RchiOBHm_Chr1g0379461

Homeodomain

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
65492256 .. 65492927
672 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ60278

Sequence Viewer

Length: 672 bp
ATGGAGCTTCAAACCCAGCAACAATTGGAACTACAAGCCCAGCAACCAACCGAGGAGGGAGGAAGCAACCAAGCAGCCGGGAGTAGTGCCAACACACCTATCAGGCCGACCACTATCCGGTGGACTCCTACACCAGCCCAACTAAGAATCCTTCAGGGGCTCTACTATGACAAGGGTTACAAGTACCCATCTCCAGAGCAGATTCAAGAGATCTGTCTTTATCTGAAACCGTATGGGGAGATCGAGGACAAGAACGTCTTCTTTTGGTTCCAGAACCTCAAGGCTCGAGAGAGGTTGAAGTTGAAGGAATTTCGGAACGTTCGGGTTGGTGGATCTCTCGATCTCAATTTTGGATCCACAAGTTCTACTGATGATGGTAGGTCCATTGATCTCAACTTCGGTTCCACTGGTTCTACTGGTGATGATGGATCAATCGATCTAACCCTTGGGTCACAATCATTCATGGAACGACGAGGAGGAGATCACCAGGAGGTCGAGACTCTTCCTCTGTTCCCTGAGCACGGTGAAAACATCCTTGGTAACCCGAAGACTACATCAGAGGGCGGTAGCTCATTTGGTTACTATTTCGGTGGCTCAGGCGGTTACAACAGTGGCTCACCTGTTTCTCTTGAGCTCAGTCTCAATCCATCCGGAGCCACTGATTTAGCTTAG

Protein Analysis

223

Amino Acids

24.36

Weight (kDa)

4.71

Isoelectric Point (pI)

