Rroxscaffold_1G00003350

Homeodomain

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
4065583 .. 4066247
665 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00003350.1

Sequence Viewer

Length: 570 bp
ATGGAGCTTCAAACCCAGCAACAAATCGAGGATGGAGGAAACAACCAAGCAGCCGGGAGTAGTGCCAACACGCCTATCGTGCCGACTACTAACCGGTGGGCTCCCACACCAGCTCAACTAAGAATCCTTCGGGGGCTCTACTATGACAAGGATCACAAGTACCCAACTCCGGAAGCGATTCAAGAGATCCGTCTTCATCCGAAACCGTATGGGCGGATCGAGGACAAGAACGCCTTCTTTTGGTTCCGGAACCTCAAGGCTCGTGAGAGGTCGAAATTGAGGGAATTTCGAACGTTCGGTACCGACGGATCCATTGATCTAACTTTTGTGTCACGTGTCGACTATGGCGTTGACCCATATTCCTCCTCACCCTTCAACCCTAATACTAGTACTGCCTCCTTCGGCACAACAGGAGGACAAACTTCCATAGAACAACGAGGAGAAGATCACCAAGAGGTTGAAACTCTTCCTCTGTTCCCCGTGCACCGTGAGAACGTCCTTGGTAACCCGAAGACTACTTCCGAGGAAGGTAGCGCATATGGTTACTACTCCGGTGGCTCGGGCGGTTAG

Protein Analysis

189

Amino Acids

21.08

Weight (kDa)

5.83

Isoelectric Point (pI)

