Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006420.1

Orthogroup ID

OG0000180

Physical Location & Seq

Genomic Coordinates Forward (+)

84620 .. 85460

Gene Structure 841 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006420.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

atggaaccacgaactctgcaactaatggagcttcaaacccagcaacaaatggaactacaagcccaacaaccaaccgaggagggaggaagcacccaagcagccgggagcagtgccaacacgcctatcaggccgaccaatatccggtggactcccacaccagctcaactaagaatccttcaggggctctactatgacaagggtcacaagtacccaactccagagaagattcaagagatctgtcttcatctgaaaccgtatggccagatcgaggacaagaacgtcttcttttggttccagaacctcaaggctcgaggacaatcattcatggaacaacgaggaggagatcaccaggaggtcgagactcttcccctgttccccgtgcatggtgaagacgtccttggtaacccgaagattacatccgaggaaggtagcgcatttggttactattccggtggcttaggcggttacaacagtggctctcctgtttcttttgagctcagcctcaacccatccggagctgctgacttagcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

177

Amino Acids

19.59

Weight (kDa)

5.06

Isoelectric Point (pI)

56.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000180)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c19g0499991 RchiOBHm_Chr0c19g0500021 RchiOBHm_Chr0c19g0500131 RchiOBHm_Chr0c31g0501321 RchiOBHm_Chr0c31g0501441 RchiOBHm_Chr1g0365611 RchiOBHm_Chr1g0366061 RchiOBHm_Chr1g0367951 RchiOBHm_Chr1g0369471 RchiOBHm_Chr1g0377271 RchiOBHm_Chr1g0379021 RchiOBHm_Chr1g0379461 RchiOBHm_Chr1g0381431 RchiOBHm_Chr1g0383551 RchiOBHm_Chr1g0383621 RchiOBHm_Chr2g0120951 RchiOBHm_Chr2g0121321 RchiOBHm_Chr2g0121381 RchiOBHm_Chr2g0121801 RchiOBHm_Chr2g0121861 RchiOBHm_Chr2g0122211 RchiOBHm_Chr2g0122471 RchiOBHm_Chr2g0122511 RchiOBHm_Chr2g0122751 RchiOBHm_Chr2g0123361 RchiOBHm_Chr2g0124071 RchiOBHm_Chr2g0124341 RchiOBHm_Chr2g0124361 RchiOBHm_Chr2g0124511 RchiOBHm_Chr2g0124641 RchiOBHm_Chr2g0125051 RchiOBHm_Chr2g0125111 RchiOBHm_Chr2g0125641 RchiOBHm_Chr2g0125871 RchiOBHm_Chr2g0125901 RchiOBHm_Chr2g0126011 RchiOBHm_Chr2g0126291 RchiOBHm_Chr2g0126341 RchiOBHm_Chr2g0126611 RchiOBHm_Chr2g0126671 RchiOBHm_Chr2g0126701 RchiOBHm_Chr2g0127021 RchiOBHm_Chr2g0127071 RchiOBHm_Chr2g0127361 RchiOBHm_Chr2g0127691 RchiOBHm_Chr2g0128041 RchiOBHm_Chr2g0128051 RchiOBHm_Chr2g0128061 RchiOBHm_Chr2g0128141 RchiOBHm_Chr2g0128171 RchiOBHm_Chr2g0128181 RchiOBHm_Chr2g0128551 RchiOBHm_Chr2g0128991 RchiOBHm_Chr2g0130061 RchiOBHm_Chr2g0130391 RchiOBHm_Chr2g0130631 RchiOBHm_Chr2g0130921 RchiOBHm_Chr2g0132731 RchiOBHm_Chr2g0133461 RchiOBHm_Chr2g0133921 RchiOBHm_Chr2g0134031 