Rmu_sc0001926.1_g000007

Homeodomain

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001926.1
Physical Location & Seq
Forward (+)
25673 .. 26344
672 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001926.1_g000007.1.cds

Sequence Viewer

Length: 672 bp
atggagcttcaaacccagcaacacatggaactacaacaacagcaaccaaccgaggagggaggaagcaaccaagcagccgggagtagtgccaacacgcctatcaggccaaccaataaccggtggactcccacaccagctcaactgagaattctccaggagctttactacgacagggggcttaaaaacccaaaaccagagcagattcaggggatctgtctccatctgaagccgtatgggcagatcgagaacaagaacgttttcttttggttccagaacctcaaggctcgtgagagtcagaagttgaaggaaatctggaacgttcgggttggtggatcccttgatctcaaatttggatccacaagttctactgaaggtggcagatccatcgatctcaacttcggttccaccgattccactggtgatgatgaatcgatcgatctaacccttgggttacgatcattcatggaacgacgaggaggagatcaccaggaggtcgagactcttcctctgttccctgagcacggtgaaaacatccttggtaacccgaagactacatccgagggcggtagctcatttggttactattccggtggctcatgcggttacaacagtggctcacctgtttctcttgagctcagcctcaactcatccggagctactgatctagcttag

Protein Analysis

223

Amino Acids

24.47

Weight (kDa)

5.05

Isoelectric Point (pI)