52.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 40 - 98 4.6e-10 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000180)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr0c19g0499991 RchiOBHm_Chr0c19g0500021 RchiOBHm_Chr0c19g0500131 RchiOBHm_Chr0c31g0501321 RchiOBHm_Chr0c31g0501441 RchiOBHm_Chr1g0365611 RchiOBHm_Chr1g0366061 RchiOBHm_Chr1g0367951 RchiOBHm_Chr1g0369471 RchiOBHm_Chr1g0377271 RchiOBHm_Chr1g0379021 RchiOBHm_Chr1g0379461 RchiOBHm_Chr1g0381431 RchiOBHm_Chr1g0383551 RchiOBHm_Chr1g0383621 RchiOBHm_Chr2g0120951 RchiOBHm_Chr2g0121321 RchiOBHm_Chr2g0121381 RchiOBHm_Chr2g0121801 RchiOBHm_Chr2g0121861 RchiOBHm_Chr2g0122211 RchiOBHm_Chr2g0122471 RchiOBHm_Chr2g0122511 RchiOBHm_Chr2g0122751 RchiOBHm_Chr2g0123361 RchiOBHm_Chr2g0124071 RchiOBHm_Chr2g0124341 RchiOBHm_Chr2g0124361 RchiOBHm_Chr2g0124511 RchiOBHm_Chr2g0124641 RchiOBHm_Chr2g0125051 RchiOBHm_Chr2g0125111 RchiOBHm_Chr2g0125641 RchiOBHm_Chr2g0125871 RchiOBHm_Chr2g0125901 RchiOBHm_Chr2g0126011 RchiOBHm_Chr2g0126291 RchiOBHm_Chr2g0126341 RchiOBHm_Chr2g0126611 RchiOBHm_Chr2g0126671 RchiOBHm_Chr2g0126701 RchiOBHm_Chr2g0127021 RchiOBHm_Chr2g0127071 RchiOBHm_Chr2g0127361 RchiOBHm_Chr2g0127691 RchiOBHm_Chr2g0128041 RchiOBHm_Chr2g0128051 RchiOBHm_Chr2g0128061 RchiOBHm_Chr2g0128141 RchiOBHm_Chr2g0128171 RchiOBHm_Chr2g0128181 RchiOBHm_Chr2g0128551 RchiOBHm_Chr2g0128991 RchiOBHm_Chr2g0130061 RchiOBHm_Chr2g0130391 RchiOBHm_Chr2g0130631 RchiOBHm_Chr2g0130921 RchiOBHm_Chr2g0132731 RchiOBHm_Chr2g0133461 RchiOBHm_Chr2g0133921 RchiOBHm_Chr2g0134031 RchiOBHm_Chr2g0134281 RchiOBHm_Chr2g0134351 RchiOBHm_Chr2g0135501 RchiOBHm_Chr2g0135821 RchiOBHm_Chr2g0135931 RchiOBHm_Chr2g0137501 RchiOBHm_Chr2g0139141 RchiOBHm_Chr2g0139511 RchiOBHm_Chr2g0142411 RchiOBHm_Chr2g0143261 RchiOBHm_Chr2g0144171 RchiOBHm_Chr2g0144741 RchiOBHm_Chr2g0144841 RchiOBHm_Chr2g0145021 RchiOBHm_Chr2g0145831 RchiOBHm_Chr2g0145881 RchiOBHm_Chr2g0146081 RchiOBHm_Chr2g0146141 RchiOBHm_Chr2g0146671 RchiOBHm_Chr2g0149001 RchiOBHm_Chr2g0151811 RchiOBHm_Chr2g0151821 RchiOBHm_Chr2g0151831 RchiOBHm_Chr2g0152051 RchiOBHm_Chr2g0154791 RchiOBHm_Chr2g0155541 RchiOBHm_Chr2g0160791 RchiOBHm_Chr2g0161631 RchiOBHm_Chr2g0162151 RchiOBHm_Chr2g0162751 RchiOBHm_Chr2g0166561 RchiOBHm_Chr2g0166751 RchiOBHm_Chr2g0168891 RchiOBHm_Chr2g0170211 RchiOBHm_Chr2g0170781 RchiOBHm_Chr2g0172831 RchiOBHm_Chr2g0174791 RchiOBHm_Chr3g0448081 RchiOBHm_Chr3g0449761 RchiOBHm_Chr3g0453291 RchiOBHm_Chr3g0456271 RchiOBHm_Chr3g0456461 RchiOBHm_Chr3g0458351 RchiOBHm_Chr3g0461411 RchiOBHm_Chr3g0461511 RchiOBHm_Chr3g0463871 RchiOBHm_Chr3g0467841 RchiOBHm_Chr3g0470081 RchiOBHm_Chr3g0470571 RchiOBHm_Chr7g0187061 RchiOBHm_Chr7g0187461 RchiOBHm_Chr7g0187681 RchiOBHm_Chr7g0189901 RchiOBHm_Chr7g0190271 RchiOBHm_Chr7g0193451 RchiOBHm_Chr7g0194081 RchiOBHm_Chr7g0195771 RchiOBHm_Chr7g0196301 RchiOBHm_Chr7g0196911