RchiOBHm_Chr2g0134281 RchiOBHm_Chr2g0134351 RchiOBHm_Chr2g0135501 RchiOBHm_Chr2g0135821 RchiOBHm_Chr2g0135931 RchiOBHm_Chr2g0137501 RchiOBHm_Chr2g0139141 RchiOBHm_Chr2g0139511 RchiOBHm_Chr2g0142411 RchiOBHm_Chr2g0143261 RchiOBHm_Chr2g0144171 RchiOBHm_Chr2g0144741 RchiOBHm_Chr2g0144841 RchiOBHm_Chr2g0145021 RchiOBHm_Chr2g0145831 RchiOBHm_Chr2g0145881 RchiOBHm_Chr2g0146081 RchiOBHm_Chr2g0146141 RchiOBHm_Chr2g0146671 RchiOBHm_Chr2g0149001 RchiOBHm_Chr2g0151811 RchiOBHm_Chr2g0151821 RchiOBHm_Chr2g0151831 RchiOBHm_Chr2g0152051 RchiOBHm_Chr2g0154791 RchiOBHm_Chr2g0155541 RchiOBHm_Chr2g0160791 RchiOBHm_Chr2g0161631 RchiOBHm_Chr2g0162151 RchiOBHm_Chr2g0162751 RchiOBHm_Chr2g0166561 RchiOBHm_Chr2g0166751 RchiOBHm_Chr2g0168891 RchiOBHm_Chr2g0170211 RchiOBHm_Chr2g0170781 RchiOBHm_Chr2g0172831 RchiOBHm_Chr2g0174791 RchiOBHm_Chr3g0448081 RchiOBHm_Chr3g0449761 RchiOBHm_Chr3g0453291 RchiOBHm_Chr3g0456271 RchiOBHm_Chr3g0456461 RchiOBHm_Chr3g0458351 RchiOBHm_Chr3g0461411 RchiOBHm_Chr3g0461511 RchiOBHm_Chr3g0463871 RchiOBHm_Chr3g0467841 RchiOBHm_Chr3g0470081 RchiOBHm_Chr3g0470571 RchiOBHm_Chr7g0187061 RchiOBHm_Chr7g0187461 RchiOBHm_Chr7g0187681 RchiOBHm_Chr7g0189901 RchiOBHm_Chr7g0190271 RchiOBHm_Chr7g0193451 RchiOBHm_Chr7g0194081 RchiOBHm_Chr7g0195771 RchiOBHm_Chr7g0196301 RchiOBHm_Chr7g0196911
rosa_multiflora	Rmu_sc0000236.1_g000047 Rmu_sc0000284.1_g000007 Rmu_sc0000288.1_g000006 Rmu_sc0000507.1_g000017 Rmu_sc0000580.1_g000015 Rmu_sc0000663.1_g000011 Rmu_sc0000675.1_g000024 Rmu_sc0000693.1_g000072 Rmu_sc0000779.1_g000005 Rmu_sc0000851.1_g000015 Rmu_sc0000962.1_g000001 Rmu_sc0001493.1_g000055 Rmu_sc0001669.1_g000025 Rmu_sc0001891.1_g000051 Rmu_sc0001926.1_g000007 Rmu_sc0002082.1_g000025 Rmu_sc0002141.1_g000001 Rmu_sc0002141.1_g000004 Rmu_sc0002414.1_g000012 Rmu_sc0002557.1_g000022 Rmu_sc0002709.1_g000038 Rmu_sc0002897.1_g000004 Rmu_sc0002934.1_g000055 Rmu_sc0003692.1_g000017 Rmu_sc0004283.1_g000068 Rmu_sc0004598.1_g000010 Rmu_sc0004614.1_g000004 Rmu_sc0004805.1_g000006 Rmu_sc0005142.1_g000041 Rmu_sc0005777.1_g000001 Rmu_sc0006420.1_g000019 Rmu_sc0006803.1_g000016 Rmu_sc0007034.1_g000015 Rmu_sc0008079.1_g000017 Rmu_sc0008148.1_g000040 Rmu_sc0008608.1_g000007 Rmu_sc0008675.1_g000001 Rmu_sc0009663.1_g000001 Rmu_sc0010188.1_g000003 Rmu_sc0010739.1_g000005 Rmu_sc0016265.1_g000001 Rmu_sc0031757.1_g000001 Rmu_ssc0000087.1_g000024 Rmu_ssc0000438.1_g000029
rosa_roxburghii	Rroxscaffold_1G00003350
