RchiOBHm_Chr2g0144741

Homeodomain

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
62330368 .. 62330979
612 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51465

Sequence Viewer

Length: 612 bp
ATGAGGCCTACCGAGGAGGGAGGAAGCATCCAAGCAGCCGGGAGTAGTAACCGGTGGGCTCCCACACCGCCTCAACTAAGAATCCTCAAGGGCCTTTACTATGATAAGGGTTTTAAGTACCCAACTCCAGAGCAGATTCAAGAGATCTGCCTTCATCTGAAACAGTATGGGCAGATCGAGGACAAGAACGTCTTCTTTTGGTTCCAGAACCTCAAGGCTCGTGAGAGGCAGAAGTTGAAGGAATTTCGGAACGTTCCGGTTGGTGGATCTCTCGATCTCAATTTTGGATCCACTAGTTCTACTGATGATGGTAGATCTATTGATCTAAACTTTGGGTCACGTGTCGGCTATGGTGTTGACCCATATTCCTCCTCACCCTTCAACACTAATACCAGTACTACCTCCTTTGGCACAACAGGAGGACAATCTTTCATGGAACAACGAGGAGGAGATCACCAGGAGATTGAAACCCTTCCACTATTCCCCATGCATGGTGAGGACATCTTTGGCAACATGAAGACTACTTCCGAGGGAGGTAGCGGCTATGGCGGTGACTCTCGCATTTCCCTTGAGCTCAGCCTCAACTCCTACAAAGATGCAGACATGGCTTAG

Protein Analysis

203

Amino Acids

22.46

Weight (kDa)

5.25

Isoelectric Point (pI)