55.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000180)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr0c19g0499991 RchiOBHm_Chr0c19g0500021 RchiOBHm_Chr0c19g0500131 RchiOBHm_Chr0c31g0501321 RchiOBHm_Chr0c31g0501441 RchiOBHm_Chr1g0365611 RchiOBHm_Chr1g0366061 RchiOBHm_Chr1g0367951 RchiOBHm_Chr1g0369471 RchiOBHm_Chr1g0377271 RchiOBHm_Chr1g0379021 RchiOBHm_Chr1g0379461 RchiOBHm_Chr1g0381431 RchiOBHm_Chr1g0383551 RchiOBHm_Chr1g0383621 RchiOBHm_Chr2g0120951 RchiOBHm_Chr2g0121321 RchiOBHm_Chr2g0121381 RchiOBHm_Chr2g0121801 RchiOBHm_Chr2g0121861 RchiOBHm_Chr2g0122211 RchiOBHm_Chr2g0122471 RchiOBHm_Chr2g0122511 RchiOBHm_Chr2g0122751 RchiOBHm_Chr2g0123361 RchiOBHm_Chr2g0124071 RchiOBHm_Chr2g0124341 RchiOBHm_Chr2g0124361 RchiOBHm_Chr2g0124511 RchiOBHm_Chr2g0124641 RchiOBHm_Chr2g0125051 RchiOBHm_Chr2g0125111 RchiOBHm_Chr2g0125641 RchiOBHm_Chr2g0125871 RchiOBHm_Chr2g0125901 RchiOBHm_Chr2g0126011 RchiOBHm_Chr2g0126291 RchiOBHm_Chr2g0126341 RchiOBHm_Chr2g0126611 RchiOBHm_Chr2g0126671 RchiOBHm_Chr2g0126701 RchiOBHm_Chr2g0127021 RchiOBHm_Chr2g0127071 RchiOBHm_Chr2g0127361 RchiOBHm_Chr2g0127691 RchiOBHm_Chr2g0128041 RchiOBHm_Chr2g0128051 RchiOBHm_Chr2g0128061 RchiOBHm_Chr2g0128141 RchiOBHm_Chr2g0128171 RchiOBHm_Chr2g0128181 RchiOBHm_Chr2g0128551 RchiOBHm_Chr2g0128991 RchiOBHm_Chr2g0130061 RchiOBHm_Chr2g0130391 RchiOBHm_Chr2g0130631 RchiOBHm_Chr2g0130921 RchiOBHm_Chr2g0132731 RchiOBHm_Chr2g0133461 RchiOBHm_Chr2g0133921 RchiOBHm_Chr2g0134031 RchiOBHm_Chr2g0134281 RchiOBHm_Chr2g0134351 RchiOBHm_Chr2g0135501 RchiOBHm_Chr2g0135821 RchiOBHm_Chr2g0135931 RchiOBHm_Chr2g0137501 RchiOBHm_Chr2g0139141 RchiOBHm_Chr2g0139511 RchiOBHm_Chr2g0142411 RchiOBHm_Chr2g0143261 RchiOBHm_Chr2g0144171 RchiOBHm_Chr2g0144741 RchiOBHm_Chr2g0144841 RchiOBHm_Chr2g0145021 RchiOBHm_Chr2g0145831 RchiOBHm_Chr2g0145881 RchiOBHm_Chr2g0146081 RchiOBHm_Chr2g0146141 RchiOBHm_Chr2g0146671 RchiOBHm_Chr2g0149001 RchiOBHm_Chr2g0151811 RchiOBHm_Chr2g0151821 RchiOBHm_Chr2g0151831 RchiOBHm_Chr2g0152051 RchiOBHm_Chr2g0154791 RchiOBHm_Chr2g0155541 RchiOBHm_Chr2g0160791 RchiOBHm_Chr2g0161631 RchiOBHm_Chr2g0162151 RchiOBHm_Chr2g0162751 RchiOBHm_Chr2g0166561 RchiOBHm_Chr2g0166751 RchiOBHm_Chr2g0168891 RchiOBHm_Chr2g0170211 RchiOBHm_Chr2g0170781 RchiOBHm_Chr2g0172831 RchiOBHm_Chr2g0174791 RchiOBHm_Chr3g0448081 RchiOBHm_Chr3g0449761 RchiOBHm_Chr3g0453291 RchiOBHm_Chr3g0456271 RchiOBHm_Chr3g0456461 RchiOBHm_Chr3g0458351 RchiOBHm_Chr3g0461411 RchiOBHm_Chr3g0461511 RchiOBHm_Chr3g0463871 RchiOBHm_Chr3g0467841 RchiOBHm_Chr3g0470081 RchiOBHm_Chr3g0470571 RchiOBHm_Chr7g0187061 RchiOBHm_Chr7g0187461 RchiOBHm_Chr7g0187681 RchiOBHm_Chr7g0189901 RchiOBHm_Chr7g0190271 RchiOBHm_Chr7g0193451 RchiOBHm_Chr7g0194081 RchiOBHm_Chr7g0195771 RchiOBHm_Chr7g0196301 RchiOBHm_Chr7g0196911
