Homeodomain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Homeodomain | PF00046 | 31 - 90 | 2.1e-06 | Homeodomain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 299 |
| AccB1I | GGYRCC | 1 cut(s) | 299 |
| AccI | GTMKAC | 1 cut(s) | 339 |
| AccIII | TCCGGA | 2 cut(s) | 169, 246 |
| AciI | CCGC | 2 cut(s) | 214, 564 |
| AclI | AACGTT | 1 cut(s) | 293 |
| AclWI | GGATC | 5 cut(s) | 159, 181, 224, 303, 316 |
| AcsI | RAATTY | 1 cut(s) | 284 |
| AcvI | CACGTG | 1 cut(s) | 335 |
| AfaI | GTAC | 3 cut(s) | 161, 301, 391 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 169, 240 |
| AflIII | ACRYGT | 1 cut(s) | 334 |
| AgeI | ACCGGT | 1 cut(s) | 93 |
| AgsI | TTSAA | 4 cut(s) | 11, 182, 376, 461 |
| AhlI | ACTAGT | 1 cut(s) | 386 |
| AluBI | AGCT | 2 cut(s) | 7, 113 |
| AluI | AGCT | 2 cut(s) | 7, 113 |
| Alw21I | GWGCWC | 1 cut(s) | 486 |
| Alw44I | GTGCAC | 1 cut(s) | 482 |
| AlwI | GGATC | 5 cut(s) | 159, 181, 224, 303, 316 |
| Ama87I | CYCGRG | 1 cut(s) | 559 |
| Aor13HI | TCCGGA | 2 cut(s) | 169, 246 |
| ApaLI | GTGCAC | 1 cut(s) | 482 |
| ApeKI | GCWGC | 1 cut(s) | 50 |
| ApoI | RAATTY | 1 cut(s) | 284 |
| AsiGI | ACCGGT | 1 cut(s) | 93 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 177, 233, 465 |
| Asp718I | GGTACC | 1 cut(s) | 299 |
| AspLEI | GCGC | 1 cut(s) | 536 |
| AsuC2I | CCSGG | 1 cut(s) | 55 |
| AsuHPI | GGTGA | 2 cut(s) | 360, 440 |
| AsuII | TTCGAA | 1 cut(s) | 289 |
| AvaI | CYCGRG | 1 cut(s) | 559 |
| BaeGI | GKGCMC | 1 cut(s) | 486 |
| BamHI | GGATCC | 1 cut(s) | 308 |
| BanI | GGYRCC | 1 cut(s) | 299 |
| BanII | GRGCYC | 2 cut(s) | 103, 138 |
| BauI | CACGAG | 1 cut(s) | 261 |
| BbrPI | CACGTG | 1 cut(s) | 335 |
| BbsI | GAAGAC | 2 cut(s) | 185, 518 |
| Bbv12I | GWGCWC | 1 cut(s) | 486 |
| BbvI | GCAGC | 1 cut(s) | 62 |
| BccI | CCATC | 1 cut(s) | 26 |
| BcnI | CCSGG | 1 cut(s) | 55 |
| BcuI | ACTAGT | 1 cut(s) | 386 |
| BfaI | CTAG | 1 cut(s) | 387 |
| BisI | GCNGC | 1 cut(s) | 51 |
| BlsI | GCNGC | 1 cut(s) | 52 |
| BmcAI | AGTACT | 1 cut(s) | 391 |
| Bme1390I | CCNGG | 1 cut(s) | 55 |
| BmeT110I | CYCGRG | 1 cut(s) | 559 |
| BmiI | GGNNCC | 5 cut(s) | 102, 245, 251, 301, 310 |
| BmrFI | CCNGG | 1 cut(s) | 55 |
| BpiI | GAAGAC | 2 cut(s) | 185, 518 |
| Bpu14I | TTCGAA | 1 cut(s) | 289 |
| BpuEI | CTTGAG | 1 cut(s) | 239 |
| BpuMI | CCSGG | 1 cut(s) | 55 |
| BsaAI | YACGTR | 1 cut(s) | 335 |
| BsaJI | CCNNGG | 2 cut(s) | 499, 522 |
| BsaWI | WCCGGW | 4 cut(s) | 93, 169, 246, 551 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 169, 240 |
| Bse118I | RCCGGY | 1 cut(s) | 93 |