rosa_multiflora Rmu_sc0000236.1_g000047 Rmu_sc0000284.1_g000007 Rmu_sc0000288.1_g000006 Rmu_sc0000507.1_g000017 Rmu_sc0000580.1_g000015 Rmu_sc0000663.1_g000011 Rmu_sc0000675.1_g000024 Rmu_sc0000693.1_g000072 Rmu_sc0000779.1_g000005 Rmu_sc0000851.1_g000015 Rmu_sc0000962.1_g000001 Rmu_sc0001493.1_g000055 Rmu_sc0001669.1_g000025 Rmu_sc0001891.1_g000051 Rmu_sc0001926.1_g000007 Rmu_sc0002082.1_g000025 Rmu_sc0002141.1_g000001 Rmu_sc0002141.1_g000004 Rmu_sc0002414.1_g000012 Rmu_sc0002557.1_g000022 Rmu_sc0002709.1_g000038 Rmu_sc0002897.1_g000004 Rmu_sc0002934.1_g000055 Rmu_sc0003692.1_g000017 Rmu_sc0004283.1_g000068 Rmu_sc0004598.1_g000010 Rmu_sc0004614.1_g000004 Rmu_sc0004805.1_g000006 Rmu_sc0005142.1_g000041 Rmu_sc0005777.1_g000001 Rmu_sc0006420.1_g000019 Rmu_sc0006803.1_g000016 Rmu_sc0007034.1_g000015 Rmu_sc0008079.1_g000017 Rmu_sc0008148.1_g000040 Rmu_sc0008608.1_g000007 Rmu_sc0008675.1_g000001 Rmu_sc0009663.1_g000001 Rmu_sc0010188.1_g000003 Rmu_sc0010739.1_g000005 Rmu_sc0016265.1_g000001 Rmu_sc0031757.1_g000001 Rmu_ssc0000087.1_g000024 Rmu_ssc0000438.1_g000029
rosa_roxburghii Rroxscaffold_1G00003350
rosa_rugosa Rorug03G0248400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 254
AccIII TCCGGA 1 cut(s) 650
AciI CCGC 2 cut(s) 564, 600
AclI AACGTT 1 cut(s) 318
AclWI GGATC 4 cut(s) 340, 348, 361, 436
AcsI RAATTY 1 cut(s) 308
AcuI CTGAAG 1 cut(s) 137
AfaI GTAC 1 cut(s) 185
AfiI CCNNNNNNNGG 2 cut(s) 117, 521
AgsI TTSAA 4 cut(s) 11, 206, 298, 304
AjnI CCWGG 1 cut(s) 486
AjuI GAANNNNNNNTTGG 2 cut(s) 519, 551
AluBI AGCT 4 cut(s) 7, 570, 634, 668
AluI AGCT 4 cut(s) 7, 570, 634, 668
Alw21I GWGCWC 2 cut(s) 522, 636
Alw26I GTCTC 2 cut(s) 491, 644
AlwI GGATC 4 cut(s) 340, 348, 361, 436
Ama87I CYCGRG 1 cut(s) 285
Aor13HI TCCGGA 1 cut(s) 650
AoxI GGCC 1 cut(s) 104
ApeKI GCWGC 1 cut(s) 74
ApoI RAATTY 1 cut(s) 308
Asp700I GAANNNNTTC 1 cut(s) 257
AspS9I GGNCC 1 cut(s) 381
AsuC2I CCSGG 1 cut(s) 79
AsuHPI GGTGA 4 cut(s) 431, 476, 536, 609
AvaI CYCGRG 1 cut(s) 285
AvaII GGWCC 1 cut(s) 381
BamHI GGATCC 1 cut(s) 353
BanII GRGCYC 2 cut(s) 162, 636
BbsI GAAGAC 2 cut(s) 250, 554
Bbv12I GWGCWC 2 cut(s) 522, 636
BbvI GCAGC 1 cut(s) 86
BccI CCATC 4 cut(s) 196, 368, 419, 655
BciT130I CCWGG 1 cut(s) 488
BcnI CCSGG 1 cut(s) 79
BcoDI GTCTC 2 cut(s) 491, 644
BglII AGATCT 1 cut(s) 210
BisI GCNGC 1 cut(s) 75
BlsI GCNGC 1 cut(s) 76
Bme1390I CCNGG 2 cut(s) 79, 488
Bme18I GGWCC 1 cut(s) 381
BmeT110I CYCGRG 1 cut(s) 285
BmgT120I GGNCC 1 cut(s) 381
BmiI GGNNCC 4 cut(s) 269, 355, 403, 655
BmrFI CCNGG 2 cut(s) 79, 488
BpiI GAAGAC 2 cut(s) 250, 554
BpmI CTGGAG 1 cut(s) 177
Bpu10I CCTNAGC 2 cut(s) 516, 595
BpuEI CTTGAG 2 cut(s) 263, 650
BpuMI CCSGG 1 cut(s) 79
Bsa29I ATCGAT 1 cut(s) 435
BsaJI CCNNGG 3 cut(s) 51, 445, 535
BsaWI WCCGGW 2 cut(s) 117, 650
Bsc4I CCNNNNNNNGG 2 cut(s) 117, 521
Bse1I ACTGG 2 cut(s) 412, 421
BseAI TCCGGA 1 cut(s) 650