rosa_rugosa	Rorug03G0248400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	278
AatII	GACGTC	1 cut(s)	396
AccIII	TCCGGA	1 cut(s)	512
AciI	CCGC	1 cut(s)	462
AcoI	YGGCCR	1 cut(s)	259
AcuI	CTGAAG	1 cut(s)	161
AcyI	GRCGYC	1 cut(s)	393
AfaI	GTAC	1 cut(s)	209
AfiI	CCNNNNNNNGG	3 cut(s)	141, 268, 383
AgsI	TTSAA	2 cut(s)	35, 230
AjnI	CCWGG	1 cut(s)	348
AjuI	GAANNNNNNNTTGG	2 cut(s)	381, 413
AluBI	AGCT	5 cut(s)	31, 161, 496, 518, 530
AluI	AGCT	5 cut(s)	31, 161, 496, 518, 530
Alw21I	GWGCWC	1 cut(s)	498
Alw26I	GTCTC	1 cut(s)	353
Ama87I	CYCGRG	1 cut(s)	309
Aor13HI	TCCGGA	1 cut(s)	512
AoxI	GGCC	2 cut(s)	128, 259
ApeKI	GCWGC	2 cut(s)	98, 518
Asp700I	GAANNNNTTC	1 cut(s)	281
AspLEI	GCGC	1 cut(s)	434
AsuC2I	CCSGG	1 cut(s)	103
AsuHPI	GGTGA	2 cut(s)	338, 398
AvaI	CYCGRG	1 cut(s)	309
BalI	TGGCCA	1 cut(s)	261
BanII	GRGCYC	2 cut(s)	186, 498
BbsI	GAAGAC	3 cut(s)	233, 274, 396
Bbv12I	GWGCWC	1 cut(s)	498
BbvI	GCAGC	2 cut(s)	110, 505
BccI	CCATC	1 cut(s)	517
BciT130I	CCWGG	1 cut(s)	350
BcnI	CCSGG	1 cut(s)	103
BcoDI	GTCTC	1 cut(s)	353
BglI	GCCNNNNNGGC	1 cut(s)	127
BglII	AGATCT	1 cut(s)	234
BisI	GCNGC	2 cut(s)	99, 519
BlpI	GCTNAGC	1 cut(s)	497
BlsI	GCNGC	2 cut(s)	100, 520
Bme1390I	CCNGG	2 cut(s)	103, 350
BmeT110I	CYCGRG	1 cut(s)	309
BmiI	GGNNCC	2 cut(s)	6, 293
BmrFI	CCNGG	2 cut(s)	103, 350
BoxI	GACNNNNGTC	1 cut(s)	198
BpiI	GAAGAC	3 cut(s)	233, 274, 396
BpmI	CTGGAG	1 cut(s)	201
Bpu10I	CCTNAGC	1 cut(s)	457
Bpu1102I	GCTNAGC	1 cut(s)	497
BpuEI	CTTGAG	1 cut(s)	287
BpuMI	CCSGG	1 cut(s)	103
BsaHI	GRCGYC	1 cut(s)	393
BsaJI	CCNNGG	3 cut(s)	75, 397, 420
BsaWI	WCCGGW	3 cut(s)	141, 449, 512
Bsc4I	CCNNNNNNNGG	3 cut(s)	141, 268, 383
BseAI	TCCGGA	1 cut(s)	512
BseBI	CCWGG	1 cut(s)	350
BseDI	CCNNGG	3 cut(s)	75, 397, 420
BseGI	GGATG	2 cut(s)	416, 509
BseLI	CCNNNNNNNGG	3 cut(s)	141, 268, 383
BseMII	CTCAG	1 cut(s)	511
BseRI	GAGGAG	3 cut(s)	92, 351, 354
BseXI	GCAGC	2 cut(s)	110, 505
BseYI	CCCAGC	1 cut(s)	39
BshFI	GGCC	2 cut(s)	130, 261
BsiHKAI	GWGCWC	1 cut(s)	498
BsiHKCI	CYCGRG	1 cut(s)	309
BsiSI	CCGG	4 cut(s)	102, 142, 450, 513
BslI	CCNNNNNNNGG	3 cut(s)	141, 268, 383
BsmAI	GTCTC	1 cut(s)	353
BsnI	GGCC	2 cut(s)	130, 261
BsoBI	CYCGRG	1 cut(s)	309
Bsp1286I	GDGCHC	2 cut(s)	186, 498
Bsp13I	TCCGGA	1 cut(s)	512
Bsp143I	GATC	3 cut(s)	234, 264, 343
Bsp1720I	GCTNAGC	1 cut(s)	497
BspACI	CCGC	1 cut(s)	462
BspANI	GGCC	2 cut(s)	130, 261
BspCNI	CTCAG	1 cut(s)	510
BspEI	TCCGGA	1 cut(s)	512
BspLI	GGNNCC	2 cut(s)	6, 293
