Homeodomain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Homeodomain | PF00046 | 17 - 77 | 1.2e-10 | Homeodomain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 188 |
| AciI | CCGC | 3 cut(s) | 68, 540, 549 |
| AclI | AACGTT | 1 cut(s) | 252 |
| AclWI | GGATC | 3 cut(s) | 274, 282, 295 |
| AcsI | RAATTY | 1 cut(s) | 242 |
| AcvI | CACGTG | 1 cut(s) | 341 |
| AfaI | GTAC | 2 cut(s) | 119, 397 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 263, 491 |
| AflIII | ACRYGT | 1 cut(s) | 340 |
| AgeI | ACCGGT | 1 cut(s) | 51 |
| AgsI | TTSAA | 4 cut(s) | 140, 238, 382, 467 |
| AhlI | ACTAGT | 1 cut(s) | 293 |
| AjnI | CCWGG | 1 cut(s) | 456 |
| AluBI | AGCT | 1 cut(s) | 574 |
| AluI | AGCT | 1 cut(s) | 574 |
| Alw21I | GWGCWC | 1 cut(s) | 576 |
| AlwI | GGATC | 3 cut(s) | 274, 282, 295 |
| AoxI | GGCC | 2 cut(s) | 5, 91 |
| ApeKI | GCWGC | 1 cut(s) | 35 |
| ApoI | RAATTY | 1 cut(s) | 242 |
| AsiGI | ACCGGT | 1 cut(s) | 51 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 191, 471 |
| AspS9I | GGNCC | 1 cut(s) | 91 |
| AsuC2I | CCSGG | 1 cut(s) | 40 |
| AsuHPI | GGTGA | 4 cut(s) | 366, 446, 506, 563 |
| BamHI | GGATCC | 1 cut(s) | 287 |
| BanII | GRGCYC | 2 cut(s) | 61, 576 |
| BauI | CACGAG | 1 cut(s) | 219 |
| BbrPI | CACGTG | 1 cut(s) | 341 |
| BbsI | GAAGAC | 2 cut(s) | 184, 524 |
| Bbv12I | GWGCWC | 1 cut(s) | 576 |
| BbvI | GCAGC | 1 cut(s) | 47 |
| BccI | CCATC | 1 cut(s) | 302 |
| BciT130I | CCWGG | 1 cut(s) | 458 |
| BcnI | CCSGG | 1 cut(s) | 40 |
| BcuI | ACTAGT | 1 cut(s) | 293 |
| BfaI | CTAG | 1 cut(s) | 294 |
| BglII | AGATCT | 2 cut(s) | 144, 314 |
| BisI | GCNGC | 2 cut(s) | 36, 541 |
| BlpI | GCTNAGC | 1 cut(s) | 575 |
| BlsI | GCNGC | 2 cut(s) | 37, 542 |
| BmcAI | AGTACT | 1 cut(s) | 397 |
| Bme1390I | CCNGG | 2 cut(s) | 40, 458 |
| BmgT120I | GGNCC | 1 cut(s) | 91 |
| BmiI | GGNNCC | 3 cut(s) | 60, 203, 289 |
| BmrFI | CCNGG | 2 cut(s) | 40, 458 |
| BmsI | GCATC | 2 cut(s) | 36, 586 |
| BpiI | GAAGAC | 2 cut(s) | 184, 524 |
| BpmI | CTGGAG | 1 cut(s) | 111 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 575 |
| BpuEI | CTTGAG | 3 cut(s) | 71, 197, 590 |
| BpuMI | CCSGG | 1 cut(s) | 40 |
| BsaAI | YACGTR | 1 cut(s) | 341 |
| BsaJI | CCNNGG | 2 cut(s) | 12, 528 |
| BsaWI | WCCGGW | 2 cut(s) | 51, 256 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 263, 491 |
| Bse118I | RCCGGY | 1 cut(s) | 51 |
| Bse1I | ACTGG | 1 cut(s) | 393 |
| BseBI | CCWGG | 1 cut(s) | 458 |
| BseDI | CCNNGG | 2 cut(s) | 12, 528 |
| BseGI | GGATG | 1 cut(s) | 27 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 263, 491 |
