Homeodomain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Homeodomain | PF00046 | 40 - 98 | 4.6e-10 | Homeodomain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 254 |
| AccIII | TCCGGA | 1 cut(s) | 650 |
| AciI | CCGC | 2 cut(s) | 564, 600 |
| AclI | AACGTT | 1 cut(s) | 318 |
| AclWI | GGATC | 4 cut(s) | 340, 348, 361, 436 |
| AcsI | RAATTY | 1 cut(s) | 308 |
| AcuI | CTGAAG | 1 cut(s) | 137 |
| AfaI | GTAC | 1 cut(s) | 185 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 117, 521 |
| AgsI | TTSAA | 4 cut(s) | 11, 206, 298, 304 |
| AjnI | CCWGG | 1 cut(s) | 486 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 519, 551 |
| AluBI | AGCT | 4 cut(s) | 7, 570, 634, 668 |
| AluI | AGCT | 4 cut(s) | 7, 570, 634, 668 |
| Alw21I | GWGCWC | 2 cut(s) | 522, 636 |
| Alw26I | GTCTC | 2 cut(s) | 491, 644 |
| AlwI | GGATC | 4 cut(s) | 340, 348, 361, 436 |
| Ama87I | CYCGRG | 1 cut(s) | 285 |
| Aor13HI | TCCGGA | 1 cut(s) | 650 |
| AoxI | GGCC | 1 cut(s) | 104 |
| ApeKI | GCWGC | 1 cut(s) | 74 |
| ApoI | RAATTY | 1 cut(s) | 308 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 257 |
| AspS9I | GGNCC | 1 cut(s) | 381 |
| AsuC2I | CCSGG | 1 cut(s) | 79 |
| AsuHPI | GGTGA | 4 cut(s) | 431, 476, 536, 609 |
| AvaI | CYCGRG | 1 cut(s) | 285 |
| AvaII | GGWCC | 1 cut(s) | 381 |
| BamHI | GGATCC | 1 cut(s) | 353 |
| BanII | GRGCYC | 2 cut(s) | 162, 636 |
| BbsI | GAAGAC | 2 cut(s) | 250, 554 |
| Bbv12I | GWGCWC | 2 cut(s) | 522, 636 |
| BbvI | GCAGC | 1 cut(s) | 86 |
| BccI | CCATC | 4 cut(s) | 196, 368, 419, 655 |
| BciT130I | CCWGG | 1 cut(s) | 488 |
| BcnI | CCSGG | 1 cut(s) | 79 |
| BcoDI | GTCTC | 2 cut(s) | 491, 644 |
| BglII | AGATCT | 1 cut(s) | 210 |
| BisI | GCNGC | 1 cut(s) | 75 |
| BlsI | GCNGC | 1 cut(s) | 76 |
| Bme1390I | CCNGG | 2 cut(s) | 79, 488 |
| Bme18I | GGWCC | 1 cut(s) | 381 |
| BmeT110I | CYCGRG | 1 cut(s) | 285 |
| BmgT120I | GGNCC | 1 cut(s) | 381 |
| BmiI | GGNNCC | 4 cut(s) | 269, 355, 403, 655 |
| BmrFI | CCNGG | 2 cut(s) | 79, 488 |
| BpiI | GAAGAC | 2 cut(s) | 250, 554 |
| BpmI | CTGGAG | 1 cut(s) | 177 |
| Bpu10I | CCTNAGC | 2 cut(s) | 516, 595 |
| BpuEI | CTTGAG | 2 cut(s) | 263, 650 |
| BpuMI | CCSGG | 1 cut(s) | 79 |
| Bsa29I | ATCGAT | 1 cut(s) | 435 |
| BsaJI | CCNNGG | 3 cut(s) | 51, 445, 535 |
| BsaWI | WCCGGW | 2 cut(s) | 117, 650 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 117, 521 |
| Bse1I | ACTGG | 2 cut(s) | 412, 421 |
| BseAI | TCCGGA | 1 cut(s) | 650 |
| BseBI | CCWGG | 1 cut(s) | 488 |
| BseCI | ATCGAT | 1 cut(s) | 435 |