49.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 17 - 77 1.2e-10 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000180)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr0c19g0499991 RchiOBHm_Chr0c19g0500021 RchiOBHm_Chr0c19g0500131 RchiOBHm_Chr0c31g0501321 RchiOBHm_Chr0c31g0501441 RchiOBHm_Chr1g0365611 RchiOBHm_Chr1g0366061 RchiOBHm_Chr1g0367951 RchiOBHm_Chr1g0369471 RchiOBHm_Chr1g0377271 RchiOBHm_Chr1g0379021 RchiOBHm_Chr1g0379461 RchiOBHm_Chr1g0381431 RchiOBHm_Chr1g0383551 RchiOBHm_Chr1g0383621 RchiOBHm_Chr2g0120951 RchiOBHm_Chr2g0121321 RchiOBHm_Chr2g0121381 RchiOBHm_Chr2g0121801 RchiOBHm_Chr2g0121861 RchiOBHm_Chr2g0122211 RchiOBHm_Chr2g0122471 RchiOBHm_Chr2g0122511 RchiOBHm_Chr2g0122751 RchiOBHm_Chr2g0123361 RchiOBHm_Chr2g0124071 RchiOBHm_Chr2g0124341 RchiOBHm_Chr2g0124361 RchiOBHm_Chr2g0124511 RchiOBHm_Chr2g0124641 RchiOBHm_Chr2g0125051 RchiOBHm_Chr2g0125111 RchiOBHm_Chr2g0125641 RchiOBHm_Chr2g0125871 RchiOBHm_Chr2g0125901 RchiOBHm_Chr2g0126011 RchiOBHm_Chr2g0126291 RchiOBHm_Chr2g0126341 RchiOBHm_Chr2g0126611 RchiOBHm_Chr2g0126671 RchiOBHm_Chr2g0126701 RchiOBHm_Chr2g0127021 RchiOBHm_Chr2g0127071 RchiOBHm_Chr2g0127361 RchiOBHm_Chr2g0127691 RchiOBHm_Chr2g0128041 RchiOBHm_Chr2g0128051 RchiOBHm_Chr2g0128061 RchiOBHm_Chr2g0128141 RchiOBHm_Chr2g0128171 RchiOBHm_Chr2g0128181 RchiOBHm_Chr2g0128551 RchiOBHm_Chr2g0128991 RchiOBHm_Chr2g0130061 RchiOBHm_Chr2g0130391 RchiOBHm_Chr2g0130631 RchiOBHm_Chr2g0130921 RchiOBHm_Chr2g0132731 RchiOBHm_Chr2g0133461 RchiOBHm_Chr2g0133921 RchiOBHm_Chr2g0134031 RchiOBHm_Chr2g0134281 RchiOBHm_Chr2g0134351 RchiOBHm_Chr2g0135501 RchiOBHm_Chr2g0135821 RchiOBHm_Chr2g0135931 RchiOBHm_Chr2g0137501 RchiOBHm_Chr2g0139141 RchiOBHm_Chr2g0139511 RchiOBHm_Chr2g0142411 RchiOBHm_Chr2g0143261 RchiOBHm_Chr2g0144171 RchiOBHm_Chr2g0144741 RchiOBHm_Chr2g0144841 RchiOBHm_Chr2g0145021 RchiOBHm_Chr2g0145831 RchiOBHm_Chr2g0145881 RchiOBHm_Chr2g0146081 RchiOBHm_Chr2g0146141 RchiOBHm_Chr2g0146671 RchiOBHm_Chr2g0149001 RchiOBHm_Chr2g0151811 RchiOBHm_Chr2g0151821 RchiOBHm_Chr2g0151831 RchiOBHm_Chr2g0152051 RchiOBHm_Chr2g0154791 RchiOBHm_Chr2g0155541 RchiOBHm_Chr2g0160791 RchiOBHm_Chr2g0161631 RchiOBHm_Chr2g0162151 RchiOBHm_Chr2g0162751 RchiOBHm_Chr2g0166561 RchiOBHm_Chr2g0166751 RchiOBHm_Chr2g0168891 RchiOBHm_Chr2g0170211 RchiOBHm_Chr2g0170781 