Homeodomain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 618 |
| AciI | CCGC | 1 cut(s) | 476 |
| AclI | AACGTT | 1 cut(s) | 318 |
| AclWI | GGATC | 5 cut(s) | 340, 348, 361, 436, 558 |
| AcsI | RAATTY | 2 cut(s) | 308, 442 |
| AcvI | CACGTG | 1 cut(s) | 455 |
| AcyI | GRCGYC | 1 cut(s) | 615 |
| AfaI | GTAC | 3 cut(s) | 185, 421, 511 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 117, 605 |
| AflII | CTTAAG | 1 cut(s) | 179 |
| AflIII | ACRYGT | 1 cut(s) | 454 |
| AgeI | ACCGGT | 1 cut(s) | 117 |
| AgsI | TTSAA | 2 cut(s) | 206, 496 |
| AhlI | ACTAGT | 2 cut(s) | 359, 506 |
| AjnI | CCWGG | 2 cut(s) | 153, 570 |
| AleI | CACNNNNGTG | 1 cut(s) | 465 |
| AluBI | AGCT | 2 cut(s) | 31, 160 |
| AluI | AGCT | 2 cut(s) | 31, 160 |
| Alw21I | GWGCWC | 1 cut(s) | 606 |
| Alw26I | GTCTC | 1 cut(s) | 618 |
| Alw44I | GTGCAC | 1 cut(s) | 602 |
| AlwI | GGATC | 5 cut(s) | 340, 348, 361, 436, 558 |
| ApaLI | GTGCAC | 1 cut(s) | 602 |
| ApeKI | GCWGC | 1 cut(s) | 74 |
| ApoI | RAATTY | 2 cut(s) | 308, 442 |
| AsiGI | ACCGGT | 1 cut(s) | 117 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 257, 585 |
| AspS9I | GGNCC | 1 cut(s) | 381 |
| AsuC2I | CCSGG | 1 cut(s) | 79 |
| AsuHPI | GGTGA | 3 cut(s) | 480, 560, 620 |
| AvaII | GGWCC | 1 cut(s) | 381 |
| BaeGI | GKGCMC | 1 cut(s) | 606 |
| BamHI | GGATCC | 1 cut(s) | 353 |
| BauI | CACGAG | 1 cut(s) | 285 |
| BbrPI | CACGTG | 1 cut(s) | 455 |
| BbsI | GAAGAC | 1 cut(s) | 638 |
| Bbv12I | GWGCWC | 1 cut(s) | 606 |
| BbvI | GCAGC | 1 cut(s) | 86 |
| BccI | CCATC | 2 cut(s) | 368, 419 |
| BciT130I | CCWGG | 2 cut(s) | 155, 572 |
| BcnI | CCSGG | 1 cut(s) | 79 |
| BcoDI | GTCTC | 1 cut(s) | 618 |
| BcuI | ACTAGT | 2 cut(s) | 359, 506 |
| BfaI | CTAG | 3 cut(s) | 360, 507, 643 |
| BfrI | CTTAAG | 1 cut(s) | 179 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 103 |
| BglII | AGATCT | 1 cut(s) | 210 |
| BisI | GCNGC | 1 cut(s) | 75 |
| BlsI | GCNGC | 1 cut(s) | 76 |
| BmcAI | AGTACT | 1 cut(s) | 511 |
| Bme1390I | CCNGG | 3 cut(s) | 79, 155, 572 |
| Bme18I | GGWCC | 1 cut(s) | 381 |
| BmgT120I | GGNCC | 1 cut(s) | 381 |
| BmiI | GGNNCC | 4 cut(s) | 6, 269, 355, 403 |
| BmrFI | CCNGG | 3 cut(s) | 79, 155, 572 |
| BmrI | ACTGGG | 1 cut(s) | 593 |
| BmuI | ACTGGG | 1 cut(s) | 593 |
| BpiI | GAAGAC | 1 cut(s) | 638 |
| BpmI | CTGGAG | 2 cut(s) | 137, 177 |
| BpuEI | CTTGAG | 1 cut(s) | 263 |
| BpuMI | CCSGG | 1 cut(s) | 79 |
| BsaAI | YACGTR | 1 cut(s) | 455 |
| BsaHI | GRCGYC | 1 cut(s) | 615 |
| BsaI | GGTCTC | 1 cut(s) | 618 |
| BsaJI | CCNNGG | 2 cut(s) | 546, 619 |
