Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002897.1

Orthogroup ID

OG0000180

Physical Location & Seq

Genomic Coordinates Reverse (-)

27330 .. 28084

Gene Structure 755 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002897.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

atggaaccacgaactctgcaactaatggaactacaaacccagcaaccaaccgaggagggaggaagcaaccaagcagccgggagtagtgccaacacgcccatcaggcagactaataaccggtggactcccacaccagatcaactacgaatcctcaaggtgctttactatgacaaggatcttaggtacccaactccagagcagattcaagatatctgtctccatctgaaacagtatggccagattgaggacaagaacgtcttcttttggttccagaagctcaaagttcgagagaaggagaagatgaggttaattcagaacgttcgggttggtggatctctcgatgtcaactttggatccactagttctactgatgatggtggaggacaaactttcatggaacaacgaggaggagatcaccaggagattgaaactcttcctctgttccccgtacacggtgaggacgtacttggtaacccgaagactacttccgaggaaggtagcacatatggttactattccggtggctcgggcggttacaacagtggctctcacgtttctcttgagcttagcctcaacccatccggagccgttgatttggcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

200

Amino Acids

22.23

Weight (kDa)

5.01

Isoelectric Point (pI)

43.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000180)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c19g0499991 RchiOBHm_Chr0c19g0500021 RchiOBHm_Chr0c19g0500131 RchiOBHm_Chr0c31g0501321 RchiOBHm_Chr0c31g0501441 RchiOBHm_Chr1g0365611 RchiOBHm_Chr1g0366061 RchiOBHm_Chr1g0367951 RchiOBHm_Chr1g0369471 RchiOBHm_Chr1g0377271 RchiOBHm_Chr1g0379021 RchiOBHm_Chr1g0379461 RchiOBHm_Chr1g0381431 RchiOBHm_Chr1g0383551 RchiOBHm_Chr1g0383621 RchiOBHm_Chr2g0120951 RchiOBHm_Chr2g0121321 RchiOBHm_Chr2g0121381 RchiOBHm_Chr2g0121801 RchiOBHm_Chr2g0121861 RchiOBHm_Chr2g0122211 RchiOBHm_Chr2g0122471 RchiOBHm_Chr2g0122511 RchiOBHm_Chr2g0122751 RchiOBHm_Chr2g0123361 RchiOBHm_Chr2g0124071 RchiOBHm_Chr2g0124341 RchiOBHm_Chr2g0124361 RchiOBHm_Chr2g0124511 RchiOBHm_Chr2g0124641 RchiOBHm_Chr2g0125051 RchiOBHm_Chr2g0125111 RchiOBHm_Chr2g0125641 RchiOBHm_Chr2g0125871 RchiOBHm_Chr2g0125901 RchiOBHm_Chr2g0126011 RchiOBHm_Chr2g0126291 RchiOBHm_Chr2g0126341 RchiOBHm_Chr2g0126611 RchiOBHm_Chr2g0126671 RchiOBHm_Chr2g0126701 RchiOBHm_Chr2g0127021 RchiOBHm_Chr2g0127071 RchiOBHm_Chr2g0127361 RchiOBHm_Chr2g0127691 RchiOBHm_Chr2g0128041 RchiOBHm_Chr2g0128051 RchiOBHm_Chr2g0128061 RchiOBHm_Chr2g0128141 RchiOBHm_Chr2g0128171 RchiOBHm_Chr2g0128181 RchiOBHm_Chr2g0128551 RchiOBHm_Chr2g0128991 RchiOBHm_Chr2g0130061 RchiOBHm_Chr2g0130391 RchiOBHm_Chr2g0130631 RchiOBHm_Chr2g0130921 