| BseMII | CTCAG | 1 cut(s) | 589 |
| BseNI | ACTGG | 1 cut(s) | 393 |
| BseRI | GAGGAG | 4 cut(s) | 29, 361, 459, 462 |
| BseXI | GCAGC | 1 cut(s) | 47 |
| BshFI | GGCC | 2 cut(s) | 7, 93 |
| BshTI | ACCGGT | 1 cut(s) | 51 |
| BsiHKAI | GWGCWC | 1 cut(s) | 576 |
| BsiSI | CCGG | 3 cut(s) | 39, 52, 257 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 263, 491 |
| BsnI | GGCC | 2 cut(s) | 7, 93 |
| Bsp1286I | GDGCHC | 2 cut(s) | 61, 576 |
| Bsp143I | GATC | 8 cut(s) | 144, 174, 266, 274, 287, 314, 322, 451 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 575 |
| BspACI | CCGC | 3 cut(s) | 68, 540, 549 |
| BspANI | GGCC | 2 cut(s) | 7, 93 |
| BspCNI | CTCAG | 1 cut(s) | 588 |
| BspLI | GGNNCC | 3 cut(s) | 60, 203, 289 |
| BspPI | GGATC | 3 cut(s) | 274, 282, 295 |
| BsrFI | RCCGGY | 1 cut(s) | 51 |
| BsrI | ACTGG | 1 cut(s) | 393 |
| BssAI | RCCGGY | 1 cut(s) | 51 |
| BssECI | CCNNGG | 2 cut(s) | 12, 528 |
| BssMI | GATC | 8 cut(s) | 144, 174, 266, 274, 287, 314, 322, 451 |
| BssSI | CACGAG | 1 cut(s) | 219 |
| Bst2BI | CACGAG | 1 cut(s) | 219 |
| Bst2UI | CCWGG | 1 cut(s) | 458 |
| Bst4CI | ACNGT | 1 cut(s) | 165 |
| BstBAI | YACGTR | 1 cut(s) | 341 |
| BstDEI | CTNAG | 3 cut(s) | 77, 575, 609 |
| BstF5I | GGATG | 1 cut(s) | 27 |
| BstKTI | GATC | 8 cut(s) | 147, 177, 269, 277, 290, 317, 325, 454 |
| BstMBI | GATC | 8 cut(s) | 144, 174, 266, 274, 287, 314, 322, 451 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 546, 605 |
| BstNI | CCWGG | 1 cut(s) | 458 |
| BstSCI | CCNGG | 2 cut(s) | 38, 456 |
| BstV1I | GCAGC | 1 cut(s) | 47 |
| BstV2I | GAAGAC | 2 cut(s) | 184, 524 |
| BstX2I | RGATCY | 4 cut(s) | 144, 266, 287, 314 |
| BstYI | RGATCY | 4 cut(s) | 144, 266, 287, 314 |
| BsuRI | GGCC | 2 cut(s) | 7, 93 |
| BtsCI | GGATG | 1 cut(s) | 27 |
| Cfr10I | RCCGGY | 1 cut(s) | 51 |
| Cfr13I | GGNCC | 1 cut(s) | 91 |
| Csp6I | GTAC | 2 cut(s) | 118, 396 |
| CspAI | ACCGGT | 1 cut(s) | 51 |
| CviAII | CATG | 5 cut(s) | 433, 487, 491, 514, 604 |
| CviQI | GTAC | 2 cut(s) | 118, 396 |
| DdeI | CTNAG | 3 cut(s) | 77, 575, 609 |
| DpnI | GATC | 8 cut(s) | 146, 176, 268, 276, 289, 316, 324, 453 |
| DpnII | GATC | 8 cut(s) | 144, 174, 266, 274, 287, 314, 322, 451 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 188 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 188 |
| Ecl136II | GAGCTC | 1 cut(s) | 574 |
| Eco147I | AGGCCT | 1 cut(s) | 7 |
| Eco24I | GRGCYC | 2 cut(s) | 61, 576 |
| Eco53kI | GAGCTC | 1 cut(s) | 574 |
| Eco72I | CACGTG | 1 cut(s) | 341 |