| BsaWI | WCCGGW | 1 cut(s) | 117 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 117, 605 |
| Bse118I | RCCGGY | 1 cut(s) | 117 |
| Bse1I | ACTGG | 3 cut(s) | 412, 421, 599 |
| BseBI | CCWGG | 2 cut(s) | 155, 572 |
| BseDI | CCNNGG | 2 cut(s) | 546, 619 |
| BseGI | GGATG | 1 cut(s) | 61 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 117, 605 |
| BseNI | ACTGG | 3 cut(s) | 412, 421, 599 |
| BseRI | GAGGAG | 2 cut(s) | 475, 576 |
| BseSI | GKGCMC | 1 cut(s) | 606 |
| BseXI | GCAGC | 1 cut(s) | 86 |
| BseYI | CCCAGC | 1 cut(s) | 39 |
| BshTI | ACCGGT | 1 cut(s) | 117 |
| BsiHKAI | GWGCWC | 1 cut(s) | 606 |
| BsiSI | CCGG | 2 cut(s) | 78, 118 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 117, 605 |
| BsmAI | GTCTC | 1 cut(s) | 618 |
| BsmI | GAATGC | 1 cut(s) | 478 |
| Bso31I | GGTCTC | 1 cut(s) | 618 |
| Bsp1286I | GDGCHC | 1 cut(s) | 606 |
| Bsp19I | CCATGG | 1 cut(s) | 546 |
| BspACI | CCGC | 1 cut(s) | 476 |
| BspLI | GGNNCC | 4 cut(s) | 6, 269, 355, 403 |
| BspPI | GGATC | 5 cut(s) | 340, 348, 361, 436, 558 |
| BspTI | CTTAAG | 1 cut(s) | 179 |
| BspTNI | GGTCTC | 1 cut(s) | 618 |
| BsrFI | RCCGGY | 1 cut(s) | 117 |
| BsrI | ACTGG | 3 cut(s) | 412, 421, 599 |
| BssAI | RCCGGY | 1 cut(s) | 117 |
| BssECI | CCNNGG | 2 cut(s) | 546, 619 |
| BssNI | GRCGYC | 1 cut(s) | 615 |
| BssSI | CACGAG | 1 cut(s) | 285 |
| BssT1I | CCWWGG | 2 cut(s) | 546, 619 |
| Bst2BI | CACGAG | 1 cut(s) | 285 |
| Bst2UI | CCWGG | 2 cut(s) | 155, 572 |
| Bst4CI | ACNGT | 1 cut(s) | 608 |
| Bst6I | CTCTTC | 2 cut(s) | 263, 591 |
| BstACI | GRCGYC | 1 cut(s) | 615 |
| BstAFI | CTTAAG | 1 cut(s) | 179 |
| BstBAI | YACGTR | 1 cut(s) | 455 |
| BstDEI | CTNAG | 1 cut(s) | 143 |
| BstDSI | CCRYGG | 1 cut(s) | 546 |
| BstF5I | GGATG | 1 cut(s) | 61 |
| BstMAI | GTCTC | 1 cut(s) | 618 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 103 |
| BstNI | CCWGG | 2 cut(s) | 155, 572 |
| BstSCI | CCNGG | 3 cut(s) | 77, 153, 570 |
| BstSLI | GKGCMC | 1 cut(s) | 606 |
| BstV1I | GCAGC | 1 cut(s) | 86 |
| BstV2I | GAAGAC | 1 cut(s) | 638 |
| BstX2I | RGATCY | 3 cut(s) | 210, 353, 428 |
| BstYI | RGATCY | 3 cut(s) | 210, 353, 428 |
| BtgI | CCRYGG | 1 cut(s) | 546 |
| BtsCI | GGATG | 1 cut(s) | 61 |
| BtsIMutI | CAGTG | 2 cut(s) | 405, 606 |
| Cfr10I | RCCGGY | 1 cut(s) | 117 |
| Cfr13I | GGNCC | 1 cut(s) | 381 |
| Csp6I | GTAC | 3 cut(s) | 184, 420, 510 |
| CspAI | ACCGGT | 1 cut(s) | 117 |
| CviAII | CATG | 1 cut(s) | 547 |
| CviJI | RGCY | 4 cut(s) | 31, 77, 160, 284 |
| CviKI_1 | RGCY | 4 cut(s) | 31, 77, 160, 284 |
| CviQI | GTAC | 3 cut(s) | 184, 420, 510 |
