Homeodomain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 650 |
| AciI | CCGC | 2 cut(s) | 564, 600 |
| AclI | AACGTT | 2 cut(s) | 255, 318 |
| AclWI | GGATC | 6 cut(s) | 218, 327, 340, 348, 361, 375 |
| AcsI | RAATTY | 2 cut(s) | 147, 347 |
| AcuI | CTGAAG | 2 cut(s) | 245, 390 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 117, 521 |
| AgeI | ACCGGT | 1 cut(s) | 117 |
| AgsI | TTSAA | 2 cut(s) | 11, 304 |
| AjnI | CCWGG | 2 cut(s) | 153, 486 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 519, 551 |
| AluBI | AGCT | 7 cut(s) | 7, 137, 160, 570, 634, 656, 668 |
| AluI | AGCT | 7 cut(s) | 7, 137, 160, 570, 634, 656, 668 |
| Alw21I | GWGCWC | 2 cut(s) | 522, 636 |
| Alw26I | GTCTC | 2 cut(s) | 221, 491 |
| AlwI | GGATC | 6 cut(s) | 218, 327, 340, 348, 361, 375 |
| Aor13HI | TCCGGA | 1 cut(s) | 650 |
| AoxI | GGCC | 1 cut(s) | 104 |
| ApeKI | GCWGC | 1 cut(s) | 74 |
| ApoI | RAATTY | 2 cut(s) | 147, 347 |
| AsiGI | ACCGGT | 1 cut(s) | 117 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 257 |
| AsuC2I | CCSGG | 1 cut(s) | 79 |
| AsuHPI | GGTGA | 4 cut(s) | 431, 476, 536, 609 |
| BamHI | GGATCC | 2 cut(s) | 332, 353 |
| BanII | GRGCYC | 1 cut(s) | 636 |
| BauI | CACGAG | 1 cut(s) | 285 |
| BbsI | GAAGAC | 1 cut(s) | 554 |
| Bbv12I | GWGCWC | 2 cut(s) | 522, 636 |
| BbvI | GCAGC | 1 cut(s) | 86 |
| BccI | CCATC | 2 cut(s) | 228, 392 |
| BceAI | ACGGC | 1 cut(s) | 214 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 367, 401 |
| BciT130I | CCWGG | 2 cut(s) | 155, 488 |
| BcnI | CCSGG | 1 cut(s) | 79 |
| BcoDI | GTCTC | 2 cut(s) | 221, 491 |
| BfaI | CTAG | 1 cut(s) | 665 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 103, 235 |
| BisI | GCNGC | 1 cut(s) | 75 |
| BlpI | GCTNAGC | 1 cut(s) | 635 |
| BlsI | GCNGC | 1 cut(s) | 76 |
| Bme1390I | CCNGG | 3 cut(s) | 79, 155, 488 |
| BmiI | GGNNCC | 4 cut(s) | 269, 334, 355, 403 |
| BmrFI | CCNGG | 3 cut(s) | 79, 155, 488 |
| BpiI | GAAGAC | 1 cut(s) | 554 |
| BpmI | CTGGAG | 1 cut(s) | 137 |
| Bpu10I | CCTNAGC | 1 cut(s) | 516 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 635 |
| BpuEI | CTTGAG | 2 cut(s) | 263, 650 |
| BpuMI | CCSGG | 1 cut(s) | 79 |
| Bsa29I | ATCGAT | 3 cut(s) | 387, 431, 435 |
| BsaJI | CCNNGG | 4 cut(s) | 51, 445, 535, 558 |
| BsaWI | WCCGGW | 3 cut(s) | 117, 587, 650 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 117, 521 |
| Bse118I | RCCGGY | 1 cut(s) | 117 |
| Bse1I | ACTGG | 1 cut(s) | 421 |
