut(s) | 206, 484, 593 |
| XapI | RAATTY | 1 cut(s) | 305 |
| XmnI | GAANNNNTTC | 2 cut(s) | 254, 534 |
| XspI | CTAG | 1 cut(s) | 357 |
| ZrmI | AGTACT | 1 cut(s) | 460 |
| Zsp2I | ATGCAT | 1 cut(s) | 555 |