50.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 31 - 90 2.1e-06 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000180)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr0c19g0499991 RchiOBHm_Chr0c19g0500021 RchiOBHm_Chr0c19g0500131 RchiOBHm_Chr0c31g0501321 RchiOBHm_Chr0c31g0501441 RchiOBHm_Chr1g0365611 RchiOBHm_Chr1g0366061 RchiOBHm_Chr1g0367951 RchiOBHm_Chr1g0369471 RchiOBHm_Chr1g0377271 RchiOBHm_Chr1g0379021 RchiOBHm_Chr1g0379461 RchiOBHm_Chr1g0381431 RchiOBHm_Chr1g0383551 RchiOBHm_Chr1g0383621 RchiOBHm_Chr2g0120951 RchiOBHm_Chr2g0121321 RchiOBHm_Chr2g0121381 RchiOBHm_Chr2g0121801 RchiOBHm_Chr2g0121861 RchiOBHm_Chr2g0122211 RchiOBHm_Chr2g0122471 RchiOBHm_Chr2g0122511 RchiOBHm_Chr2g0122751 RchiOBHm_Chr2g0123361 RchiOBHm_Chr2g0124071 RchiOBHm_Chr2g0124341 RchiOBHm_Chr2g0124361 RchiOBHm_Chr2g0124511 RchiOBHm_Chr2g0124641 RchiOBHm_Chr2g0125051 RchiOBHm_Chr2g0125111 RchiOBHm_Chr2g0125641 RchiOBHm_Chr2g0125871 RchiOBHm_Chr2g0125901 RchiOBHm_Chr2g0126011 RchiOBHm_Chr2g0126291 RchiOBHm_Chr2g0126341 RchiOBHm_Chr2g0126611 RchiOBHm_Chr2g0126671 RchiOBHm_Chr2g0126701 RchiOBHm_Chr2g0127021 RchiOBHm_Chr2g0127071 RchiOBHm_Chr2g0127361 RchiOBHm_Chr2g0127691 RchiOBHm_Chr2g0128041 RchiOBHm_Chr2g0128051 RchiOBHm_Chr2g0128061 RchiOBHm_Chr2g0128141 RchiOBHm_Chr2g0128171 RchiOBHm_Chr2g0128181 RchiOBHm_Chr2g0128551 RchiOBHm_Chr2g0128991 RchiOBHm_Chr2g0130061 RchiOBHm_Chr2g0130391 RchiOBHm_Chr2g0130631 RchiOBHm_Chr2g0130921 RchiOBHm_Chr2g0132731 RchiOBHm_Chr2g0133461 RchiOBHm_Chr2g0133921 RchiOBHm_Chr2g0134031 RchiOBHm_Chr2g0134281 RchiOBHm_Chr2g0134351 RchiOBHm_Chr2g0135501 RchiOBHm_Chr2g0135821 RchiOBHm_Chr2g0135931 RchiOBHm_Chr2g0137501 RchiOBHm_Chr2g0139141 RchiOBHm_Chr2g0139511 RchiOBHm_Chr2g0142411 RchiOBHm_Chr2g0143261 RchiOBHm_Chr2g0144171 RchiOBHm_Chr2g0144741 RchiOBHm_Chr2g0144841 RchiOBHm_Chr2g0145021 RchiOBHm_Chr2g0145831 RchiOBHm_Chr2g0145881 RchiOBHm_Chr2g0146081 RchiOBHm_Chr2g0146141 RchiOBHm_Chr2g0146671 RchiOBHm_Chr2g0149001 RchiOBHm_Chr2g0151811 RchiOBHm_Chr2g0151821 RchiOBHm_Chr2g0151831 RchiOBHm_Chr2g0152051 RchiOBHm_Chr2g0154791 RchiOBHm_Chr2g0155541 RchiOBHm_Chr2g0160791 RchiOBHm_Chr2g0161631 RchiOBHm_Chr2g0162151 RchiOBHm_Chr2g0162751 RchiOBHm_Chr2g0166561 RchiOBHm_Chr2g0166751 RchiOBHm_Chr2g0168891 RchiOBHm_Chr2g0170211 RchiOBHm_Chr2g0170781 