BssECI	CCNNGG	3 cut(s)	75, 397, 420
BssMI	GATC	3 cut(s)	234, 264, 343
BssNI	GRCGYC	1 cut(s)	393
BssT1I	CCWWGG	1 cut(s)	397
Bst2UI	CCWGG	1 cut(s)	350
Bst4CI	ACNGT	2 cut(s)	255, 473
Bst6I	CTCTTC	1 cut(s)	369
BstACI	GRCGYC	1 cut(s)	393
BstDEI	CTNAG	5 cut(s)	167, 457, 497, 526, 531
BstEII	GGTNACC	1 cut(s)	401
BstF5I	GGATG	2 cut(s)	416, 509
BstHHI	GCGC	1 cut(s)	434
BstKTI	GATC	3 cut(s)	237, 267, 346
BstMAI	GTCTC	1 cut(s)	353
BstMBI	GATC	3 cut(s)	234, 264, 343
BstMWI	GCNNNNNNNGC	2 cut(s)	127, 527
BstNI	CCWGG	1 cut(s)	350
BstPAI	GACNNNNGTC	1 cut(s)	198
BstPI	GGTNACC	1 cut(s)	401
BstSCI	CCNGG	2 cut(s)	101, 348
BstV1I	GCAGC	2 cut(s)	110, 505
BstV2I	GAAGAC	3 cut(s)	233, 274, 396
BstX2I	RGATCY	1 cut(s)	234
BstYI	RGATCY	1 cut(s)	234
BsuRI	GGCC	2 cut(s)	130, 261
BtsCI	GGATG	2 cut(s)	416, 509
BtsI	GCAGTG	1 cut(s)	115
BtsIMutI	CAGTG	2 cut(s)	115, 478
CfoI	GCGC	1 cut(s)	434
Csp6I	GTAC	1 cut(s)	208
CviAII	CATG	2 cut(s)	325, 383
CviQI	GTAC	1 cut(s)	208
DdeI	CTNAG	5 cut(s)	167, 457, 497, 526, 531
DpnI	GATC	3 cut(s)	236, 266, 345
DpnII	GATC	3 cut(s)	234, 264, 343
DrdI	GACNNNNNNGTC	1 cut(s)	278
DseDI	GACNNNNNNGTC	1 cut(s)	278
EaeI	YGGCCR	1 cut(s)	259
Eam1104I	CTCTTC	1 cut(s)	369
EarI	CTCTTC	1 cut(s)	369
Ecl136II	GAGCTC	1 cut(s)	496
Eco130I	CCWWGG	1 cut(s)	397
Eco24I	GRGCYC	2 cut(s)	186, 498
Eco53kI	GAGCTC	1 cut(s)	496
Eco57I	CTGAAG	1 cut(s)	161
Eco88I	CYCGRG	1 cut(s)	309
Eco91I	GGTNACC	1 cut(s)	401
EcoICRI	GAGCTC	1 cut(s)	496
EcoO65I	GGTNACC	1 cut(s)	401
EcoRII	CCWGG	1 cut(s)	348
EcoT14I	CCWWGG	1 cut(s)	397
EcoT38I	GRGCYC	2 cut(s)	186, 498
ErhI	CCWWGG	1 cut(s)	397
FaeI	CATG	2 cut(s)	328, 386
FaiI	YATR	4 cut(s)	192, 258, 326, 384
FalI	AAGNNNNNCTT	4 cut(s)	266, 298, 381, 413
FatI	CATG	2 cut(s)	324, 382
Fnu4HI	GCNGC	2 cut(s)	99, 519
FokI	GGATG	2 cut(s)	403, 496
FriOI	GRGCYC	2 cut(s)	186, 498
Fsp4HI	GCNGC	2 cut(s)	99, 519
GlaI	GCGC	1 cut(s)	433
GluI	GCNGC	2 cut(s)	99, 519
GsaI	CCCAGC	1 cut(s)	43
GsuI	CTGGAG	1 cut(s)	201
HaeIII	GGCC	2 cut(s)	130, 261
HapII	CCGG	4 cut(s)	102, 142, 450, 513
HhaI	GCGC	1 cut(s)	434
Hin1I	GRCGYC	1 cut(s)	393
Hin1II	CATG	2 cut(s)	328, 386
Hin6I	GCGC	1 cut(s)	432
HinP1I	GCGC	1 cut(s)	432
HinfI	GANTC	4 cut(s)	148, 171, 226, 361
HpaII	CCGG	4 cut(s)	102, 142, 450, 513
HphI	GGTGA	2 cut(s)	338, 398
Hpy166II	GTNNAC	1 cut(s)	147
Hpy188I	TCNGA	2 cut(s)	249, 421
Hpy188III	TCNNGA	5 cut(s)	218, 230, 295, 358, 513
Hpy8I	GTNNAC	1 cut(s)	147
HpyAV	CCTTC	2 cut(s)	185, 419