| EcoICRI | GAGCTC | 1 cut(s) | 574 |
| EcoO109I | RGGNCCY | 1 cut(s) | 91 |
| EcoRII | CCWGG | 1 cut(s) | 456 |
| EcoT22I | ATGCAT | 1 cut(s) | 492 |
| EcoT38I | GRGCYC | 2 cut(s) | 61, 576 |
| FaeI | CATG | 5 cut(s) | 436, 490, 494, 517, 607 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 176, 208 |
| FatI | CATG | 5 cut(s) | 432, 486, 490, 513, 603 |
| Fnu4HI | GCNGC | 2 cut(s) | 36, 541 |
| FokI | GGATG | 1 cut(s) | 14 |
| FriOI | GRGCYC | 2 cut(s) | 61, 576 |
| Fsp4HI | GCNGC | 2 cut(s) | 36, 541 |
| FspBI | CTAG | 1 cut(s) | 294 |
| GluI | GCNGC | 2 cut(s) | 36, 541 |
| GsuI | CTGGAG | 1 cut(s) | 111 |
| HaeIII | GGCC | 2 cut(s) | 7, 93 |
| HapII | CCGG | 3 cut(s) | 39, 52, 257 |
| Hin1II | CATG | 5 cut(s) | 436, 490, 494, 517, 607 |
| HincII | GTYRAC | 1 cut(s) | 358 |
| HindII | GTYRAC | 1 cut(s) | 358 |
| HinfI | GANTC | 3 cut(s) | 81, 136, 554 |
| HpaII | CCGG | 3 cut(s) | 39, 52, 257 |
| HphI | GGTGA | 4 cut(s) | 366, 446, 506, 563 |
| Hpy166II | GTNNAC | 1 cut(s) | 358 |
| Hpy188I | TCNGA | 3 cut(s) | 159, 249, 529 |
| Hpy188III | TCNNGA | 5 cut(s) | 128, 140, 205, 221, 272 |
| Hpy8I | GTNNAC | 1 cut(s) | 358 |
| HpyAV | CCTTC | 4 cut(s) | 161, 232, 388, 482 |
| HpyCH4III | ACNGT | 1 cut(s) | 165 |
| HpyCH4IV | ACGT | 3 cut(s) | 189, 252, 340 |
| HpyCH4V | TGCA | 2 cut(s) | 490, 599 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 546, 605 |
| HpyF3I | CTNAG | 3 cut(s) | 77, 575, 609 |
| HpySE526I | ACGT | 3 cut(s) | 189, 252, 340 |
| Hsp92II | CATG | 5 cut(s) | 436, 490, 494, 517, 607 |
| Kzo9I | GATC | 8 cut(s) | 144, 174, 266, 274, 287, 314, 322, 451 |
| LmnI | GCTCC | 1 cut(s) | 64 |
| LpnPI | CCDG | 9 cut(s) | 52, 65, 141, 218, 270, 402, 406, 443, 470 |
| Lsp1109I | GCAGC | 1 cut(s) | 47 |
| LweI | GCATC | 2 cut(s) | 36, 586 |
| MaeI | CTAG | 1 cut(s) | 294 |
| MaeII | ACGT | 3 cut(s) | 189, 252, 340 |
| MaeIII | GTNAC | 3 cut(s) | 47, 336, 551 |
| MalI | GATC | 8 cut(s) | 146, 176, 268, 276, 289, 316, 324, 453 |
| MboI | GATC | 8 cut(s) | 144, 174, 266, 274, 287, 314, 322, 451 |
| MboII | GAAGA | 2 cut(s) | 184, 529 |
| MflI | RGATCY | 4 cut(s) | 144, 266, 287, 314 |
| MhlI | GDGCHC | 2 cut(s) | 61, 576 |
| MluCI | AATT | 2 cut(s) | 242, 280 |
| MlyI | GAGTC | 1 cut(s) | 548 |
| Mph1103I | ATGCAT | 1 cut(s) | 492 |
| MroXI | GAANNNNTTC | 2 cut(s) | 191, 471 |
| MseI | TTAA | 1 cut(s) | 114 |
| MspI | CCGG | 3 cut(s) | 39, 52, 257 |
| MspR9I | CCNGG | 2 cut(s) | 40, 458 |
| MvaI | CCWGG | 1 cut(s) | 458 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 546, 605 |