| BseDI | CCNNGG | 3 cut(s) | 51, 445, 535 |
| BseGI | GGATG | 2 cut(s) | 531, 647 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 117, 521 |
| BseMII | CTCAG | 3 cut(s) | 507, 609, 649 |
| BseNI | ACTGG | 2 cut(s) | 412, 421 |
| BseRI | GAGGAG | 3 cut(s) | 68, 489, 492 |
| BseXI | GCAGC | 1 cut(s) | 86 |
| BseYI | CCCAGC | 2 cut(s) | 15, 39 |
| BshFI | GGCC | 1 cut(s) | 106 |
| BshVI | ATCGAT | 1 cut(s) | 435 |
| BsiHKAI | GWGCWC | 2 cut(s) | 522, 636 |
| BsiHKCI | CYCGRG | 1 cut(s) | 285 |
| BsiSI | CCGG | 3 cut(s) | 78, 118, 651 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 117, 521 |
| BsmAI | GTCTC | 2 cut(s) | 491, 644 |
| BsnI | GGCC | 1 cut(s) | 106 |
| BsoBI | CYCGRG | 1 cut(s) | 285 |
| Bsp1286I | GDGCHC | 3 cut(s) | 162, 522, 636 |
| Bsp13I | TCCGGA | 1 cut(s) | 650 |
| Bsp143I | GATC | 9 cut(s) | 210, 240, 332, 340, 353, 388, 428, 436, 481 |
| BspACI | CCGC | 2 cut(s) | 564, 600 |
| BspANI | GGCC | 1 cut(s) | 106 |
| BspCNI | CTCAG | 3 cut(s) | 508, 608, 648 |
| BspDI | ATCGAT | 1 cut(s) | 435 |
| BspEI | TCCGGA | 1 cut(s) | 650 |
| BspLI | GGNNCC | 4 cut(s) | 269, 355, 403, 655 |
| BspPI | GGATC | 4 cut(s) | 340, 348, 361, 436 |
| BsrI | ACTGG | 2 cut(s) | 412, 421 |
| BssECI | CCNNGG | 3 cut(s) | 51, 445, 535 |
| BssMI | GATC | 9 cut(s) | 210, 240, 332, 340, 353, 388, 428, 436, 481 |
| BssT1I | CCWWGG | 2 cut(s) | 445, 535 |
| Bst2UI | CCWGG | 1 cut(s) | 488 |
| Bst4CI | ACNGT | 3 cut(s) | 231, 524, 611 |
| Bst6I | CTCTTC | 1 cut(s) | 507 |
| BstDEI | CTNAG | 5 cut(s) | 143, 516, 595, 635, 669 |
| BstEII | GGTNACC | 1 cut(s) | 539 |
| BstF5I | GGATG | 2 cut(s) | 531, 647 |
| BstKTI | GATC | 9 cut(s) | 213, 243, 335, 343, 356, 391, 431, 439, 484 |
| BstMAI | GTCTC | 2 cut(s) | 491, 644 |
| BstMBI | GATC | 9 cut(s) | 210, 240, 332, 340, 353, 388, 428, 436, 481 |
| BstNI | CCWGG | 1 cut(s) | 488 |
| BstPI | GGTNACC | 1 cut(s) | 539 |
| BstSCI | CCNGG | 2 cut(s) | 77, 486 |
| BstV1I | GCAGC | 1 cut(s) | 86 |
| BstV2I | GAAGAC | 2 cut(s) | 250, 554 |
| BstX2I | RGATCY | 3 cut(s) | 210, 332, 353 |
| BstYI | RGATCY | 3 cut(s) | 210, 332, 353 |
| Bsu15I | ATCGAT | 1 cut(s) | 435 |
| BsuRI | GGCC | 1 cut(s) | 106 |
| BsuTUI | ATCGAT | 1 cut(s) | 435 |
| BtsCI | GGATG | 2 cut(s) | 531, 647 |
| BtsIMutI | CAGTG | 3 cut(s) | 405, 616, 657 |
| Cfr13I | GGNCC | 1 cut(s) | 381 |
| ClaI | ATCGAT | 1 cut(s) | 435 |
| Csp6I | GTAC | 1 cut(s) | 184 |
| CviAII | CATG | 1 cut(s) | 463 |
| CviQI | GTAC | 1 cut(s) | 184 |
| DdeI | CTNAG | 5 cut(s) | 143, 516, 595, 635, 669 |
| DpnI | GATC | 9 cut(s) | 212, 242, 334, 342, 355, 390, 430, 438, 483 |