RchiOBHm_Chr2g0132731 RchiOBHm_Chr2g0133461 RchiOBHm_Chr2g0133921 RchiOBHm_Chr2g0134031 RchiOBHm_Chr2g0134281 RchiOBHm_Chr2g0134351 RchiOBHm_Chr2g0135501 RchiOBHm_Chr2g0135821 RchiOBHm_Chr2g0135931 RchiOBHm_Chr2g0137501 RchiOBHm_Chr2g0139141 RchiOBHm_Chr2g0139511 RchiOBHm_Chr2g0142411 RchiOBHm_Chr2g0143261 RchiOBHm_Chr2g0144171 RchiOBHm_Chr2g0144741 RchiOBHm_Chr2g0144841 RchiOBHm_Chr2g0145021 RchiOBHm_Chr2g0145831 RchiOBHm_Chr2g0145881 RchiOBHm_Chr2g0146081 RchiOBHm_Chr2g0146141 RchiOBHm_Chr2g0146671 RchiOBHm_Chr2g0149001 RchiOBHm_Chr2g0151811 RchiOBHm_Chr2g0151821 RchiOBHm_Chr2g0151831 RchiOBHm_Chr2g0152051 RchiOBHm_Chr2g0154791 RchiOBHm_Chr2g0155541 RchiOBHm_Chr2g0160791 RchiOBHm_Chr2g0161631 RchiOBHm_Chr2g0162151 RchiOBHm_Chr2g0162751 RchiOBHm_Chr2g0166561 RchiOBHm_Chr2g0166751 RchiOBHm_Chr2g0168891 RchiOBHm_Chr2g0170211 RchiOBHm_Chr2g0170781 RchiOBHm_Chr2g0172831 RchiOBHm_Chr2g0174791 RchiOBHm_Chr3g0448081 RchiOBHm_Chr3g0449761 RchiOBHm_Chr3g0453291 RchiOBHm_Chr3g0456271 RchiOBHm_Chr3g0456461 RchiOBHm_Chr3g0458351 RchiOBHm_Chr3g0461411 RchiOBHm_Chr3g0461511 RchiOBHm_Chr3g0463871 RchiOBHm_Chr3g0467841 RchiOBHm_Chr3g0470081 RchiOBHm_Chr3g0470571 RchiOBHm_Chr7g0187061 RchiOBHm_Chr7g0187461 RchiOBHm_Chr7g0187681 RchiOBHm_Chr7g0189901 RchiOBHm_Chr7g0190271 RchiOBHm_Chr7g0193451 RchiOBHm_Chr7g0194081 RchiOBHm_Chr7g0195771 RchiOBHm_Chr7g0196301 RchiOBHm_Chr7g0196911
rosa_multiflora	Rmu_sc0000236.1_g000047 Rmu_sc0000284.1_g000007 Rmu_sc0000288.1_g000006 Rmu_sc0000507.1_g000017 Rmu_sc0000580.1_g000015 Rmu_sc0000663.1_g000011 Rmu_sc0000675.1_g000024 Rmu_sc0000693.1_g000072 Rmu_sc0000779.1_g000005 Rmu_sc0000851.1_g000015 Rmu_sc0000962.1_g000001 Rmu_sc0001493.1_g000055 Rmu_sc0001669.1_g000025 Rmu_sc0001891.1_g000051 Rmu_sc0001926.1_g000007 Rmu_sc0002082.1_g000025 Rmu_sc0002141.1_g000001 Rmu_sc0002141.1_g000004 Rmu_sc0002414.1_g000012 Rmu_sc0002557.1_g000022 Rmu_sc0002709.1_g000038 Rmu_sc0002897.1_g000004 Rmu_sc0002934.1_g000055 Rmu_sc0003692.1_g000017 Rmu_sc0004283.1_g000068 Rmu_sc0004598.1_g000010 Rmu_sc0004614.1_g000004 Rmu_sc0004805.1_g000006 Rmu_sc0005142.1_g000041 Rmu_sc0005777.1_g000001 Rmu_sc0006420.1_g000019 Rmu_sc0006803.1_g000016 Rmu_sc0007034.1_g000015 Rmu_sc0008079.1_g000017 Rmu_sc0008148.1_g000040 Rmu_sc0008608.1_g000007 Rmu_sc0008675.1_g000001 Rmu_sc0009663.1_g000001 Rmu_sc0010188.1_g000003 Rmu_sc0010739.1_g000005 Rmu_sc0016265.1_g000001 Rmu_sc0031757.1_g000001 Rmu_ssc0000087.1_g000024 Rmu_ssc0000438.1_g000029