RchiOBHm_Chr2g0172831 RchiOBHm_Chr2g0174791 RchiOBHm_Chr3g0448081 RchiOBHm_Chr3g0449761 RchiOBHm_Chr3g0453291 RchiOBHm_Chr3g0456271 RchiOBHm_Chr3g0456461 RchiOBHm_Chr3g0458351 RchiOBHm_Chr3g0461411 RchiOBHm_Chr3g0461511 RchiOBHm_Chr3g0463871 RchiOBHm_Chr3g0467841 RchiOBHm_Chr3g0470081 RchiOBHm_Chr3g0470571 RchiOBHm_Chr7g0187061 RchiOBHm_Chr7g0187461 RchiOBHm_Chr7g0187681 RchiOBHm_Chr7g0189901 RchiOBHm_Chr7g0190271 RchiOBHm_Chr7g0193451 RchiOBHm_Chr7g0194081 RchiOBHm_Chr7g0195771 RchiOBHm_Chr7g0196301 RchiOBHm_Chr7g0196911
rosa_multiflora Rmu_sc0000236.1_g000047 Rmu_sc0000284.1_g000007 Rmu_sc0000288.1_g000006 Rmu_sc0000507.1_g000017 Rmu_sc0000580.1_g000015 Rmu_sc0000663.1_g000011 Rmu_sc0000675.1_g000024 Rmu_sc0000693.1_g000072 Rmu_sc0000779.1_g000005 Rmu_sc0000851.1_g000015 Rmu_sc0000962.1_g000001 Rmu_sc0001493.1_g000055 Rmu_sc0001669.1_g000025 Rmu_sc0001891.1_g000051 Rmu_sc0001926.1_g000007 Rmu_sc0002082.1_g000025 Rmu_sc0002141.1_g000001 Rmu_sc0002141.1_g000004 Rmu_sc0002414.1_g000012 Rmu_sc0002557.1_g000022 Rmu_sc0002709.1_g000038 Rmu_sc0002897.1_g000004 Rmu_sc0002934.1_g000055 Rmu_sc0003692.1_g000017 Rmu_sc0004283.1_g000068 Rmu_sc0004598.1_g000010 Rmu_sc0004614.1_g000004 Rmu_sc0004805.1_g000006 Rmu_sc0005142.1_g000041 Rmu_sc0005777.1_g000001 Rmu_sc0006420.1_g000019 Rmu_sc0006803.1_g000016 Rmu_sc0007034.1_g000015 Rmu_sc0008079.1_g000017 Rmu_sc0008148.1_g000040 Rmu_sc0008608.1_g000007 Rmu_sc0008675.1_g000001 Rmu_sc0009663.1_g000001 Rmu_sc0010188.1_g000003 Rmu_sc0010739.1_g000005 Rmu_sc0016265.1_g000001 Rmu_sc0031757.1_g000001 Rmu_ssc0000087.1_g000024 Rmu_ssc0000438.1_g000029
rosa_roxburghii Rroxscaffold_1G00003350
rosa_rugosa Rorug03G0248400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 188
AciI CCGC 3 cut(s) 68, 540, 549
AclI AACGTT 1 cut(s) 252
AclWI GGATC 3 cut(s) 274, 282, 295
AcsI RAATTY 1 cut(s) 242
AcvI CACGTG 1 cut(s) 341
AfaI GTAC 2 cut(s) 119, 397
AfiI CCNNNNNNNGG 2 cut(s) 263, 491
AflIII ACRYGT 1 cut(s) 340
AgeI ACCGGT 1 cut(s) 51
AgsI TTSAA 4 cut(s) 140, 238, 382, 467
AhlI ACTAGT 1 cut(s) 293
AjnI CCWGG 1 cut(s) 456
AluBI AGCT 1 cut(s) 574
AluI AGCT 1 cut(s) 574
Alw21I GWGCWC 1 cut(s) 576
AlwI GGATC 3 cut(s) 274, 282, 295
AoxI GGCC 2 cut(s) 5, 91
ApeKI GCWGC 1 cut(s) 35
ApoI RAATTY 1 cut(s) 242
AsiGI ACCGGT 1 cut(s) 51