rosa_multiflora Rmu_sc0000236.1_g000047 Rmu_sc0000284.1_g000007 Rmu_sc0000288.1_g000006 Rmu_sc0000507.1_g000017 Rmu_sc0000580.1_g000015 Rmu_sc0000663.1_g000011 Rmu_sc0000675.1_g000024 Rmu_sc0000693.1_g000072 Rmu_sc0000779.1_g000005 Rmu_sc0000851.1_g000015 Rmu_sc0000962.1_g000001 Rmu_sc0001493.1_g000055 Rmu_sc0001669.1_g000025 Rmu_sc0001891.1_g000051 Rmu_sc0001926.1_g000007 Rmu_sc0002082.1_g000025 Rmu_sc0002141.1_g000001 Rmu_sc0002141.1_g000004 Rmu_sc0002414.1_g000012 Rmu_sc0002557.1_g000022 Rmu_sc0002709.1_g000038 Rmu_sc0002897.1_g000004 Rmu_sc0002934.1_g000055 Rmu_sc0003692.1_g000017 Rmu_sc0004283.1_g000068 Rmu_sc0004598.1_g000010 Rmu_sc0004614.1_g000004 Rmu_sc0004805.1_g000006 Rmu_sc0005142.1_g000041 Rmu_sc0005777.1_g000001 Rmu_sc0006420.1_g000019 Rmu_sc0006803.1_g000016 Rmu_sc0007034.1_g000015 Rmu_sc0008079.1_g000017 Rmu_sc0008148.1_g000040 Rmu_sc0008608.1_g000007 Rmu_sc0008675.1_g000001 Rmu_sc0009663.1_g000001 Rmu_sc0010188.1_g000003 Rmu_sc0010739.1_g000005 Rmu_sc0016265.1_g000001 Rmu_sc0031757.1_g000001 Rmu_ssc0000087.1_g000024 Rmu_ssc0000438.1_g000029
rosa_roxburghii Rroxscaffold_1G00003350
rosa_rugosa Rorug03G0248400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 650
AciI CCGC 2 cut(s) 564, 600
AclI AACGTT 2 cut(s) 255, 318
AclWI GGATC 6 cut(s) 218, 327, 340, 348, 361, 375
AcsI RAATTY 2 cut(s) 147, 347
AcuI CTGAAG 2 cut(s) 245, 390
AfiI CCNNNNNNNGG 2 cut(s) 117, 521
AgeI ACCGGT 1 cut(s) 117
AgsI TTSAA 2 cut(s) 11, 304
AjnI CCWGG 2 cut(s) 153, 486
AjuI GAANNNNNNNTTGG 2 cut(s) 519, 551
AluBI AGCT 7 cut(s) 7, 137, 160, 570, 634, 656, 668
AluI AGCT 7 cut(s) 7, 137, 160, 570, 634, 656, 668
Alw21I GWGCWC 2 cut(s) 522, 636
Alw26I GTCTC 2 cut(s) 221, 491
AlwI GGATC 6 cut(s) 218, 327, 340, 348, 361, 375
Aor13HI TCCGGA 1 cut(s) 650
AoxI GGCC 1 cut(s) 104
ApeKI GCWGC 1 cut(s) 74
ApoI RAATTY 2 cut(s) 147, 347
AsiGI ACCGGT 1 cut(s) 117
Asp700I GAANNNNTTC 1 cut(s) 257
AsuC2I CCSGG 1 cut(s) 79
AsuHPI GGTGA 4 cut(s) 431, 476, 536, 609
BamHI GGATCC 2 cut(s) 332, 353
BanII GRGCYC 1 cut(s) 636
BauI CACGAG 1 cut(s) 285
BbsI GAAGAC 1 cut(s) 554
Bbv12I GWGCWC 2 cut(s) 522, 636
BbvI GCAGC 1 cut(s) 86
BccI CCATC 2 cut(s) 228, 392
BceAI ACGGC 1 cut(s) 214
BcgI CGANNNNNNTGC 2 cut(s) 367, 401
BciT130I CCWGG 2 cut(s) 155, 488
BcnI CCSGG 1 cut(s) 79
BcoDI GTCTC 2 cut(s) 221, 491
BfaI CTAG 1 cut(s) 665
BglI GCCNNNNNGGC 2 cut(s) 103, 235
BisI GCNGC 1 cut(s) 75
BlpI GCTNAGC 1 cut(s) 635
BlsI GCNGC 1 cut(s) 76
Bme1390I CCNGG 3 cut(s) 79, 155, 488
BmiI GGNNCC 4 cut(s) 269, 334, 355, 403
BmrFI CCNGG 3 cut(s) 79, 155, 488
BpiI GAAGAC 1 cut(s) 554
BpmI CTGGAG 1 cut(s) 137
Bpu10I CCTNAGC 1 cut(s) 516
Bpu1102I GCTNAGC 1 cut(s) 635
BpuEI CTTGAG 2 cut(s) 263, 650
BpuMI CCSGG 1 cut(s) 79
Bsa29I ATCGAT 3 cut(s) 387, 431, 435
BsaJI CCNNGG 4 cut(s) 51, 445, 535, 558
BsaWI WCCGGW 3 cut(s) 117, 587, 650