rosa_roxburghii	Rroxscaffold_1G00003350
rosa_rugosa	Rorug03G0248400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	254
Acc65I	GGTACC	1 cut(s)	183
AccB1I	GGYRCC	1 cut(s)	183
AccIII	TCCGGA	1 cut(s)	581
AciI	CCGC	1 cut(s)	531
AclI	AACGTT	1 cut(s)	318
AclWI	GGATC	4 cut(s)	183, 340, 348, 361
AcoI	YGGCCR	1 cut(s)	235
AfaI	GTAC	3 cut(s)	185, 450, 465
AfiI	CCNNNNNNNGG	2 cut(s)	244, 452
AgeI	ACCGGT	1 cut(s)	117
AgsI	TTSAA	2 cut(s)	206, 428
AhlI	ACTAGT	1 cut(s)	359
AjnI	CCWGG	1 cut(s)	417
AluBI	AGCT	2 cut(s)	277, 565
AluI	AGCT	2 cut(s)	277, 565
Alw26I	GTCTC	1 cut(s)	221
AlwI	GGATC	4 cut(s)	183, 340, 348, 361
Ama87I	CYCGRG	1 cut(s)	526
Aor13HI	TCCGGA	1 cut(s)	581
AoxI	GGCC	1 cut(s)	235
ApeKI	GCWGC	1 cut(s)	74
AsiGI	ACCGGT	1 cut(s)	117
Asp700I	GAANNNNTTC	2 cut(s)	257, 432
Asp718I	GGTACC	1 cut(s)	183
AsuC2I	CCSGG	1 cut(s)	79
AsuHPI	GGTGA	2 cut(s)	407, 467
AvaI	CYCGRG	1 cut(s)	526
BalI	TGGCCA	1 cut(s)	237
BamHI	GGATCC	1 cut(s)	353
BanI	GGYRCC	1 cut(s)	183
BbsI	GAAGAC	2 cut(s)	250, 485
BbvI	GCAGC	1 cut(s)	86
BccI	CCATC	4 cut(s)	107, 228, 368, 586
BceAI	ACGGC	1 cut(s)	572
BciT130I	CCWGG	1 cut(s)	419
BcnI	CCSGG	1 cut(s)	79
BcoDI	GTCTC	1 cut(s)	221
BcuI	ACTAGT	1 cut(s)	359
BfaI	CTAG	1 cut(s)	360
BglI	GCCNNNNNGGC	1 cut(s)	103
BisI	GCNGC	1 cut(s)	75
BlpI	GCTNAGC	1 cut(s)	566
BlsI	GCNGC	1 cut(s)	76
Bme1390I	CCNGG	2 cut(s)	79, 419
BmeT110I	CYCGRG	1 cut(s)	526
BmiI	GGNNCC	5 cut(s)	6, 185, 269, 355, 586
BmrFI	CCNGG	2 cut(s)	79, 419
BpiI	GAAGAC	2 cut(s)	250, 485
BpmI	CTGGAG	1 cut(s)	177
Bpu1102I	GCTNAGC	1 cut(s)	566
BpuEI	CTTGAG	2 cut(s)	137, 581
BpuMI	CCSGG	1 cut(s)	79
BsaJI	CCNNGG	2 cut(s)	51, 489
BsaWI	WCCGGW	3 cut(s)	117, 518, 581
Bsc4I	CCNNNNNNNGG	2 cut(s)	244, 452
Bse118I	RCCGGY	1 cut(s)	117
BseAI	TCCGGA	1 cut(s)	581
BseBI	CCWGG	1 cut(s)	419
BseDI	CCNNGG	2 cut(s)	51, 489
BseGI	GGATG	1 cut(s)	578
BseLI	CCNNNNNNNGG	2 cut(s)	244, 452
BseRI	GAGGAG	3 cut(s)	68, 420, 423
BseXI	GCAGC	1 cut(s)	86
BseYI	CCCAGC	1 cut(s)	39
BshFI	GGCC	1 cut(s)	237
BshNI	GGYRCC	1 cut(s)	183
BshTI	ACCGGT	1 cut(s)	117
BsiHKCI	CYCGRG	1 cut(s)	526
BsiSI	CCGG	4 cut(s)	78, 118, 519, 582
BslI	CCNNNNNNNGG	2 cut(s)	244, 452
BsmAI	GTCTC	1 cut(s)	221
BsnI	GGCC	1 cut(s)	237
BsoBI	CYCGRG	1 cut(s)	526
Bsp13I	TCCGGA	1 cut(s)	581
Bsp143I	GATC	5 cut(s)	136, 175, 332, 353, 412
Bsp1720I	GCTNAGC	1 cut(s)	566
BspACI	CCGC	1 cut(s)	531