RchiOBHm_Chr2g0172831 RchiOBHm_Chr2g0174791 RchiOBHm_Chr3g0448081 RchiOBHm_Chr3g0449761 RchiOBHm_Chr3g0453291 RchiOBHm_Chr3g0456271 RchiOBHm_Chr3g0456461 RchiOBHm_Chr3g0458351 RchiOBHm_Chr3g0461411 RchiOBHm_Chr3g0461511 RchiOBHm_Chr3g0463871 RchiOBHm_Chr3g0467841 RchiOBHm_Chr3g0470081 RchiOBHm_Chr3g0470571 RchiOBHm_Chr7g0187061 RchiOBHm_Chr7g0187461 RchiOBHm_Chr7g0187681 RchiOBHm_Chr7g0189901 RchiOBHm_Chr7g0190271 RchiOBHm_Chr7g0193451 RchiOBHm_Chr7g0194081 RchiOBHm_Chr7g0195771 RchiOBHm_Chr7g0196301 RchiOBHm_Chr7g0196911
rosa_multiflora Rmu_sc0000236.1_g000047 Rmu_sc0000284.1_g000007 Rmu_sc0000288.1_g000006 Rmu_sc0000507.1_g000017 Rmu_sc0000580.1_g000015 Rmu_sc0000663.1_g000011 Rmu_sc0000675.1_g000024 Rmu_sc0000693.1_g000072 Rmu_sc0000779.1_g000005 Rmu_sc0000851.1_g000015 Rmu_sc0000962.1_g000001 Rmu_sc0001493.1_g000055 Rmu_sc0001669.1_g000025 Rmu_sc0001891.1_g000051 Rmu_sc0001926.1_g000007 Rmu_sc0002082.1_g000025 Rmu_sc0002141.1_g000001 Rmu_sc0002141.1_g000004 Rmu_sc0002414.1_g000012 Rmu_sc0002557.1_g000022 Rmu_sc0002709.1_g000038 Rmu_sc0002897.1_g000004 Rmu_sc0002934.1_g000055 Rmu_sc0003692.1_g000017 Rmu_sc0004283.1_g000068 Rmu_sc0004598.1_g000010 Rmu_sc0004614.1_g000004 Rmu_sc0004805.1_g000006 Rmu_sc0005142.1_g000041 Rmu_sc0005777.1_g000001 Rmu_sc0006420.1_g000019 Rmu_sc0006803.1_g000016 Rmu_sc0007034.1_g000015 Rmu_sc0008079.1_g000017 Rmu_sc0008148.1_g000040 Rmu_sc0008608.1_g000007 Rmu_sc0008675.1_g000001 Rmu_sc0009663.1_g000001 Rmu_sc0010188.1_g000003 Rmu_sc0010739.1_g000005 Rmu_sc0016265.1_g000001 Rmu_sc0031757.1_g000001 Rmu_ssc0000087.1_g000024 Rmu_ssc0000438.1_g000029
rosa_roxburghii Rroxscaffold_1G00003350
rosa_rugosa Rorug03G0248400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 299
AccB1I GGYRCC 1 cut(s) 299
AccI GTMKAC 1 cut(s) 339
AccIII TCCGGA 2 cut(s) 169, 246
AciI CCGC 2 cut(s) 214, 564
AclI AACGTT 1 cut(s) 293
AclWI GGATC 5 cut(s) 159, 181, 224, 303, 316
AcsI RAATTY 1 cut(s) 284
AcvI CACGTG 1 cut(s) 335
AfaI GTAC 3 cut(s) 161, 301, 391
AfiI CCNNNNNNNGG 2 cut(s) 169, 240
AflIII ACRYGT 1 cut(s) 334
AgeI ACCGGT 1 cut(s) 93
AgsI TTSAA 4 cut(s) 11, 182, 376, 461
AhlI ACTAGT 1 cut(s) 386
AluBI AGCT 2 cut(s) 7, 113
AluI AGCT 2 cut(s) 7, 113
Alw21I GWGCWC 1 cut(s) 486
Alw44I GTGCAC 1 cut(s) 482
AlwI GGATC 5 cut(s) 159, 181, 224, 303, 316
Ama87I CYCGRG 1 cut(s) 559