Bsc4I CCNNNNNNNGG 2 cut(s) 117, 521
Bse118I RCCGGY 1 cut(s) 117
Bse1I ACTGG 1 cut(s) 421
BseAI TCCGGA 1 cut(s) 650
BseBI CCWGG 2 cut(s) 155, 488
BseCI ATCGAT 3 cut(s) 387, 431, 435
BseDI CCNNGG 4 cut(s) 51, 445, 535, 558
BseGI GGATG 3 cut(s) 531, 554, 647
BseLI CCNNNNNNNGG 2 cut(s) 117, 521
BseMII CTCAG 3 cut(s) 134, 507, 649
BseNI ACTGG 1 cut(s) 421
BseRI GAGGAG 3 cut(s) 68, 489, 492
BseXI GCAGC 1 cut(s) 86
BseYI CCCAGC 1 cut(s) 15
Bsh1285I CGRYCG 1 cut(s) 435
BshFI GGCC 1 cut(s) 106
BshTI ACCGGT 1 cut(s) 117
BshVI ATCGAT 3 cut(s) 387, 431, 435
BsiEI CGRYCG 1 cut(s) 435
BsiHKAI GWGCWC 2 cut(s) 522, 636
BsiSI CCGG 4 cut(s) 78, 118, 588, 651
BslI CCNNNNNNNGG 2 cut(s) 117, 521
BsmAI GTCTC 2 cut(s) 221, 491
BsnI GGCC 1 cut(s) 106
Bsp1286I GDGCHC 2 cut(s) 522, 636
Bsp13I TCCGGA 1 cut(s) 650
Bsp1720I GCTNAGC 1 cut(s) 635
BspACI CCGC 2 cut(s) 564, 600
BspANI GGCC 1 cut(s) 106
BspCNI CTCAG 3 cut(s) 135, 508, 648
BspDI ATCGAT 3 cut(s) 387, 431, 435
BspEI TCCGGA 1 cut(s) 650
BspLI GGNNCC 4 cut(s) 269, 334, 355, 403
BspPI GGATC 6 cut(s) 218, 327, 340, 348, 361, 375
BsrFI RCCGGY 1 cut(s) 117
BsrI ACTGG 1 cut(s) 421
BssAI RCCGGY 1 cut(s) 117
BssECI CCNNGG 4 cut(s) 51, 445, 535, 558
BssSI CACGAG 1 cut(s) 285
BssT1I CCWWGG 2 cut(s) 445, 535
Bst2BI CACGAG 1 cut(s) 285
Bst2UI CCWGG 2 cut(s) 155, 488
Bst4CI ACNGT 2 cut(s) 524, 611
Bst6I CTCTTC 1 cut(s) 507
BstDEI CTNAG 4 cut(s) 143, 516, 635, 669
BstEII GGTNACC 1 cut(s) 539
BstF5I GGATG 3 cut(s) 531, 554, 647
BstMAI GTCTC 2 cut(s) 221, 491
BstMCI CGRYCG 1 cut(s) 435
BstMWI GCNNNNNNNGC 2 cut(s) 103, 235
BstNI CCWGG 2 cut(s) 155, 488
BstPI GGTNACC 1 cut(s) 539
BstSCI CCNGG 3 cut(s) 77, 153, 486
BstV1I GCAGC 1 cut(s) 86
BstV2I GAAGAC 1 cut(s) 554
BstX2I RGATCY 4 cut(s) 210, 332, 353, 380
BstYI RGATCY 4 cut(s) 210, 332, 353, 380
Bsu15I ATCGAT 3 cut(s) 387, 431, 435
BsuRI GGCC 1 cut(s) 106
BsuTUI ATCGAT 3 cut(s) 387, 431, 435
BtsCI GGATG 3 cut(s) 531, 554, 647
BtsIMutI CAGTG 2 cut(s) 414, 616
Cfr10I RCCGGY 1 cut(s) 117
ClaI ATCGAT 3 cut(s) 387, 431, 435
CspAI ACCGGT 1 cut(s) 117
CviAII CATG 3 cut(s) 25, 463, 597
DdeI CTNAG 4 cut(s) 143, 516, 635, 669
Eam1104I CTCTTC 1 cut(s) 507
EarI CTCTTC 1 cut(s) 507
Ecl136II GAGCTC 1 cut(s) 634
Eco130I CCWWGG 2 cut(s) 445, 535
Eco24I GRGCYC 1 cut(s) 636
Eco53kI GAGCTC 1 cut(s) 634
Eco57I CTGAAG 2 cut(s) 245, 390
Eco91I GGTNACC 1 cut(s) 539
EcoICRI GAGCTC 1 cut(s) 634
EcoO65I GGTNACC 1 cut(s) 539
EcoRI GAATTC 1 cut(s) 147
EcoRII CCWGG 2 cut(s) 153, 486
EcoT14I CCWWGG 2 cut(s) 445, 535
EcoT38I GRGCYC 1 cut(s) 636
ErhI CCWWGG 2 cut(s) 445, 535
FaeI CATG 3 cut(s) 28, 466, 600
FaiI YATR 4 cut(s) 26, 234, 464, 598
FatI CATG 3 cut(s) 24, 462, 596
Fnu4HI GCNGC 1 cut(s) 75
FokI GGATG 3 cut(s) 518, 541, 634
FriOI GRGCYC 1 cut(s) 636
Fsp4HI GCNGC 1 cut(s) 75
FspBI CTAG 1 cut(s) 665