BspANI	GGCC	1 cut(s)	237
BspEI	TCCGGA	1 cut(s)	581
BspLI	GGNNCC	5 cut(s)	6, 185, 269, 355, 586
BspPI	GGATC	4 cut(s)	183, 340, 348, 361
BspT107I	GGYRCC	1 cut(s)	183
BsrFI	RCCGGY	1 cut(s)	117
BssAI	RCCGGY	1 cut(s)	117
BssECI	CCNNGG	2 cut(s)	51, 489
BssMI	GATC	5 cut(s)	136, 175, 332, 353, 412
Bst2UI	CCWGG	1 cut(s)	419
Bst4CI	ACNGT	3 cut(s)	231, 455, 542
Bst6I	CTCTTC	1 cut(s)	438
BstDEI	CTNAG	3 cut(s)	179, 566, 600
BstEII	GGTNACC	1 cut(s)	470
BstF5I	GGATG	1 cut(s)	578
BstKTI	GATC	5 cut(s)	139, 178, 335, 356, 415
BstMAI	GTCTC	1 cut(s)	221
BstMBI	GATC	5 cut(s)	136, 175, 332, 353, 412
BstMWI	GCNNNNNNNGC	1 cut(s)	103
BstNI	CCWGG	1 cut(s)	419
BstPI	GGTNACC	1 cut(s)	470
BstSCI	CCNGG	2 cut(s)	77, 417
BstV1I	GCAGC	1 cut(s)	86
BstV2I	GAAGAC	2 cut(s)	250, 485
BstX2I	RGATCY	3 cut(s)	175, 332, 353
BstYI	RGATCY	3 cut(s)	175, 332, 353
BsuRI	GGCC	1 cut(s)	237
BtsCI	GGATG	1 cut(s)	578
BtsIMutI	CAGTG	1 cut(s)	547
Cfr10I	RCCGGY	1 cut(s)	117
Csp6I	GTAC	3 cut(s)	184, 449, 464
CspAI	ACCGGT	1 cut(s)	117
CviAII	CATG	1 cut(s)	394
CviJI	RGCY	9 cut(s)	77, 237, 277, 525, 546, 565, 570, 587, 599
CviKI_1	RGCY	9 cut(s)	77, 237, 277, 525, 546, 565, 570, 587, 599
CviQI	GTAC	3 cut(s)	184, 449, 464
DdeI	CTNAG	3 cut(s)	179, 566, 600
DpnI	GATC	5 cut(s)	138, 177, 334, 355, 414
DpnII	GATC	5 cut(s)	136, 175, 332, 353, 412
DrdI	GACNNNNNNGTC	1 cut(s)	254
DseDI	GACNNNNNNGTC	1 cut(s)	254
EaeI	YGGCCR	1 cut(s)	235
Eam1104I	CTCTTC	1 cut(s)	438
EarI	CTCTTC	1 cut(s)	438
Eco32I	GATATC	1 cut(s)	211
Eco88I	CYCGRG	1 cut(s)	526
Eco91I	GGTNACC	1 cut(s)	470
EcoO65I	GGTNACC	1 cut(s)	470
EcoRII	CCWGG	1 cut(s)	417
EcoRV	GATATC	1 cut(s)	211
FaeI	CATG	1 cut(s)	397
FaiI	YATR	5 cut(s)	168, 234, 395, 505, 507
FalI	AAGNNNNNCTT	2 cut(s)	242, 274
FatI	CATG	1 cut(s)	393
FauNDI	CATATG	1 cut(s)	505
Fnu4HI	GCNGC	1 cut(s)	75
FokI	GGATG	1 cut(s)	565
Fsp4HI	GCNGC	1 cut(s)	75
FspBI	CTAG	1 cut(s)	360
GluI	GCNGC	1 cut(s)	75
GsaI	CCCAGC	1 cut(s)	43
GsuI	CTGGAG	1 cut(s)	177
HaeIII	GGCC	1 cut(s)	237
HapII	CCGG	4 cut(s)	78, 118, 519, 582
Hin1II	CATG	1 cut(s)	397
HincII	GTYRAC	1 cut(s)	346
HindII	GTYRAC	1 cut(s)	346
HinfI	GANTC	3 cut(s)	124, 147, 202
HpaII	CCGG	4 cut(s)	78, 118, 519, 582
HphI	GGTGA	2 cut(s)	407, 467
Hpy166II	GTNNAC	3 cut(s)	123, 346, 451
Hpy188I	TCNGA	3 cut(s)	225, 315, 490
Hpy188III	TCNNGA	7 cut(s)	194, 206, 271, 287, 338, 560, 582
Hpy8I	GTNNAC	3 cut(s)	123, 346, 451
HpyAV	CCTTC	2 cut(s)	286, 488