| BseAI | TCCGGA | 2 cut(s) | 169, 246 |
| BseDI | CCNNGG | 2 cut(s) | 499, 522 |
| BseGI | GGATG | 2 cut(s) | 37, 196 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 169, 240 |
| BseRI | GAGGAG | 2 cut(s) | 355, 453 |
| BseSI | GKGCMC | 1 cut(s) | 486 |
| BseXI | GCAGC | 1 cut(s) | 62 |
| BseYI | CCCAGC | 1 cut(s) | 15 |
| BshNI | GGYRCC | 1 cut(s) | 299 |
| BshTI | ACCGGT | 1 cut(s) | 93 |
| BsiHKAI | GWGCWC | 1 cut(s) | 486 |
| BsiHKCI | CYCGRG | 1 cut(s) | 559 |
| BsiSI | CCGG | 5 cut(s) | 54, 94, 170, 247, 552 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 169, 240 |
| BsoBI | CYCGRG | 1 cut(s) | 559 |
| Bsp119I | TTCGAA | 1 cut(s) | 289 |
| Bsp1286I | GDGCHC | 3 cut(s) | 103, 138, 486 |
| Bsp13I | TCCGGA | 2 cut(s) | 169, 246 |
| Bsp143I | GATC | 6 cut(s) | 151, 186, 216, 308, 316, 445 |
| BspACI | CCGC | 2 cut(s) | 214, 564 |
| BspEI | TCCGGA | 2 cut(s) | 169, 246 |
| BspLI | GGNNCC | 5 cut(s) | 102, 245, 251, 301, 310 |
| BspPI | GGATC | 5 cut(s) | 159, 181, 224, 303, 316 |
| BspT104I | TTCGAA | 1 cut(s) | 289 |
| BspT107I | GGYRCC | 1 cut(s) | 299 |
| BsrFI | RCCGGY | 1 cut(s) | 93 |
| BssAI | RCCGGY | 1 cut(s) | 93 |
| BssECI | CCNNGG | 2 cut(s) | 499, 522 |
| BssMI | GATC | 6 cut(s) | 151, 186, 216, 308, 316, 445 |
| BssSI | CACGAG | 1 cut(s) | 261 |
| BssT1I | CCWWGG | 1 cut(s) | 499 |
| Bst2BI | CACGAG | 1 cut(s) | 261 |
| Bst4CI | ACNGT | 2 cut(s) | 207, 488 |
| Bst6I | CTCTTC | 1 cut(s) | 471 |
| BstBAI | YACGTR | 1 cut(s) | 335 |
| BstBI | TTCGAA | 1 cut(s) | 289 |
| BstDEI | CTNAG | 1 cut(s) | 119 |
| BstEII | GGTNACC | 1 cut(s) | 503 |
| BstF5I | GGATG | 2 cut(s) | 37, 196 |
| BstHHI | GCGC | 1 cut(s) | 536 |
| BstKTI | GATC | 6 cut(s) | 154, 189, 219, 311, 319, 448 |
| BstMBI | GATC | 6 cut(s) | 151, 186, 216, 308, 316, 445 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 79 |
| BstPI | GGTNACC | 1 cut(s) | 503 |
| BstSCI | CCNGG | 1 cut(s) | 53 |
| BstSLI | GKGCMC | 1 cut(s) | 486 |
| BstV1I | GCAGC | 1 cut(s) | 62 |
| BstV2I | GAAGAC | 2 cut(s) | 185, 518 |
| BstX2I | RGATCY | 2 cut(s) | 186, 308 |
| BstYI | RGATCY | 2 cut(s) | 186, 308 |
| BtsCI | GGATG | 2 cut(s) | 37, 196 |
| CfoI | GCGC | 1 cut(s) | 536 |
| Cfr10I | RCCGGY | 1 cut(s) | 93 |
| Csp6I | GTAC | 3 cut(s) | 160, 300, 390 |
| CspAI | ACCGGT | 1 cut(s) | 93 |
| CviJI | RGCY | 7 cut(s) | 7, 53, 101, 113, 136, 260, 558 |
| CviKI_1 | RGCY | 7 cut(s) | 7, 53, 101, 113, 136, 260, 558 |
| CviQI | GTAC | 3 cut(s) | 160, 300, 390 |
| DdeI | CTNAG | 1 cut(s) | 119 |
| DpnI | GATC | 6 cut(s) | 153, 188, 218, 310, 318, 447 |