| BseAI | TCCGGA | 1 cut(s) | 650 |
| BseBI | CCWGG | 2 cut(s) | 155, 488 |
| BseCI | ATCGAT | 3 cut(s) | 387, 431, 435 |
| BseDI | CCNNGG | 4 cut(s) | 51, 445, 535, 558 |
| BseGI | GGATG | 3 cut(s) | 531, 554, 647 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 117, 521 |
| BseMII | CTCAG | 3 cut(s) | 134, 507, 649 |
| BseNI | ACTGG | 1 cut(s) | 421 |
| BseRI | GAGGAG | 3 cut(s) | 68, 489, 492 |
| BseXI | GCAGC | 1 cut(s) | 86 |
| BseYI | CCCAGC | 1 cut(s) | 15 |
| Bsh1285I | CGRYCG | 1 cut(s) | 435 |
| BshFI | GGCC | 1 cut(s) | 106 |
| BshTI | ACCGGT | 1 cut(s) | 117 |
| BshVI | ATCGAT | 3 cut(s) | 387, 431, 435 |
| BsiEI | CGRYCG | 1 cut(s) | 435 |
| BsiHKAI | GWGCWC | 2 cut(s) | 522, 636 |
| BsiSI | CCGG | 4 cut(s) | 78, 118, 588, 651 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 117, 521 |
| BsmAI | GTCTC | 2 cut(s) | 221, 491 |
| BsnI | GGCC | 1 cut(s) | 106 |
| Bsp1286I | GDGCHC | 2 cut(s) | 522, 636 |
| Bsp13I | TCCGGA | 1 cut(s) | 650 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 635 |
| BspACI | CCGC | 2 cut(s) | 564, 600 |
| BspANI | GGCC | 1 cut(s) | 106 |
| BspCNI | CTCAG | 3 cut(s) | 135, 508, 648 |
| BspDI | ATCGAT | 3 cut(s) | 387, 431, 435 |
| BspEI | TCCGGA | 1 cut(s) | 650 |
| BspLI | GGNNCC | 4 cut(s) | 269, 334, 355, 403 |
| BspPI | GGATC | 6 cut(s) | 218, 327, 340, 348, 361, 375 |
| BsrFI | RCCGGY | 1 cut(s) | 117 |
| BsrI | ACTGG | 1 cut(s) | 421 |
| BssAI | RCCGGY | 1 cut(s) | 117 |
| BssECI | CCNNGG | 4 cut(s) | 51, 445, 535, 558 |
| BssSI | CACGAG | 1 cut(s) | 285 |
| BssT1I | CCWWGG | 2 cut(s) | 445, 535 |
| Bst2BI | CACGAG | 1 cut(s) | 285 |
| Bst2UI | CCWGG | 2 cut(s) | 155, 488 |
| Bst4CI | ACNGT | 2 cut(s) | 524, 611 |
| Bst6I | CTCTTC | 1 cut(s) | 507 |
| BstDEI | CTNAG | 4 cut(s) | 143, 516, 635, 669 |
| BstEII | GGTNACC | 1 cut(s) | 539 |
| BstF5I | GGATG | 3 cut(s) | 531, 554, 647 |
| BstMAI | GTCTC | 2 cut(s) | 221, 491 |
| BstMCI | CGRYCG | 1 cut(s) | 435 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 103, 235 |
| BstNI | CCWGG | 2 cut(s) | 155, 488 |
| BstPI | GGTNACC | 1 cut(s) | 539 |
| BstSCI | CCNGG | 3 cut(s) | 77, 153, 486 |
| BstV1I | GCAGC | 1 cut(s) | 86 |
| BstV2I | GAAGAC | 1 cut(s) | 554 |
| BstX2I | RGATCY | 4 cut(s) | 210, 332, 353, 380 |
| BstYI | RGATCY | 4 cut(s) | 210, 332, 353, 380 |
| Bsu15I | ATCGAT | 3 cut(s) | 387, 431, 435 |
| BsuRI | GGCC | 1 cut(s) | 106 |
| BsuTUI | ATCGAT | 3 cut(s) | 387, 431, 435 |