| DpnII | GATC | 9 cut(s) | 210, 240, 332, 340, 353, 388, 428, 436, 481 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 254 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 254 |
| Eam1104I | CTCTTC | 1 cut(s) | 507 |
| EarI | CTCTTC | 1 cut(s) | 507 |
| Ecl136II | GAGCTC | 1 cut(s) | 634 |
| Eco130I | CCWWGG | 2 cut(s) | 445, 535 |
| Eco24I | GRGCYC | 2 cut(s) | 162, 636 |
| Eco47I | GGWCC | 1 cut(s) | 381 |
| Eco53kI | GAGCTC | 1 cut(s) | 634 |
| Eco57I | CTGAAG | 1 cut(s) | 137 |
| Eco88I | CYCGRG | 1 cut(s) | 285 |
| Eco91I | GGTNACC | 1 cut(s) | 539 |
| EcoICRI | GAGCTC | 1 cut(s) | 634 |
| EcoO65I | GGTNACC | 1 cut(s) | 539 |
| EcoRII | CCWGG | 1 cut(s) | 486 |
| EcoT14I | CCWWGG | 2 cut(s) | 445, 535 |
| EcoT38I | GRGCYC | 2 cut(s) | 162, 636 |
| ErhI | CCWWGG | 2 cut(s) | 445, 535 |
| FaeI | CATG | 1 cut(s) | 466 |
| FaiI | YATR | 3 cut(s) | 168, 234, 464 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 242, 274 |
| FatI | CATG | 1 cut(s) | 462 |
| Fnu4HI | GCNGC | 1 cut(s) | 75 |
| FokI | GGATG | 2 cut(s) | 518, 634 |
| FriOI | GRGCYC | 2 cut(s) | 162, 636 |
| Fsp4HI | GCNGC | 1 cut(s) | 75 |
| GluI | GCNGC | 1 cut(s) | 75 |
| GsaI | CCCAGC | 2 cut(s) | 19, 43 |
| GsuI | CTGGAG | 1 cut(s) | 177 |
| HaeIII | GGCC | 1 cut(s) | 106 |
| HapII | CCGG | 3 cut(s) | 78, 118, 651 |
| Hin1II | CATG | 1 cut(s) | 466 |
| HinfI | GANTC | 4 cut(s) | 124, 147, 202, 499 |
| HpaII | CCGG | 3 cut(s) | 78, 118, 651 |
| HphI | GGTGA | 4 cut(s) | 431, 476, 536, 609 |
| Hpy166II | GTNNAC | 1 cut(s) | 123 |
| Hpy188I | TCNGA | 3 cut(s) | 225, 315, 559 |
| Hpy188III | TCNNGA | 8 cut(s) | 194, 206, 271, 287, 338, 496, 629, 651 |
| Hpy8I | GTNNAC | 1 cut(s) | 123 |
| Hpy99I | CGWCG | 1 cut(s) | 474 |
| HpyAV | CCTTC | 2 cut(s) | 161, 298 |
| HpyCH4III | ACNGT | 3 cut(s) | 231, 524, 611 |
| HpyCH4IV | ACGT | 2 cut(s) | 255, 318 |
| HpyF3I | CTNAG | 5 cut(s) | 143, 516, 595, 635, 669 |
| HpySE526I | ACGT | 2 cut(s) | 255, 318 |
| Hsp92II | CATG | 1 cut(s) | 466 |
| Kpn2I | TCCGGA | 1 cut(s) | 650 |
| Kzo9I | GATC | 9 cut(s) | 210, 240, 332, 340, 353, 388, 428, 436, 481 |
| LmnI | GCTCC | 2 cut(s) | 4, 653 |
| Lsp1109I | GCAGC | 1 cut(s) | 86 |
| MaeII | ACGT | 2 cut(s) | 255, 318 |
| MaeIII | GTNAC | 5 cut(s) | 176, 450, 539, 578, 602 |
| MalI | GATC | 9 cut(s) | 212, 242, 334, 342, 355, 390, 430, 438, 483 |
| MboI | GATC | 9 cut(s) | 210, 240, 332, 340, 353, 388, 428, 436, 481 |
| MboII | GAAGA | 3 cut(s) | 250, 494, 559 |
| MfeI | CAATTG | 1 cut(s) | 23 |