Asp700I GAANNNNTTC 2 cut(s) 191, 471
AspS9I GGNCC 1 cut(s) 91
AsuC2I CCSGG 1 cut(s) 40
AsuHPI GGTGA 4 cut(s) 366, 446, 506, 563
BamHI GGATCC 1 cut(s) 287
BanII GRGCYC 2 cut(s) 61, 576
BauI CACGAG 1 cut(s) 219
BbrPI CACGTG 1 cut(s) 341
BbsI GAAGAC 2 cut(s) 184, 524
Bbv12I GWGCWC 1 cut(s) 576
BbvI GCAGC 1 cut(s) 47
BccI CCATC 1 cut(s) 302
BciT130I CCWGG 1 cut(s) 458
BcnI CCSGG 1 cut(s) 40
BcuI ACTAGT 1 cut(s) 293
BfaI CTAG 1 cut(s) 294
BglII AGATCT 2 cut(s) 144, 314
BisI GCNGC 2 cut(s) 36, 541
BlpI GCTNAGC 1 cut(s) 575
BlsI GCNGC 2 cut(s) 37, 542
BmcAI AGTACT 1 cut(s) 397
Bme1390I CCNGG 2 cut(s) 40, 458
BmgT120I GGNCC 1 cut(s) 91
BmiI GGNNCC 3 cut(s) 60, 203, 289
BmrFI CCNGG 2 cut(s) 40, 458
BmsI GCATC 2 cut(s) 36, 586
BpiI GAAGAC 2 cut(s) 184, 524
BpmI CTGGAG 1 cut(s) 111
Bpu1102I GCTNAGC 1 cut(s) 575
BpuEI CTTGAG 3 cut(s) 71, 197, 590
BpuMI CCSGG 1 cut(s) 40
BsaAI YACGTR 1 cut(s) 341
BsaJI CCNNGG 2 cut(s) 12, 528
BsaWI WCCGGW 2 cut(s) 51, 256
Bsc4I CCNNNNNNNGG 2 cut(s) 263, 491
Bse118I RCCGGY 1 cut(s) 51
Bse1I ACTGG 1 cut(s) 393
BseBI CCWGG 1 cut(s) 458
BseDI CCNNGG 2 cut(s) 12, 528
BseGI GGATG 1 cut(s) 27
BseLI CCNNNNNNNGG 2 cut(s) 263, 491
BseMII CTCAG 1 cut(s) 589
BseNI ACTGG 1 cut(s) 393
BseRI GAGGAG 4 cut(s) 29, 361, 459, 462
BseXI GCAGC 1 cut(s) 47
BshFI GGCC 2 cut(s) 7, 93
BshTI ACCGGT 1 cut(s) 51
BsiHKAI GWGCWC 1 cut(s) 576
BsiSI CCGG 3 cut(s) 39, 52, 257
BslI CCNNNNNNNGG 2 cut(s) 263, 491
BsnI GGCC 2 cut(s) 7, 93
Bsp1286I GDGCHC 2 cut(s) 61, 576
Bsp143I GATC 8 cut(s) 144, 174, 266, 274, 287, 314, 322, 451
Bsp1720I GCTNAGC 1 cut(s) 575
BspACI CCGC 3 cut(s) 68, 540, 549
BspANI GGCC 2 cut(s) 7, 93
BspCNI CTCAG 1 cut(s) 588
BspLI GGNNCC 3 cut(s) 60, 203, 289
BspPI GGATC 3 cut(s) 274, 282, 295
BsrFI RCCGGY 1 cut(s) 51
BsrI ACTGG 1 cut(s) 393
BssAI RCCGGY 1 cut(s) 51
BssECI CCNNGG 2 cut(s) 12, 528
BssMI GATC 8 cut(s) 144, 174, 266, 274, 287, 314, 322, 451
BssSI CACGAG 1 cut(s) 219
Bst2BI CACGAG 1 cut(s) 219
Bst2UI CCWGG 1 cut(s) 458
Bst4CI ACNGT 1 cut(s) 165
BstBAI YACGTR 1 cut(s) 341
BstDEI CTNAG 3 cut(s) 77, 575, 609
BstF5I GGATG 1 cut(s) 27
BstKTI GATC 8 cut(s) 147, 177, 269, 277, 290, 317, 325, 454
BstMBI GATC 8 cut(s) 144, 174, 266, 274, 287, 314, 322, 451
BstMWI GCNNNNNNNGC 2 cut(s) 546, 605
BstNI CCWGG 1 cut(s) 458
BstSCI CCNGG 2 cut(s) 38, 456