| BtsCI | GGATG | 3 cut(s) | 531, 554, 647 |
| BtsIMutI | CAGTG | 2 cut(s) | 414, 616 |
| Cfr10I | RCCGGY | 1 cut(s) | 117 |
| ClaI | ATCGAT | 3 cut(s) | 387, 431, 435 |
| CspAI | ACCGGT | 1 cut(s) | 117 |
| CviAII | CATG | 3 cut(s) | 25, 463, 597 |
| DdeI | CTNAG | 4 cut(s) | 143, 516, 635, 669 |
| Eam1104I | CTCTTC | 1 cut(s) | 507 |
| EarI | CTCTTC | 1 cut(s) | 507 |
| Ecl136II | GAGCTC | 1 cut(s) | 634 |
| Eco130I | CCWWGG | 2 cut(s) | 445, 535 |
| Eco24I | GRGCYC | 1 cut(s) | 636 |
| Eco53kI | GAGCTC | 1 cut(s) | 634 |
| Eco57I | CTGAAG | 2 cut(s) | 245, 390 |
| Eco91I | GGTNACC | 1 cut(s) | 539 |
| EcoICRI | GAGCTC | 1 cut(s) | 634 |
| EcoO65I | GGTNACC | 1 cut(s) | 539 |
| EcoRI | GAATTC | 1 cut(s) | 147 |
| EcoRII | CCWGG | 2 cut(s) | 153, 486 |
| EcoT14I | CCWWGG | 2 cut(s) | 445, 535 |
| EcoT38I | GRGCYC | 1 cut(s) | 636 |
| ErhI | CCWWGG | 2 cut(s) | 445, 535 |
| FaeI | CATG | 3 cut(s) | 28, 466, 600 |
| FaiI | YATR | 4 cut(s) | 26, 234, 464, 598 |
| FatI | CATG | 3 cut(s) | 24, 462, 596 |
| Fnu4HI | GCNGC | 1 cut(s) | 75 |
| FokI | GGATG | 3 cut(s) | 518, 541, 634 |
| FriOI | GRGCYC | 1 cut(s) | 636 |
| Fsp4HI | GCNGC | 1 cut(s) | 75 |
| FspBI | CTAG | 1 cut(s) | 665 |
| GluI | GCNGC | 1 cut(s) | 75 |
| GsaI | CCCAGC | 1 cut(s) | 19 |
| GsuI | CTGGAG | 1 cut(s) | 137 |
| HaeIII | GGCC | 1 cut(s) | 106 |
| HapII | CCGG | 4 cut(s) | 78, 118, 588, 651 |
| Hin1II | CATG | 3 cut(s) | 28, 466, 600 |
| HinfI | GANTC | 6 cut(s) | 124, 202, 292, 410, 428, 499 |
| HpaII | CCGG | 4 cut(s) | 78, 118, 588, 651 |
| HphI | GGTGA | 4 cut(s) | 431, 476, 536, 609 |
| Hpy166II | GTNNAC | 1 cut(s) | 123 |
| Hpy188I | TCNGA | 3 cut(s) | 225, 297, 559 |
| Hpy188III | TCNNGA | 7 cut(s) | 244, 271, 287, 313, 496, 629, 651 |
| Hpy8I | GTNNAC | 1 cut(s) | 123 |
| Hpy99I | CGWCG | 1 cut(s) | 474 |
| HpyAV | CCTTC | 2 cut(s) | 298, 365 |
| HpyCH4III | ACNGT | 2 cut(s) | 524, 611 |
| HpyCH4IV | ACGT | 2 cut(s) | 255, 318 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 103, 235 |
| HpyF3I | CTNAG | 4 cut(s) | 143, 516, 635, 669 |
| HpySE526I | ACGT | 2 cut(s) | 255, 318 |
| Hsp92II | CATG | 3 cut(s) | 28, 466, 600 |
| Kpn2I | TCCGGA | 1 cut(s) | 650 |
| LmnI | GCTCC | 3 cut(s) | 4, 157, 653 |
| Lsp1109I | GCAGC | 1 cut(s) | 86 |
| MaeI | CTAG | 1 cut(s) | 665 |
| MaeII | ACGT | 2 cut(s) | 255, 318 |
| MaeIII | GTNAC | 4 cut(s) | 450, 539, 578, 602 |
| MboII | GAAGA | 2 cut(s) | 494, 559 |