HpyCH4III	ACNGT	3 cut(s)	231, 455, 542
HpyCH4IV	ACGT	4 cut(s)	255, 318, 462, 552
HpyCH4V	TGCA	1 cut(s)	19
HpyF10VI	GCNNNNNNNGC	1 cut(s)	103
HpyF3I	CTNAG	3 cut(s)	179, 566, 600
HpySE526I	ACGT	4 cut(s)	255, 318, 462, 552
Hsp92II	CATG	1 cut(s)	397
Kpn2I	TCCGGA	1 cut(s)	581
KpnI	GGTACC	1 cut(s)	187
Kzo9I	GATC	5 cut(s)	136, 175, 332, 353, 412
LmnI	GCTCC	1 cut(s)	584
Lsp1109I	GCAGC	1 cut(s)	86
MaeI	CTAG	1 cut(s)	360
MaeII	ACGT	4 cut(s)	255, 318, 462, 552
MaeIII	GTNAC	3 cut(s)	470, 509, 533
MalI	GATC	5 cut(s)	138, 177, 334, 355, 414
MboI	GATC	5 cut(s)	136, 175, 332, 353, 412
MboII	GAAGA	4 cut(s)	250, 310, 425, 490
MflI	RGATCY	3 cut(s)	175, 332, 353
MlsI	TGGCCA	1 cut(s)	237
MluCI	AATT	1 cut(s)	309
MluNI	TGGCCA	1 cut(s)	237
MlyI	GAGTC	1 cut(s)	118
Mox20I	TGGCCA	1 cut(s)	237
MroI	TCCGGA	1 cut(s)	581
MroXI	GAANNNNTTC	2 cut(s)	257, 432
MscI	TGGCCA	1 cut(s)	237
MseI	TTAA	1 cut(s)	308
Msp20I	TGGCCA	1 cut(s)	237
MspI	CCGG	4 cut(s)	78, 118, 519, 582
MspR9I	CCNGG	2 cut(s)	79, 419
MvaI	CCWGG	1 cut(s)	419
MwoI	GCNNNNNNNGC	1 cut(s)	103
NciI	CCSGG	1 cut(s)	79
NdeI	CATATG	1 cut(s)	505
NdeII	GATC	5 cut(s)	136, 175, 332, 353, 412
NlaIII	CATG	1 cut(s)	397
NlaIV	GGNNCC	5 cut(s)	6, 185, 269, 355, 586
PcsI	WCGNNNNNNNCGW	1 cut(s)	459
PdmI	GAANNNNTTC	2 cut(s)	257, 432
PfeI	GAWTC	2 cut(s)	147, 202
PinAI	ACCGGT	1 cut(s)	117
PkrI	GCNGC	1 cut(s)	76
PleI	GAGTC	1 cut(s)	118
PpsI	GAGTC	1 cut(s)	118
Psp1406I	AACGTT	1 cut(s)	318
Psp6I	CCWGG	1 cut(s)	417
PspEI	GGTNACC	1 cut(s)	470
PspFI	CCCAGC	1 cut(s)	39
PspGI	CCWGG	1 cut(s)	417
PspN4I	GGNNCC	5 cut(s)	6, 185, 269, 355, 586
PsuI	RGATCY	3 cut(s)	175, 332, 353
RsaI	GTAC	3 cut(s)	185, 450, 465
RsaNI	GTAC	3 cut(s)	184, 449, 464
SaqAI	TTAA	1 cut(s)	308
SatI	GCNGC	1 cut(s)	75
Sau3AI	GATC	5 cut(s)	136, 175, 332, 353, 412
SchI	GAGTC	1 cut(s)	118
ScrFI	CCNGG	2 cut(s)	79, 419
SmlI	CTYRAG	2 cut(s)	152, 560
SmoI	CTYRAG	2 cut(s)	152, 560
SpeI	ACTAGT	1 cut(s)	359
Sse9I	AATT	1 cut(s)	309
SsiI	CCGC	1 cut(s)	531
SspMI	CTAG	1 cut(s)	360
StyD4I	CCNGG	2 cut(s)	77, 417
TaaI	ACNGT	3 cut(s)	231, 455, 542
TaiI	ACGT	4 cut(s)	258, 321, 465, 555
TaqI	TCGA	2 cut(s)	286, 339
TasI	AATT	1 cut(s)	309
TfiI	GAWTC	2 cut(s)	147, 202
Tru1I	TTAA	1 cut(s)	308
Tru9I	TTAA	1 cut(s)	308
TscAI	CASTG	1 cut(s)	547
TseI	GCWGC	1 cut(s)	74
TspDTI	ATGAA	1 cut(s)	382
TspRI	CASTG	1 cut(s)	547
XmnI	GAANNNNTTC	2 cut(s)	257, 432
XspI	CTAG	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.