BstV1I GCAGC 1 cut(s) 47
BstV2I GAAGAC 2 cut(s) 184, 524
BstX2I RGATCY 4 cut(s) 144, 266, 287, 314
BstYI RGATCY 4 cut(s) 144, 266, 287, 314
BsuRI GGCC 2 cut(s) 7, 93
BtsCI GGATG 1 cut(s) 27
Cfr10I RCCGGY 1 cut(s) 51
Cfr13I GGNCC 1 cut(s) 91
Csp6I GTAC 2 cut(s) 118, 396
CspAI ACCGGT 1 cut(s) 51
CviAII CATG 5 cut(s) 433, 487, 491, 514, 604
CviQI GTAC 2 cut(s) 118, 396
DdeI CTNAG 3 cut(s) 77, 575, 609
DpnI GATC 8 cut(s) 146, 176, 268, 276, 289, 316, 324, 453
DpnII GATC 8 cut(s) 144, 174, 266, 274, 287, 314, 322, 451
DrdI GACNNNNNNGTC 1 cut(s) 188
DseDI GACNNNNNNGTC 1 cut(s) 188
Ecl136II GAGCTC 1 cut(s) 574
Eco147I AGGCCT 1 cut(s) 7
Eco24I GRGCYC 2 cut(s) 61, 576
Eco53kI GAGCTC 1 cut(s) 574
Eco72I CACGTG 1 cut(s) 341
EcoICRI GAGCTC 1 cut(s) 574
EcoO109I RGGNCCY 1 cut(s) 91
EcoRII CCWGG 1 cut(s) 456
EcoT22I ATGCAT 1 cut(s) 492
EcoT38I GRGCYC 2 cut(s) 61, 576
FaeI CATG 5 cut(s) 436, 490, 494, 517, 607
FalI AAGNNNNNCTT 2 cut(s) 176, 208
FatI CATG 5 cut(s) 432, 486, 490, 513, 603
Fnu4HI GCNGC 2 cut(s) 36, 541
FokI GGATG 1 cut(s) 14
FriOI GRGCYC 2 cut(s) 61, 576
Fsp4HI GCNGC 2 cut(s) 36, 541
FspBI CTAG 1 cut(s) 294
GluI GCNGC 2 cut(s) 36, 541
GsuI CTGGAG 1 cut(s) 111
HaeIII GGCC 2 cut(s) 7, 93
HapII CCGG 3 cut(s) 39, 52, 257
Hin1II CATG 5 cut(s) 436, 490, 494, 517, 607
HincII GTYRAC 1 cut(s) 358
HindII GTYRAC 1 cut(s) 358
HinfI GANTC 3 cut(s) 81, 136, 554
HpaII CCGG 3 cut(s) 39, 52, 257
HphI GGTGA 4 cut(s) 366, 446, 506, 563
Hpy166II GTNNAC 1 cut(s) 358
Hpy188I TCNGA 3 cut(s) 159, 249, 529
Hpy188III TCNNGA 5 cut(s) 128, 140, 205, 221, 272
Hpy8I GTNNAC 1 cut(s) 358
HpyAV CCTTC 4 cut(s) 161, 232, 388, 482
HpyCH4III ACNGT 1 cut(s) 165
HpyCH4IV ACGT 3 cut(s) 189, 252, 340
HpyCH4V TGCA 2 cut(s) 490, 599
HpyF10VI GCNNNNNNNGC 2 cut(s) 546, 605
HpyF3I CTNAG 3 cut(s) 77, 575, 609
HpySE526I ACGT 3 cut(s) 189, 252, 340
Hsp92II CATG 5 cut(s) 436, 490, 494, 517, 607
Kzo9I GATC 8 cut(s) 144, 174, 266, 274, 287, 314, 322, 451
LmnI GCTCC 1 cut(s) 64
LpnPI CCDG 9 cut(s) 52, 65, 141, 218, 270, 402, 406, 443, 470
Lsp1109I GCAGC 1 cut(s) 47
LweI GCATC 2 cut(s) 36, 586
MaeI CTAG 1 cut(s) 294
MaeII ACGT 3 cut(s) 189, 252, 340
MaeIII GTNAC 3 cut(s) 47, 336, 551
MalI GATC 8 cut(s) 146, 176, 268, 276, 289, 316, 324, 453
MboI GATC 8 cut(s) 144, 174, 266, 274, 287, 314, 322, 451