Aor13HI TCCGGA 2 cut(s) 169, 246
ApaLI GTGCAC 1 cut(s) 482
ApeKI GCWGC 1 cut(s) 50
ApoI RAATTY 1 cut(s) 284
AsiGI ACCGGT 1 cut(s) 93
Asp700I GAANNNNTTC 3 cut(s) 177, 233, 465
Asp718I GGTACC 1 cut(s) 299
AspLEI GCGC 1 cut(s) 536
AsuC2I CCSGG 1 cut(s) 55
AsuHPI GGTGA 2 cut(s) 360, 440
AsuII TTCGAA 1 cut(s) 289
AvaI CYCGRG 1 cut(s) 559
BaeGI GKGCMC 1 cut(s) 486
BamHI GGATCC 1 cut(s) 308
BanI GGYRCC 1 cut(s) 299
BanII GRGCYC 2 cut(s) 103, 138
BauI CACGAG 1 cut(s) 261
BbrPI CACGTG 1 cut(s) 335
BbsI GAAGAC 2 cut(s) 185, 518
Bbv12I GWGCWC 1 cut(s) 486
BbvI GCAGC 1 cut(s) 62
BccI CCATC 1 cut(s) 26
BcnI CCSGG 1 cut(s) 55
BcuI ACTAGT 1 cut(s) 386
BfaI CTAG 1 cut(s) 387
BisI GCNGC 1 cut(s) 51
BlsI GCNGC 1 cut(s) 52
BmcAI AGTACT 1 cut(s) 391
Bme1390I CCNGG 1 cut(s) 55
BmeT110I CYCGRG 1 cut(s) 559
BmiI GGNNCC 5 cut(s) 102, 245, 251, 301, 310
BmrFI CCNGG 1 cut(s) 55
BpiI GAAGAC 2 cut(s) 185, 518
Bpu14I TTCGAA 1 cut(s) 289
BpuEI CTTGAG 1 cut(s) 239
BpuMI CCSGG 1 cut(s) 55
BsaAI YACGTR 1 cut(s) 335
BsaJI CCNNGG 2 cut(s) 499, 522
BsaWI WCCGGW 4 cut(s) 93, 169, 246, 551
Bsc4I CCNNNNNNNGG 2 cut(s) 169, 240
Bse118I RCCGGY 1 cut(s) 93
BseAI TCCGGA 2 cut(s) 169, 246
BseDI CCNNGG 2 cut(s) 499, 522
BseGI GGATG 2 cut(s) 37, 196
BseLI CCNNNNNNNGG 2 cut(s) 169, 240
BseRI GAGGAG 2 cut(s) 355, 453
BseSI GKGCMC 1 cut(s) 486
BseXI GCAGC 1 cut(s) 62
BseYI CCCAGC 1 cut(s) 15
BshNI GGYRCC 1 cut(s) 299
BshTI ACCGGT 1 cut(s) 93
BsiHKAI GWGCWC 1 cut(s) 486
BsiHKCI CYCGRG 1 cut(s) 559
BsiSI CCGG 5 cut(s) 54, 94, 170, 247, 552
BslI CCNNNNNNNGG 2 cut(s) 169, 240
BsoBI CYCGRG 1 cut(s) 559
Bsp119I TTCGAA 1 cut(s) 289
Bsp1286I GDGCHC 3 cut(s) 103, 138, 486
Bsp13I TCCGGA 2 cut(s) 169, 246
Bsp143I GATC 6 cut(s) 151, 186, 216, 308, 316, 445
BspACI CCGC 2 cut(s) 214, 564
BspEI TCCGGA 2 cut(s) 169, 246
BspLI GGNNCC 5 cut(s) 102, 245, 251, 301, 310
BspPI GGATC 5 cut(s) 159, 181, 224, 303, 316
BspT104I TTCGAA 1 cut(s) 289
BspT107I GGYRCC 1 cut(s) 299
BsrFI RCCGGY 1 cut(s) 93
BssAI RCCGGY 1 cut(s) 93
BssECI CCNNGG 2 cut(s) 499, 522
BssMI GATC 6 cut(s) 151, 186, 216, 308, 316, 445
BssSI CACGAG 1 cut(s) 261
BssT1I CCWWGG 1 cut(s) 499
Bst2BI CACGAG 1 cut(s) 261
Bst4CI ACNGT 2 cut(s) 207, 488
Bst6I CTCTTC 1 cut(s) 471
BstBAI YACGTR 1 cut(s) 335
BstBI TTCGAA 1 cut(s) 289
BstDEI CTNAG 1 cut(s) 119