| MflI | RGATCY | 4 cut(s) | 210, 332, 353, 380 |
| MhlI | GDGCHC | 2 cut(s) | 522, 636 |
| MluCI | AATT | 2 cut(s) | 147, 347 |
| MlyI | GAGTC | 3 cut(s) | 118, 301, 493 |
| MroI | TCCGGA | 1 cut(s) | 650 |
| MroXI | GAANNNNTTC | 1 cut(s) | 257 |
| MseI | TTAA | 1 cut(s) | 180 |
| MspI | CCGG | 4 cut(s) | 78, 118, 588, 651 |
| MspR9I | CCNGG | 3 cut(s) | 79, 155, 488 |
| MvaI | CCWGG | 2 cut(s) | 155, 488 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 103, 235 |
| NciI | CCSGG | 1 cut(s) | 79 |
| NlaIII | CATG | 3 cut(s) | 28, 466, 600 |
| NlaIV | GGNNCC | 4 cut(s) | 269, 334, 355, 403 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 405 |
| PdmI | GAANNNNTTC | 1 cut(s) | 257 |
| PfeI | GAWTC | 3 cut(s) | 202, 410, 428 |
| PfoI | TCCNGGA | 1 cut(s) | 153 |
| PinAI | ACCGGT | 1 cut(s) | 117 |
| PkrI | GCNGC | 1 cut(s) | 76 |
| Ple19I | CGATCG | 1 cut(s) | 435 |
| PleI | GAGTC | 3 cut(s) | 118, 300, 493 |
| PpsI | GAGTC | 3 cut(s) | 118, 300, 493 |
| Psp124BI | GAGCTC | 1 cut(s) | 636 |
| Psp1406I | AACGTT | 2 cut(s) | 255, 318 |
| Psp6I | CCWGG | 2 cut(s) | 153, 486 |
| PspEI | GGTNACC | 1 cut(s) | 539 |
| PspFI | CCCAGC | 1 cut(s) | 15 |
| PspGI | CCWGG | 2 cut(s) | 153, 486 |
| PspN4I | GGNNCC | 4 cut(s) | 269, 334, 355, 403 |
| PsuI | RGATCY | 4 cut(s) | 210, 332, 353, 380 |
| PvuI | CGATCG | 1 cut(s) | 435 |
| SacI | GAGCTC | 1 cut(s) | 636 |
| SaqAI | TTAA | 1 cut(s) | 180 |
| SatI | GCNGC | 1 cut(s) | 75 |
| SchI | GAGTC | 3 cut(s) | 118, 301, 493 |
| ScrFI | CCNGG | 3 cut(s) | 79, 155, 488 |
| SduI | GDGCHC | 2 cut(s) | 522, 636 |
| SmlI | CTYRAG | 2 cut(s) | 278, 629 |
| SmoI | CTYRAG | 2 cut(s) | 278, 629 |
| Sse9I | AATT | 2 cut(s) | 147, 347 |
| SsiI | CCGC | 2 cut(s) | 564, 600 |
| SspMI | CTAG | 1 cut(s) | 665 |
| SstI | GAGCTC | 1 cut(s) | 636 |
| StyD4I | CCNGG | 3 cut(s) | 77, 153, 486 |
| StyI | CCWWGG | 2 cut(s) | 445, 535 |
| TaaI | ACNGT | 2 cut(s) | 524, 611 |
| TaiI | ACGT | 2 cut(s) | 258, 321 |
| TaqI | TCGA | 5 cut(s) | 243, 387, 431, 435, 495 |
| TasI | AATT | 2 cut(s) | 147, 347 |
| TfiI | GAWTC | 3 cut(s) | 202, 410, 428 |
| Tru1I | TTAA | 1 cut(s) | 180 |
| Tru9I | TTAA | 1 cut(s) | 180 |
| TscAI | CASTG | 2 cut(s) | 421, 616 |
| TseI | GCWGC | 1 cut(s) | 74 |
| TspDTI | ATGAA | 2 cut(s) | 441, 451 |
| TspRI | CASTG | 2 cut(s) | 421, 616 |
| XapI | RAATTY | 2 cut(s) | 147, 347 |
| XmnI | GAANNNNTTC | 1 cut(s) | 257 |
| XspI | CTAG | 1 cut(s) | 665 |