| DpnII | GATC | 6 cut(s) | 151, 186, 216, 308, 316, 445 |
| Eam1104I | CTCTTC | 1 cut(s) | 471 |
| EarI | CTCTTC | 1 cut(s) | 471 |
| EciI | GGCGGA | 1 cut(s) | 229 |
| Eco130I | CCWWGG | 1 cut(s) | 499 |
| Eco24I | GRGCYC | 2 cut(s) | 103, 138 |
| Eco72I | CACGTG | 1 cut(s) | 335 |
| Eco88I | CYCGRG | 1 cut(s) | 559 |
| Eco91I | GGTNACC | 1 cut(s) | 503 |
| EcoO65I | GGTNACC | 1 cut(s) | 503 |
| EcoT14I | CCWWGG | 1 cut(s) | 499 |
| EcoT38I | GRGCYC | 2 cut(s) | 103, 138 |
| ErhI | CCWWGG | 1 cut(s) | 499 |
| FaiI | YATR | 7 cut(s) | 144, 210, 345, 358, 428, 538, 540 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 218, 250 |
| FauNDI | CATATG | 1 cut(s) | 538 |
| FblI | GTMKAC | 1 cut(s) | 339 |
| Fnu4HI | GCNGC | 1 cut(s) | 51 |
| FokI | GGATG | 2 cut(s) | 44, 183 |
| FriOI | GRGCYC | 2 cut(s) | 103, 138 |
| Fsp4HI | GCNGC | 1 cut(s) | 51 |
| FspBI | CTAG | 1 cut(s) | 387 |
| GlaI | GCGC | 1 cut(s) | 535 |
| GluI | GCNGC | 1 cut(s) | 51 |
| GsaI | CCCAGC | 1 cut(s) | 19 |
| HapII | CCGG | 5 cut(s) | 54, 94, 170, 247, 552 |
| HhaI | GCGC | 1 cut(s) | 536 |
| Hin6I | GCGC | 1 cut(s) | 534 |
| HinP1I | GCGC | 1 cut(s) | 534 |
| HincII | GTYRAC | 2 cut(s) | 340, 352 |
| HindII | GTYRAC | 2 cut(s) | 340, 352 |
| HinfI | GANTC | 2 cut(s) | 123, 178 |
| HpaII | CCGG | 5 cut(s) | 54, 94, 170, 247, 552 |
| HphI | GGTGA | 2 cut(s) | 360, 440 |
| Hpy166II | GTNNAC | 3 cut(s) | 340, 352, 484 |
| Hpy188I | TCNGA | 2 cut(s) | 201, 523 |
| Hpy188III | TCNNGA | 4 cut(s) | 170, 182, 247, 263 |
| Hpy8I | GTNNAC | 3 cut(s) | 340, 352, 484 |
| Hpy99I | CGWCG | 1 cut(s) | 308 |
| HpyAV | CCTTC | 5 cut(s) | 137, 244, 382, 409, 521 |
| HpyCH4III | ACNGT | 2 cut(s) | 207, 488 |
| HpyCH4IV | ACGT | 3 cut(s) | 293, 334, 495 |
| HpyCH4V | TGCA | 1 cut(s) | 484 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 79 |
| HpyF3I | CTNAG | 1 cut(s) | 119 |
| HpySE526I | ACGT | 3 cut(s) | 293, 334, 495 |
| HspAI | GCGC | 1 cut(s) | 534 |
| Kpn2I | TCCGGA | 2 cut(s) | 169, 246 |
| KpnI | GGTACC | 1 cut(s) | 303 |
| Kzo9I | GATC | 6 cut(s) | 151, 186, 216, 308, 316, 445 |
| LmnI | GCTCC | 2 cut(s) | 4, 106 |
| LpnPI | CCDG | 8 cut(s) | 29, 67, 107, 123, 183, 260, 396, 565 |
| Lsp1109I | GCAGC | 1 cut(s) | 62 |
| MaeI | CTAG | 1 cut(s) | 387 |
| MaeII | ACGT | 3 cut(s) | 293, 334, 495 |
| MaeIII | GTNAC | 3 cut(s) | 330, 503, 542 |
| MalI | GATC | 6 cut(s) | 153, 188, 218, 310, 318, 447 |
| MboI | GATC | 6 cut(s) | 151, 186, 216, 308, 316, 445 |
| MboII | GAAGA | 4 cut(s) | 185, 455, 458, 523 |
| MflI | RGATCY | 2 cut(s) | 186, 308 |