| MflI | RGATCY | 3 cut(s) | 210, 332, 353 |
| MhlI | GDGCHC | 3 cut(s) | 162, 522, 636 |
| MluCI | AATT | 3 cut(s) | 23, 308, 346 |
| MlyI | GAGTC | 2 cut(s) | 118, 493 |
| MroI | TCCGGA | 1 cut(s) | 650 |
| MroXI | GAANNNNTTC | 1 cut(s) | 257 |
| MspI | CCGG | 3 cut(s) | 78, 118, 651 |
| MspR9I | CCNGG | 2 cut(s) | 79, 488 |
| MunI | CAATTG | 1 cut(s) | 23 |
| MvaI | CCWGG | 1 cut(s) | 488 |
| NciI | CCSGG | 1 cut(s) | 79 |
| NdeII | GATC | 9 cut(s) | 210, 240, 332, 340, 353, 388, 428, 436, 481 |
| NlaIII | CATG | 1 cut(s) | 466 |
| NlaIV | GGNNCC | 4 cut(s) | 269, 355, 403, 655 |
| NmuCI | GTSAC | 1 cut(s) | 450 |
| PaeR7I | CTCGAG | 1 cut(s) | 285 |
| PdmI | GAANNNNTTC | 1 cut(s) | 257 |
| PfeI | GAWTC | 2 cut(s) | 147, 202 |
| PkrI | GCNGC | 1 cut(s) | 76 |
| PleI | GAGTC | 2 cut(s) | 118, 493 |
| PpsI | GAGTC | 2 cut(s) | 118, 493 |
| Psp124BI | GAGCTC | 1 cut(s) | 636 |
| Psp1406I | AACGTT | 1 cut(s) | 318 |
| Psp6I | CCWGG | 1 cut(s) | 486 |
| PspEI | GGTNACC | 1 cut(s) | 539 |
| PspFI | CCCAGC | 2 cut(s) | 15, 39 |
| PspGI | CCWGG | 1 cut(s) | 486 |
| PspN4I | GGNNCC | 4 cut(s) | 269, 355, 403, 655 |
| PspPI | GGNCC | 1 cut(s) | 381 |
| PsuI | RGATCY | 3 cut(s) | 210, 332, 353 |
| RsaI | GTAC | 1 cut(s) | 185 |
| RsaNI | GTAC | 1 cut(s) | 184 |
| SacI | GAGCTC | 1 cut(s) | 636 |
| SatI | GCNGC | 1 cut(s) | 75 |
| Sau3AI | GATC | 9 cut(s) | 210, 240, 332, 340, 353, 388, 428, 436, 481 |
| Sau96I | GGNCC | 1 cut(s) | 381 |
| SchI | GAGTC | 2 cut(s) | 118, 493 |
| ScrFI | CCNGG | 2 cut(s) | 79, 488 |
| SduI | GDGCHC | 3 cut(s) | 162, 522, 636 |
| Sfr274I | CTCGAG | 1 cut(s) | 285 |
| SinI | GGWCC | 1 cut(s) | 381 |
| SlaI | CTCGAG | 1 cut(s) | 285 |
| SmlI | CTYRAG | 3 cut(s) | 278, 285, 629 |
| SmoI | CTYRAG | 3 cut(s) | 278, 285, 629 |
| Sse9I | AATT | 3 cut(s) | 23, 308, 346 |
| SsiI | CCGC | 2 cut(s) | 564, 600 |
| SstI | GAGCTC | 1 cut(s) | 636 |
| StyD4I | CCNGG | 2 cut(s) | 77, 486 |
| StyI | CCWWGG | 2 cut(s) | 445, 535 |
| TaaI | ACNGT | 3 cut(s) | 231, 524, 611 |
| TaiI | ACGT | 2 cut(s) | 258, 321 |
| TaqI | TCGA | 5 cut(s) | 243, 286, 339, 435, 495 |
| TasI | AATT | 3 cut(s) | 23, 308, 346 |
| TfiI | GAWTC | 2 cut(s) | 147, 202 |
| TscAI | CASTG | 3 cut(s) | 412, 616, 664 |
| TseFI | GTSAC | 1 cut(s) | 450 |
| TseI | GCWGC | 1 cut(s) | 74 |
| Tsp45I | GTSAC | 1 cut(s) | 450 |
| TspDTI | ATGAA | 1 cut(s) | 451 |
| TspRI | CASTG | 3 cut(s) | 412, 616, 664 |
| VpaK11BI | GGWCC | 1 cut(s) | 381 |
| XapI | RAATTY | 1 cut(s) | 308 |
| XhoI | CTCGAG | 1 cut(s) | 285 |
| XmnI | GAANNNNTTC | 1 cut(s) | 257 |