| DdeI | CTNAG | 1 cut(s) | 143 |
| Eam1104I | CTCTTC | 2 cut(s) | 263, 591 |
| EarI | CTCTTC | 2 cut(s) | 263, 591 |
| Eco130I | CCWWGG | 2 cut(s) | 546, 619 |
| Eco31I | GGTCTC | 1 cut(s) | 618 |
| Eco47I | GGWCC | 1 cut(s) | 381 |
| Eco72I | CACGTG | 1 cut(s) | 455 |
| EcoRII | CCWGG | 2 cut(s) | 153, 570 |
| EcoT14I | CCWWGG | 2 cut(s) | 546, 619 |
| ErhI | CCWWGG | 2 cut(s) | 546, 619 |
| FaeI | CATG | 1 cut(s) | 550 |
| FaiI | YATR | 5 cut(s) | 168, 234, 465, 522, 548 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 242, 274 |
| FatI | CATG | 1 cut(s) | 546 |
| FauI | CCCGC | 1 cut(s) | 483 |
| Fnu4HI | GCNGC | 1 cut(s) | 75 |
| FokI | GGATG | 1 cut(s) | 68 |
| Fsp4HI | GCNGC | 1 cut(s) | 75 |
| FspBI | CTAG | 3 cut(s) | 360, 507, 643 |
| GluI | GCNGC | 1 cut(s) | 75 |
| GsaI | CCCAGC | 1 cut(s) | 43 |
| GsuI | CTGGAG | 2 cut(s) | 137, 177 |
| HapII | CCGG | 2 cut(s) | 78, 118 |
| Hin1I | GRCGYC | 1 cut(s) | 615 |
| Hin1II | CATG | 1 cut(s) | 550 |
| HincII | GTYRAC | 1 cut(s) | 472 |
| HindII | GTYRAC | 1 cut(s) | 472 |
| HinfI | GANTC | 3 cut(s) | 124, 147, 202 |
| HpaII | CCGG | 2 cut(s) | 78, 118 |
| HphI | GGTGA | 3 cut(s) | 480, 560, 620 |
| Hpy166II | GTNNAC | 4 cut(s) | 123, 460, 472, 604 |
| Hpy188I | TCNGA | 1 cut(s) | 315 |
| Hpy188III | TCNNGA | 4 cut(s) | 194, 206, 271, 287 |
| Hpy8I | GTNNAC | 4 cut(s) | 123, 460, 472, 604 |
| HpyAV | CCTTC | 3 cut(s) | 53, 227, 502 |
| HpyCH4III | ACNGT | 1 cut(s) | 608 |
| HpyCH4IV | ACGT | 3 cut(s) | 318, 454, 615 |
| HpyCH4V | TGCA | 2 cut(s) | 226, 604 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 103 |
| HpyF3I | CTNAG | 1 cut(s) | 143 |
| HpySE526I | ACGT | 3 cut(s) | 318, 454, 615 |
| Hsp92I | GRCGYC | 1 cut(s) | 615 |
| Hsp92II | CATG | 1 cut(s) | 550 |
| LmnI | GCTCC | 2 cut(s) | 28, 157 |
| Lsp1109I | GCAGC | 1 cut(s) | 86 |
| MaeI | CTAG | 3 cut(s) | 360, 507, 643 |
| MaeII | ACGT | 3 cut(s) | 318, 454, 615 |
| MaeIII | GTNAC | 1 cut(s) | 450 |
| MboII | GAAGA | 4 cut(s) | 205, 250, 578, 643 |
| MflI | RGATCY | 3 cut(s) | 210, 353, 428 |
| MhlI | GDGCHC | 1 cut(s) | 606 |
| MluCI | AATT | 3 cut(s) | 308, 346, 442 |
| MlyI | GAGTC | 1 cut(s) | 118 |
| MroXI | GAANNNNTTC | 2 cut(s) | 257, 585 |
| MseI | TTAA | 1 cut(s) | 180 |
| MslI | CAYNNNNRTG | 1 cut(s) | 465 |
| MspCI | CTTAAG | 1 cut(s) | 179 |
| MspI | CCGG | 2 cut(s) | 78, 118 |
| MspR9I | CCNGG | 3 cut(s) | 79, 155, 572 |
| Mva1269I | GAATGC | 1 cut(s) | 478 |
| MvaI | CCWGG | 2 cut(s) | 155, 572 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 103 |
| NciI | CCSGG | 1 cut(s) | 79 |
| NcoI | CCATGG | 1 cut(s) | 546 |