| NciI | CCSGG | 1 cut(s) | 40 |
| NdeII | GATC | 8 cut(s) | 144, 174, 266, 274, 287, 314, 322, 451 |
| NlaIII | CATG | 5 cut(s) | 436, 490, 494, 517, 607 |
| NlaIV | GGNNCC | 3 cut(s) | 60, 203, 289 |
| NmuCI | GTSAC | 2 cut(s) | 336, 551 |
| NsiI | ATGCAT | 1 cut(s) | 492 |
| PceI | AGGCCT | 1 cut(s) | 7 |
| PdmI | GAANNNNTTC | 2 cut(s) | 191, 471 |
| PfeI | GAWTC | 2 cut(s) | 81, 136 |
| PinAI | ACCGGT | 1 cut(s) | 51 |
| PkrI | GCNGC | 2 cut(s) | 37, 542 |
| PleI | GAGTC | 1 cut(s) | 548 |
| PmaCI | CACGTG | 1 cut(s) | 341 |
| PmlI | CACGTG | 1 cut(s) | 341 |
| PpsI | GAGTC | 1 cut(s) | 548 |
| Ppu21I | YACGTR | 1 cut(s) | 341 |
| Psp124BI | GAGCTC | 1 cut(s) | 576 |
| Psp1406I | AACGTT | 1 cut(s) | 252 |
| Psp6I | CCWGG | 1 cut(s) | 456 |
| PspCI | CACGTG | 1 cut(s) | 341 |
| PspGI | CCWGG | 1 cut(s) | 456 |
| PspN4I | GGNNCC | 3 cut(s) | 60, 203, 289 |
| PspPI | GGNCC | 1 cut(s) | 91 |
| PsuI | RGATCY | 4 cut(s) | 144, 266, 287, 314 |
| RsaI | GTAC | 2 cut(s) | 119, 397 |
| RsaNI | GTAC | 2 cut(s) | 118, 396 |
| SacI | GAGCTC | 1 cut(s) | 576 |
| SaqAI | TTAA | 1 cut(s) | 114 |
| SatI | GCNGC | 2 cut(s) | 36, 541 |
| Sau3AI | GATC | 8 cut(s) | 144, 174, 266, 274, 287, 314, 322, 451 |
| Sau96I | GGNCC | 1 cut(s) | 91 |
| ScaI | AGTACT | 1 cut(s) | 397 |
| SchI | GAGTC | 1 cut(s) | 548 |
| ScrFI | CCNGG | 2 cut(s) | 40, 458 |
| SduI | GDGCHC | 2 cut(s) | 61, 576 |
| SetI | ASST | 7 cut(s) | 192, 213, 255, 343, 404, 538, 576 |
| SfaNI | GCATC | 2 cut(s) | 36, 586 |
| SmlI | CTYRAG | 3 cut(s) | 86, 212, 569 |
| SmoI | CTYRAG | 3 cut(s) | 86, 212, 569 |
| SpeI | ACTAGT | 1 cut(s) | 293 |
| Sse9I | AATT | 2 cut(s) | 242, 280 |
| SseBI | AGGCCT | 1 cut(s) | 7 |
| SsiI | CCGC | 3 cut(s) | 68, 540, 549 |
| SspMI | CTAG | 1 cut(s) | 294 |
| SstI | GAGCTC | 1 cut(s) | 576 |
| StuI | AGGCCT | 1 cut(s) | 7 |
| StyD4I | CCNGG | 2 cut(s) | 38, 456 |
| TaaI | ACNGT | 1 cut(s) | 165 |
| TaiI | ACGT | 3 cut(s) | 192, 255, 343 |
| TaqI | TCGA | 2 cut(s) | 177, 273 |
| TasI | AATT | 2 cut(s) | 242, 280 |
| TatI | WGTACW | 1 cut(s) | 395 |
| TauI | GCSGC | 1 cut(s) | 543 |
| TfiI | GAWTC | 2 cut(s) | 81, 136 |
| Tru1I | TTAA | 1 cut(s) | 114 |
| Tru9I | TTAA | 1 cut(s) | 114 |
| TseFI | GTSAC | 2 cut(s) | 336, 551 |
| TseI | GCWGC | 1 cut(s) | 35 |
| Tsp45I | GTSAC | 2 cut(s) | 336, 551 |
| TspDTI | ATGAA | 3 cut(s) | 143, 421, 530 |
| XapI | RAATTY | 1 cut(s) | 242 |
| XmnI | GAANNNNTTC | 2 cut(s) | 191, 471 |
| XspI | CTAG | 1 cut(s) | 294 |
| ZrmI | AGTACT | 1 cut(s) | 397 |
| Zsp2I | ATGCAT | 1 cut(s) | 492 |