| MhlI | GDGCHC | 3 cut(s) | 103, 138, 486 |
| MluCI | AATT | 2 cut(s) | 275, 284 |
| MroI | TCCGGA | 2 cut(s) | 169, 246 |
| MroXI | GAANNNNTTC | 3 cut(s) | 177, 233, 465 |
| MspI | CCGG | 5 cut(s) | 54, 94, 170, 247, 552 |
| MspR9I | CCNGG | 1 cut(s) | 55 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 79 |
| NciI | CCSGG | 1 cut(s) | 55 |
| NdeI | CATATG | 1 cut(s) | 538 |
| NdeII | GATC | 6 cut(s) | 151, 186, 216, 308, 316, 445 |
| NlaIV | GGNNCC | 5 cut(s) | 102, 245, 251, 301, 310 |
| NmuCI | GTSAC | 1 cut(s) | 330 |
| NspV | TTCGAA | 1 cut(s) | 289 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 345 |
| PdmI | GAANNNNTTC | 3 cut(s) | 177, 233, 465 |
| PfeI | GAWTC | 2 cut(s) | 123, 178 |
| PinAI | ACCGGT | 1 cut(s) | 93 |
| PkrI | GCNGC | 1 cut(s) | 52 |
| PmaCI | CACGTG | 1 cut(s) | 335 |
| PmlI | CACGTG | 1 cut(s) | 335 |
| Ppu21I | YACGTR | 1 cut(s) | 335 |
| Psp1406I | AACGTT | 1 cut(s) | 293 |
| PspCI | CACGTG | 1 cut(s) | 335 |
| PspEI | GGTNACC | 1 cut(s) | 503 |
| PspFI | CCCAGC | 1 cut(s) | 15 |
| PspN4I | GGNNCC | 5 cut(s) | 102, 245, 251, 301, 310 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 283, 315 |
| PsuI | RGATCY | 2 cut(s) | 186, 308 |
| RsaI | GTAC | 3 cut(s) | 161, 301, 391 |
| RsaNI | GTAC | 3 cut(s) | 160, 300, 390 |
| SalI | GTCGAC | 1 cut(s) | 338 |
| SatI | GCNGC | 1 cut(s) | 51 |
| Sau3AI | GATC | 6 cut(s) | 151, 186, 216, 308, 316, 445 |
| ScaI | AGTACT | 1 cut(s) | 391 |
| ScrFI | CCNGG | 1 cut(s) | 55 |
| SduI | GDGCHC | 3 cut(s) | 103, 138, 486 |
| SetI | ASST | 9 cut(s) | 9, 115, 255, 272, 296, 337, 459, 498, 532 |
| SfuI | TTCGAA | 1 cut(s) | 289 |
| SmlI | CTYRAG | 1 cut(s) | 254 |
| SmoI | CTYRAG | 1 cut(s) | 254 |
| SpeI | ACTAGT | 1 cut(s) | 386 |
| Sse9I | AATT | 2 cut(s) | 275, 284 |
| SsiI | CCGC | 2 cut(s) | 214, 564 |
| SspMI | CTAG | 1 cut(s) | 387 |
| StyD4I | CCNGG | 1 cut(s) | 53 |
| StyI | CCWWGG | 1 cut(s) | 499 |
| TaaI | ACNGT | 2 cut(s) | 207, 488 |
| TaiI | ACGT | 3 cut(s) | 296, 337, 498 |
| TaqI | TCGA | 5 cut(s) | 27, 219, 272, 289, 339 |
| TasI | AATT | 2 cut(s) | 275, 284 |
| TatI | WGTACW | 1 cut(s) | 389 |
| TfiI | GAWTC | 2 cut(s) | 123, 178 |
| TseFI | GTSAC | 1 cut(s) | 330 |
| TseI | GCWGC | 1 cut(s) | 50 |
| Tsp45I | GTSAC | 1 cut(s) | 330 |
| TspDTI | ATGAA | 1 cut(s) | 185 |
| TspGWI | ACGGA | 2 cut(s) | 179, 321 |
| VneI | GTGCAC | 1 cut(s) | 482 |
| XapI | RAATTY | 1 cut(s) | 284 |
| XmiI | GTMKAC | 1 cut(s) | 339 |
| XmnI | GAANNNNTTC | 3 cut(s) | 177, 233, 465 |
| XspI | CTAG | 1 cut(s) | 387 |
| ZrmI | AGTACT | 1 cut(s) | 391 |