BstEII GGTNACC 1 cut(s) 503
BstF5I GGATG 2 cut(s) 37, 196
BstHHI GCGC 1 cut(s) 536
BstKTI GATC 6 cut(s) 154, 189, 219, 311, 319, 448
BstMBI GATC 6 cut(s) 151, 186, 216, 308, 316, 445
BstMWI GCNNNNNNNGC 1 cut(s) 79
BstPI GGTNACC 1 cut(s) 503
BstSCI CCNGG 1 cut(s) 53
BstSLI GKGCMC 1 cut(s) 486
BstV1I GCAGC 1 cut(s) 62
BstV2I GAAGAC 2 cut(s) 185, 518
BstX2I RGATCY 2 cut(s) 186, 308
BstYI RGATCY 2 cut(s) 186, 308
BtsCI GGATG 2 cut(s) 37, 196
CfoI GCGC 1 cut(s) 536
Cfr10I RCCGGY 1 cut(s) 93
Csp6I GTAC 3 cut(s) 160, 300, 390
CspAI ACCGGT 1 cut(s) 93
CviJI RGCY 7 cut(s) 7, 53, 101, 113, 136, 260, 558
CviKI_1 RGCY 7 cut(s) 7, 53, 101, 113, 136, 260, 558
CviQI GTAC 3 cut(s) 160, 300, 390
DdeI CTNAG 1 cut(s) 119
DpnI GATC 6 cut(s) 153, 188, 218, 310, 318, 447
DpnII GATC 6 cut(s) 151, 186, 216, 308, 316, 445
Eam1104I CTCTTC 1 cut(s) 471
EarI CTCTTC 1 cut(s) 471
EciI GGCGGA 1 cut(s) 229
Eco130I CCWWGG 1 cut(s) 499
Eco24I GRGCYC 2 cut(s) 103, 138
Eco72I CACGTG 1 cut(s) 335
Eco88I CYCGRG 1 cut(s) 559
Eco91I GGTNACC 1 cut(s) 503
EcoO65I GGTNACC 1 cut(s) 503
EcoT14I CCWWGG 1 cut(s) 499
EcoT38I GRGCYC 2 cut(s) 103, 138
ErhI CCWWGG 1 cut(s) 499
FaiI YATR 7 cut(s) 144, 210, 345, 358, 428, 538, 540
FalI AAGNNNNNCTT 2 cut(s) 218, 250
FauNDI CATATG 1 cut(s) 538
FblI GTMKAC 1 cut(s) 339
Fnu4HI GCNGC 1 cut(s) 51
FokI GGATG 2 cut(s) 44, 183
FriOI GRGCYC 2 cut(s) 103, 138
Fsp4HI GCNGC 1 cut(s) 51
FspBI CTAG 1 cut(s) 387
GlaI GCGC 1 cut(s) 535
GluI GCNGC 1 cut(s) 51
GsaI CCCAGC 1 cut(s) 19
HapII CCGG 5 cut(s) 54, 94, 170, 247, 552
HhaI GCGC 1 cut(s) 536
Hin6I GCGC 1 cut(s) 534
HinP1I GCGC 1 cut(s) 534
HincII GTYRAC 2 cut(s) 340, 352
HindII GTYRAC 2 cut(s) 340, 352
HinfI GANTC 2 cut(s) 123, 178
HpaII CCGG 5 cut(s) 54, 94, 170, 247, 552
HphI GGTGA 2 cut(s) 360, 440
Hpy166II GTNNAC 3 cut(s) 340, 352, 484
Hpy188I TCNGA 2 cut(s) 201, 523
Hpy188III TCNNGA 4 cut(s) 170, 182, 247, 263
Hpy8I GTNNAC 3 cut(s) 340, 352, 484
Hpy99I CGWCG 1 cut(s) 308
HpyAV CCTTC 5 cut(s) 137, 244, 382, 409, 521
HpyCH4III ACNGT 2 cut(s) 207, 488
HpyCH4IV ACGT 3 cut(s) 293, 334, 495
HpyCH4V TGCA 1 cut(s) 484
HpyF10VI GCNNNNNNNGC 1 cut(s) 79
HpyF3I CTNAG 1 cut(s) 119
HpySE526I ACGT 3 cut(s) 293, 334, 495
HspAI GCGC 1 cut(s) 534
Kpn2I TCCGGA 2 cut(s) 169, 246
KpnI GGTACC 1 cut(s) 303
Kzo9I GATC 6 cut(s) 151, 186, 216, 308, 316, 445