HpyCH4III	ACNGT	2 cut(s)	255, 473
HpyCH4IV	ACGT	2 cut(s)	279, 393
HpyCH4V	TGCA	2 cut(s)	19, 382
HpyF10VI	GCNNNNNNNGC	2 cut(s)	127, 527
HpyF3I	CTNAG	5 cut(s)	167, 457, 497, 526, 531
HpySE526I	ACGT	2 cut(s)	279, 393
Hsp92I	GRCGYC	1 cut(s)	393
Hsp92II	CATG	2 cut(s)	328, 386
HspAI	GCGC	1 cut(s)	432
Kpn2I	TCCGGA	1 cut(s)	512
Kzo9I	GATC	3 cut(s)	234, 264, 343
LmnI	GCTCC	3 cut(s)	28, 105, 515
Lsp1109I	GCAGC	2 cut(s)	110, 505
MaeII	ACGT	2 cut(s)	279, 393
MaeIII	GTNAC	4 cut(s)	200, 401, 440, 464
MalI	GATC	3 cut(s)	236, 266, 345
MboI	GATC	3 cut(s)	234, 264, 343
MboII	GAAGA	6 cut(s)	233, 235, 274, 356, 401, 421
MflI	RGATCY	1 cut(s)	234
MhlI	GDGCHC	2 cut(s)	186, 498
MlsI	TGGCCA	1 cut(s)	261
MluNI	TGGCCA	1 cut(s)	261
MlyI	GAGTC	2 cut(s)	142, 355
Mox20I	TGGCCA	1 cut(s)	261
MroI	TCCGGA	1 cut(s)	512
MroXI	GAANNNNTTC	1 cut(s)	281
MscI	TGGCCA	1 cut(s)	261
Msp20I	TGGCCA	1 cut(s)	261
MspI	CCGG	4 cut(s)	102, 142, 450, 513
MspR9I	CCNGG	2 cut(s)	103, 350
MvaI	CCWGG	1 cut(s)	350
MwoI	GCNNNNNNNGC	2 cut(s)	127, 527
NciI	CCSGG	1 cut(s)	103
NdeII	GATC	3 cut(s)	234, 264, 343
NlaIII	CATG	2 cut(s)	328, 386
NlaIV	GGNNCC	2 cut(s)	6, 293
NmuCI	GTSAC	1 cut(s)	200
PaeR7I	CTCGAG	1 cut(s)	309
PdmI	GAANNNNTTC	1 cut(s)	281
PfeI	GAWTC	2 cut(s)	171, 226
PkrI	GCNGC	2 cut(s)	100, 520
PleI	GAGTC	2 cut(s)	142, 355
PpsI	GAGTC	2 cut(s)	142, 355
PshAI	GACNNNNGTC	1 cut(s)	198
Psp124BI	GAGCTC	1 cut(s)	498
Psp6I	CCWGG	1 cut(s)	348
PspEI	GGTNACC	1 cut(s)	401
PspFI	CCCAGC	1 cut(s)	39
PspGI	CCWGG	1 cut(s)	348
PspN4I	GGNNCC	2 cut(s)	6, 293
PspXI	VCTCGAGB	1 cut(s)	309
PsuI	RGATCY	1 cut(s)	234
RsaI	GTAC	1 cut(s)	209
RsaNI	GTAC	1 cut(s)	208
SacI	GAGCTC	1 cut(s)	498
SatI	GCNGC	2 cut(s)	99, 519
Sau3AI	GATC	3 cut(s)	234, 264, 343
SchI	GAGTC	2 cut(s)	142, 355
ScrFI	CCNGG	2 cut(s)	103, 350
SduI	GDGCHC	2 cut(s)	186, 498
Sfr274I	CTCGAG	1 cut(s)	309
SlaI	CTCGAG	1 cut(s)	309
SmlI	CTYRAG	2 cut(s)	302, 309
SmoI	CTYRAG	2 cut(s)	302, 309
SsiI	CCGC	1 cut(s)	462
SstI	GAGCTC	1 cut(s)	498
StyD4I	CCNGG	2 cut(s)	101, 348
StyI	CCWWGG	1 cut(s)	397
TaaI	ACNGT	2 cut(s)	255, 473
TaiI	ACGT	2 cut(s)	282, 396
TaqI	TCGA	3 cut(s)	267, 310, 357
TfiI	GAWTC	2 cut(s)	171, 226
TscAI	CASTG	2 cut(s)	115, 478
TseFI	GTSAC	1 cut(s)	200
TseI	GCWGC	2 cut(s)	98, 518
Tsp45I	GTSAC	1 cut(s)	200
TspDTI	ATGAA	2 cut(s)	233, 313
TspRI	CASTG	2 cut(s)	115, 478
XhoI	CTCGAG	1 cut(s)	309
XmnI	GAANNNNTTC	1 cut(s)	281
ZraI	GACGTC	1 cut(s)	394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.