MboII GAAGA 2 cut(s) 184, 529
MflI RGATCY 4 cut(s) 144, 266, 287, 314
MhlI GDGCHC 2 cut(s) 61, 576
MluCI AATT 2 cut(s) 242, 280
MlyI GAGTC 1 cut(s) 548
Mph1103I ATGCAT 1 cut(s) 492
MroXI GAANNNNTTC 2 cut(s) 191, 471
MseI TTAA 1 cut(s) 114
MspI CCGG 3 cut(s) 39, 52, 257
MspR9I CCNGG 2 cut(s) 40, 458
MvaI CCWGG 1 cut(s) 458
MwoI GCNNNNNNNGC 2 cut(s) 546, 605
NciI CCSGG 1 cut(s) 40
NdeII GATC 8 cut(s) 144, 174, 266, 274, 287, 314, 322, 451
NlaIII CATG 5 cut(s) 436, 490, 494, 517, 607
NlaIV GGNNCC 3 cut(s) 60, 203, 289
NmuCI GTSAC 2 cut(s) 336, 551
NsiI ATGCAT 1 cut(s) 492
PceI AGGCCT 1 cut(s) 7
PdmI GAANNNNTTC 2 cut(s) 191, 471
PfeI GAWTC 2 cut(s) 81, 136
PinAI ACCGGT 1 cut(s) 51
PkrI GCNGC 2 cut(s) 37, 542
PleI GAGTC 1 cut(s) 548
PmaCI CACGTG 1 cut(s) 341
PmlI CACGTG 1 cut(s) 341
PpsI GAGTC 1 cut(s) 548
Ppu21I YACGTR 1 cut(s) 341
Psp124BI GAGCTC 1 cut(s) 576
Psp1406I AACGTT 1 cut(s) 252
Psp6I CCWGG 1 cut(s) 456
PspCI CACGTG 1 cut(s) 341
PspGI CCWGG 1 cut(s) 456
PspN4I GGNNCC 3 cut(s) 60, 203, 289
PspPI GGNCC 1 cut(s) 91
PsuI RGATCY 4 cut(s) 144, 266, 287, 314
RsaI GTAC 2 cut(s) 119, 397
RsaNI GTAC 2 cut(s) 118, 396
SacI GAGCTC 1 cut(s) 576
SaqAI TTAA 1 cut(s) 114
SatI GCNGC 2 cut(s) 36, 541
Sau3AI GATC 8 cut(s) 144, 174, 266, 274, 287, 314, 322, 451
Sau96I GGNCC 1 cut(s) 91
ScaI AGTACT 1 cut(s) 397
SchI GAGTC 1 cut(s) 548
ScrFI CCNGG 2 cut(s) 40, 458
SduI GDGCHC 2 cut(s) 61, 576
SetI ASST 7 cut(s) 192, 213, 255, 343, 404, 538, 576
SfaNI GCATC 2 cut(s) 36, 586
SmlI CTYRAG 3 cut(s) 86, 212, 569
SmoI CTYRAG 3 cut(s) 86, 212, 569
SpeI ACTAGT 1 cut(s) 293
Sse9I AATT 2 cut(s) 242, 280
SseBI AGGCCT 1 cut(s) 7
SsiI CCGC 3 cut(s) 68, 540, 549
SspMI CTAG 1 cut(s) 294
SstI GAGCTC 1 cut(s) 576
StuI AGGCCT 1 cut(s) 7
StyD4I CCNGG 2 cut(s) 38, 456
TaaI ACNGT 1 cut(s) 165
TaiI ACGT 3 cut(s) 192, 255, 343
TaqI TCGA 2 cut(s) 177, 273
TasI AATT 2 cut(s) 242, 280
TatI WGTACW 1 cut(s) 395
TauI GCSGC 1 cut(s) 543
TfiI GAWTC 2 cut(s) 81, 136
Tru1I TTAA 1 cut(s) 114
Tru9I TTAA 1 cut(s) 114
TseFI GTSAC 2 cut(s) 336, 551
TseI GCWGC 1 cut(s) 35
Tsp45I GTSAC 2 cut(s) 336, 551
TspDTI ATGAA 3 cut(s) 143, 421, 530
XapI RAATTY 1 cut(s) 242
XmnI GAANNNNTTC 2 cut(s) 191, 471
XspI CTAG 1 cut(s) 294
ZrmI AGTACT 1 cut(s) 397
Zsp2I ATGCAT 1 cut(s) 492
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.