LmnI GCTCC 2 cut(s) 4, 106
LpnPI CCDG 8 cut(s) 29, 67, 107, 123, 183, 260, 396, 565
Lsp1109I GCAGC 1 cut(s) 62
MaeI CTAG 1 cut(s) 387
MaeII ACGT 3 cut(s) 293, 334, 495
MaeIII GTNAC 3 cut(s) 330, 503, 542
MalI GATC 6 cut(s) 153, 188, 218, 310, 318, 447
MboI GATC 6 cut(s) 151, 186, 216, 308, 316, 445
MboII GAAGA 4 cut(s) 185, 455, 458, 523
MflI RGATCY 2 cut(s) 186, 308
MhlI GDGCHC 3 cut(s) 103, 138, 486
MluCI AATT 2 cut(s) 275, 284
MroI TCCGGA 2 cut(s) 169, 246
MroXI GAANNNNTTC 3 cut(s) 177, 233, 465
MspI CCGG 5 cut(s) 54, 94, 170, 247, 552
MspR9I CCNGG 1 cut(s) 55
MwoI GCNNNNNNNGC 1 cut(s) 79
NciI CCSGG 1 cut(s) 55
NdeI CATATG 1 cut(s) 538
NdeII GATC 6 cut(s) 151, 186, 216, 308, 316, 445
NlaIV GGNNCC 5 cut(s) 102, 245, 251, 301, 310
NmuCI GTSAC 1 cut(s) 330
NspV TTCGAA 1 cut(s) 289
PcsI WCGNNNNNNNCGW 1 cut(s) 345
PdmI GAANNNNTTC 3 cut(s) 177, 233, 465
PfeI GAWTC 2 cut(s) 123, 178
PinAI ACCGGT 1 cut(s) 93
PkrI GCNGC 1 cut(s) 52
PmaCI CACGTG 1 cut(s) 335
PmlI CACGTG 1 cut(s) 335
Ppu21I YACGTR 1 cut(s) 335
Psp1406I AACGTT 1 cut(s) 293
PspCI CACGTG 1 cut(s) 335
PspEI GGTNACC 1 cut(s) 503
PspFI CCCAGC 1 cut(s) 15
PspN4I GGNNCC 5 cut(s) 102, 245, 251, 301, 310
PsrI GAACNNNNNNTAC 2 cut(s) 283, 315
PsuI RGATCY 2 cut(s) 186, 308
RsaI GTAC 3 cut(s) 161, 301, 391
RsaNI GTAC 3 cut(s) 160, 300, 390
SalI GTCGAC 1 cut(s) 338
SatI GCNGC 1 cut(s) 51
Sau3AI GATC 6 cut(s) 151, 186, 216, 308, 316, 445
ScaI AGTACT 1 cut(s) 391
ScrFI CCNGG 1 cut(s) 55
SduI GDGCHC 3 cut(s) 103, 138, 486
SetI ASST 9 cut(s) 9, 115, 255, 272, 296, 337, 459, 498, 532
SfuI TTCGAA 1 cut(s) 289
SmlI CTYRAG 1 cut(s) 254
SmoI CTYRAG 1 cut(s) 254
SpeI ACTAGT 1 cut(s) 386
Sse9I AATT 2 cut(s) 275, 284
SsiI CCGC 2 cut(s) 214, 564
SspMI CTAG 1 cut(s) 387
StyD4I CCNGG 1 cut(s) 53
StyI CCWWGG 1 cut(s) 499
TaaI ACNGT 2 cut(s) 207, 488
TaiI ACGT 3 cut(s) 296, 337, 498
TaqI TCGA 5 cut(s) 27, 219, 272, 289, 339
TasI AATT 2 cut(s) 275, 284
TatI WGTACW 1 cut(s) 389
TfiI GAWTC 2 cut(s) 123, 178
TseFI GTSAC 1 cut(s) 330
TseI GCWGC 1 cut(s) 50
Tsp45I GTSAC 1 cut(s) 330
TspDTI ATGAA 1 cut(s) 185
TspGWI ACGGA 2 cut(s) 179, 321
VneI GTGCAC 1 cut(s) 482
XapI RAATTY 1 cut(s) 284
XmiI GTMKAC 1 cut(s) 339
XmnI GAANNNNTTC 3 cut(s) 177, 233, 465
XspI CTAG 1 cut(s) 387
ZrmI AGTACT 1 cut(s) 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.