GluI GCNGC 1 cut(s) 75
GsaI CCCAGC 1 cut(s) 19
GsuI CTGGAG 1 cut(s) 137
HaeIII GGCC 1 cut(s) 106
HapII CCGG 4 cut(s) 78, 118, 588, 651
Hin1II CATG 3 cut(s) 28, 466, 600
HinfI GANTC 6 cut(s) 124, 202, 292, 410, 428, 499
HpaII CCGG 4 cut(s) 78, 118, 588, 651
HphI GGTGA 4 cut(s) 431, 476, 536, 609
Hpy166II GTNNAC 1 cut(s) 123
Hpy188I TCNGA 3 cut(s) 225, 297, 559
Hpy188III TCNNGA 7 cut(s) 244, 271, 287, 313, 496, 629, 651
Hpy8I GTNNAC 1 cut(s) 123
Hpy99I CGWCG 1 cut(s) 474
HpyAV CCTTC 2 cut(s) 298, 365
HpyCH4III ACNGT 2 cut(s) 524, 611
HpyCH4IV ACGT 2 cut(s) 255, 318
HpyF10VI GCNNNNNNNGC 2 cut(s) 103, 235
HpyF3I CTNAG 4 cut(s) 143, 516, 635, 669
HpySE526I ACGT 2 cut(s) 255, 318
Hsp92II CATG 3 cut(s) 28, 466, 600
Kpn2I TCCGGA 1 cut(s) 650
LmnI GCTCC 3 cut(s) 4, 157, 653
Lsp1109I GCAGC 1 cut(s) 86
MaeI CTAG 1 cut(s) 665
MaeII ACGT 2 cut(s) 255, 318
MaeIII GTNAC 4 cut(s) 450, 539, 578, 602
MboII GAAGA 2 cut(s) 494, 559
MflI RGATCY 4 cut(s) 210, 332, 353, 380
MhlI GDGCHC 2 cut(s) 522, 636
MluCI AATT 2 cut(s) 147, 347
MlyI GAGTC 3 cut(s) 118, 301, 493
MroI TCCGGA 1 cut(s) 650
MroXI GAANNNNTTC 1 cut(s) 257
MseI TTAA 1 cut(s) 180
MspI CCGG 4 cut(s) 78, 118, 588, 651
MspR9I CCNGG 3 cut(s) 79, 155, 488
MvaI CCWGG 2 cut(s) 155, 488
MwoI GCNNNNNNNGC 2 cut(s) 103, 235
NciI CCSGG 1 cut(s) 79
NlaIII CATG 3 cut(s) 28, 466, 600
NlaIV GGNNCC 4 cut(s) 269, 334, 355, 403
PcsI WCGNNNNNNNCGW 1 cut(s) 405
PdmI GAANNNNTTC 1 cut(s) 257
PfeI GAWTC 3 cut(s) 202, 410, 428
PfoI TCCNGGA 1 cut(s) 153
PinAI ACCGGT 1 cut(s) 117
PkrI GCNGC 1 cut(s) 76
Ple19I CGATCG 1 cut(s) 435
PleI GAGTC 3 cut(s) 118, 300, 493
PpsI GAGTC 3 cut(s) 118, 300, 493
Psp124BI GAGCTC 1 cut(s) 636
Psp1406I AACGTT 2 cut(s) 255, 318
Psp6I CCWGG 2 cut(s) 153, 486
PspEI GGTNACC 1 cut(s) 539
PspFI CCCAGC 1 cut(s) 15
PspGI CCWGG 2 cut(s) 153, 486
PspN4I GGNNCC 4 cut(s) 269, 334, 355, 403
PsuI RGATCY 4 cut(s) 210, 332, 353, 380
PvuI CGATCG 1 cut(s) 435
SacI GAGCTC 1 cut(s) 636
SaqAI TTAA 1 cut(s) 180
SatI GCNGC 1 cut(s) 75
SchI GAGTC 3 cut(s) 118, 301, 493
ScrFI CCNGG 3 cut(s) 79, 155, 488
SduI GDGCHC 2 cut(s) 522, 636
SmlI CTYRAG 2 cut(s) 278, 629
SmoI CTYRAG 2 cut(s) 278, 629
Sse9I AATT 2 cut(s) 147, 347
SsiI CCGC 2 cut(s) 564, 600
SspMI CTAG 1 cut(s) 665
SstI GAGCTC 1 cut(s) 636
StyD4I CCNGG 3 cut(s) 77, 153, 486
StyI CCWWGG 2 cut(s) 445, 535
TaaI ACNGT 2 cut(s) 524, 611
TaiI ACGT 2 cut(s) 258, 321
TaqI TCGA 5 cut(s) 243, 387, 431, 435, 495
TasI AATT 2 cut(s) 147, 347
TfiI GAWTC 3 cut(s) 202, 410, 428
Tru1I TTAA 1 cut(s) 180
Tru9I TTAA 1 cut(s) 180
TscAI CASTG 2 cut(s) 421, 616
TseI GCWGC 1 cut(s) 74
TspDTI ATGAA 2 cut(s) 441, 451
TspRI CASTG 2 cut(s) 421, 616
XapI RAATTY 2 cut(s) 147, 347
XmnI GAANNNNTTC 1 cut(s) 257
XspI CTAG 1 cut(s) 665
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.