| NlaIII | CATG | 1 cut(s) | 550 |
| NlaIV | GGNNCC | 4 cut(s) | 6, 269, 355, 403 |
| NmuCI | GTSAC | 1 cut(s) | 450 |
| OliI | CACNNNNGTG | 1 cut(s) | 465 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 612 |
| PctI | GAATGC | 1 cut(s) | 478 |
| PdmI | GAANNNNTTC | 2 cut(s) | 257, 585 |
| PfeI | GAWTC | 2 cut(s) | 147, 202 |
| PfoI | TCCNGGA | 1 cut(s) | 153 |
| PinAI | ACCGGT | 1 cut(s) | 117 |
| PkrI | GCNGC | 1 cut(s) | 76 |
| PleI | GAGTC | 1 cut(s) | 118 |
| PmaCI | CACGTG | 1 cut(s) | 455 |
| PmlI | CACGTG | 1 cut(s) | 455 |
| PpsI | GAGTC | 1 cut(s) | 118 |
| Ppu21I | YACGTR | 1 cut(s) | 455 |
| Psp1406I | AACGTT | 1 cut(s) | 318 |
| Psp6I | CCWGG | 2 cut(s) | 153, 570 |
| PspCI | CACGTG | 1 cut(s) | 455 |
| PspFI | CCCAGC | 1 cut(s) | 39 |
| PspGI | CCWGG | 2 cut(s) | 153, 570 |
| PspN4I | GGNNCC | 4 cut(s) | 6, 269, 355, 403 |
| PspPI | GGNCC | 1 cut(s) | 381 |
| PsuI | RGATCY | 3 cut(s) | 210, 353, 428 |
| RsaI | GTAC | 3 cut(s) | 185, 421, 511 |
| RsaNI | GTAC | 3 cut(s) | 184, 420, 510 |
| RseI | CAYNNNNRTG | 1 cut(s) | 465 |
| SaqAI | TTAA | 1 cut(s) | 180 |
| SatI | GCNGC | 1 cut(s) | 75 |
| Sau96I | GGNCC | 1 cut(s) | 381 |
| ScaI | AGTACT | 1 cut(s) | 511 |
| SchI | GAGTC | 1 cut(s) | 118 |
| ScrFI | CCNGG | 3 cut(s) | 79, 155, 572 |
| SduI | GDGCHC | 1 cut(s) | 606 |
| SinI | GGWCC | 1 cut(s) | 381 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 465 |
| SmlI | CTYRAG | 2 cut(s) | 179, 278 |
| SmoI | CTYRAG | 2 cut(s) | 179, 278 |
| SpeI | ACTAGT | 2 cut(s) | 359, 506 |
| Sse9I | AATT | 3 cut(s) | 308, 346, 442 |
| SsiI | CCGC | 1 cut(s) | 476 |
| SspMI | CTAG | 3 cut(s) | 360, 507, 643 |
| StyD4I | CCNGG | 3 cut(s) | 77, 153, 570 |
| StyI | CCWWGG | 2 cut(s) | 546, 619 |
| TaaI | ACNGT | 1 cut(s) | 608 |
| TaiI | ACGT | 3 cut(s) | 321, 457, 618 |
| TaqI | TCGA | 4 cut(s) | 51, 243, 339, 579 |
| TasI | AATT | 3 cut(s) | 308, 346, 442 |
| TatI | WGTACW | 1 cut(s) | 509 |
| TfiI | GAWTC | 2 cut(s) | 147, 202 |
| Tru1I | TTAA | 1 cut(s) | 180 |
| Tru9I | TTAA | 1 cut(s) | 180 |
| TscAI | CASTG | 2 cut(s) | 412, 606 |
| TseFI | GTSAC | 1 cut(s) | 450 |
| TseI | GCWGC | 1 cut(s) | 74 |
| Tsp45I | GTSAC | 1 cut(s) | 450 |
| TspDTI | ATGAA | 2 cut(s) | 72, 209 |
| TspRI | CASTG | 2 cut(s) | 412, 606 |
| Vha464I | CTTAAG | 1 cut(s) | 179 |
| VneI | GTGCAC | 1 cut(s) | 602 |
| VpaK11BI | GGWCC | 1 cut(s) | 381 |
| XapI | RAATTY | 2 cut(s) | 308, 442 |
| XmnI | GAANNNNTTC | 2 cut(s) | 257, 585 |
| XspI | CTAG | 3 cut(s) | 360, 507, 643 |
| ZraI | GACGTC | 1 cut(s) | 616 |
| ZrmI | AGTACT | 1 cut(s) | 511 |