BseBI CCWGG 1 cut(s) 488
BseCI ATCGAT 1 cut(s) 435
BseDI CCNNGG 3 cut(s) 51, 445, 535
BseGI GGATG 2 cut(s) 531, 647
BseLI CCNNNNNNNGG 2 cut(s) 117, 521
BseMII CTCAG 3 cut(s) 507, 609, 649
BseNI ACTGG 2 cut(s) 412, 421
BseRI GAGGAG 3 cut(s) 68, 489, 492
BseXI GCAGC 1 cut(s) 86
BseYI CCCAGC 2 cut(s) 15, 39
BshFI GGCC 1 cut(s) 106
BshVI ATCGAT 1 cut(s) 435
BsiHKAI GWGCWC 2 cut(s) 522, 636
BsiHKCI CYCGRG 1 cut(s) 285
BsiSI CCGG 3 cut(s) 78, 118, 651
BslI CCNNNNNNNGG 2 cut(s) 117, 521
BsmAI GTCTC 2 cut(s) 491, 644
BsnI GGCC 1 cut(s) 106
BsoBI CYCGRG 1 cut(s) 285
Bsp1286I GDGCHC 3 cut(s) 162, 522, 636
Bsp13I TCCGGA 1 cut(s) 650
Bsp143I GATC 9 cut(s) 210, 240, 332, 340, 353, 388, 428, 436, 481
BspACI CCGC 2 cut(s) 564, 600
BspANI GGCC 1 cut(s) 106
BspCNI CTCAG 3 cut(s) 508, 608, 648
BspDI ATCGAT 1 cut(s) 435
BspEI TCCGGA 1 cut(s) 650
BspLI GGNNCC 4 cut(s) 269, 355, 403, 655
BspPI GGATC 4 cut(s) 340, 348, 361, 436
BsrI ACTGG 2 cut(s) 412, 421
BssECI CCNNGG 3 cut(s) 51, 445, 535
BssMI GATC 9 cut(s) 210, 240, 332, 340, 353, 388, 428, 436, 481
BssT1I CCWWGG 2 cut(s) 445, 535
Bst2UI CCWGG 1 cut(s) 488
Bst4CI ACNGT 3 cut(s) 231, 524, 611
Bst6I CTCTTC 1 cut(s) 507
BstDEI CTNAG 5 cut(s) 143, 516, 595, 635, 669
BstEII GGTNACC 1 cut(s) 539
BstF5I GGATG 2 cut(s) 531, 647
BstKTI GATC 9 cut(s) 213, 243, 335, 343, 356, 391, 431, 439, 484
BstMAI GTCTC 2 cut(s) 491, 644
BstMBI GATC 9 cut(s) 210, 240, 332, 340, 353, 388, 428, 436, 481
BstNI CCWGG 1 cut(s) 488
BstPI GGTNACC 1 cut(s) 539
BstSCI CCNGG 2 cut(s) 77, 486
BstV1I GCAGC 1 cut(s) 86
BstV2I GAAGAC 2 cut(s) 250, 554
BstX2I RGATCY 3 cut(s) 210, 332, 353
BstYI RGATCY 3 cut(s) 210, 332, 353
Bsu15I ATCGAT 1 cut(s) 435
BsuRI GGCC 1 cut(s) 106
BsuTUI ATCGAT 1 cut(s) 435
BtsCI GGATG 2 cut(s) 531, 647
BtsIMutI CAGTG 3 cut(s) 405, 616, 657
Cfr13I GGNCC 1 cut(s) 381
ClaI ATCGAT 1 cut(s) 435
Csp6I GTAC 1 cut(s) 184
CviAII CATG 1 cut(s) 463
CviQI GTAC 1 cut(s) 184
DdeI CTNAG 5 cut(s) 143, 516, 595, 635, 669
DpnI GATC 9 cut(s) 212, 242, 334, 342, 355, 390, 430, 438, 483
DpnII GATC 9 cut(s) 210, 240, 332, 340, 353, 388, 428, 436, 481
DrdI GACNNNNNNGTC 1 cut(s) 254
DseDI GACNNNNNNGTC 1 cut(s) 254
Eam1104I CTCTTC 1 cut(s) 507
EarI CTCTTC 1 cut(s) 507
Ecl136II GAGCTC 1 cut(s) 634
Eco130I CCWWGG 2 cut(s) 445, 535
Eco24I GRGCYC 2 cut(s) 162, 636
Eco47I GGWCC 1 cut(s) 381
Eco53kI GAGCTC 1 cut(s) 634
Eco57I CTGAAG 1 cut(s) 137
Eco88I CYCGRG 1 cut(s) 285
Eco91I GGTNACC 1 cut(s) 539
EcoICRI GAGCTC 1 cut(s) 634
EcoO65I GGTNACC 1 cut(s) 539
EcoRII CCWGG 1 cut(s) 486
EcoT14I CCWWGG 2 cut(s) 445, 535
EcoT38I GRGCYC 2 cut(s) 162, 636
ErhI CCWWGG 2 cut(s) 445, 535
FaeI CATG 1 cut(s) 466
FaiI YATR 3 cut(s) 168, 234, 464
FalI AAGNNNNNCTT 2 cut(s) 242, 274
FatI CATG 1 cut(s) 462
Fnu4HI GCNGC 1 cut(s) 75
FokI GGATG 2 cut(s) 518, 634
FriOI GRGCYC 2 cut(s) 162, 636
Fsp4HI GCNGC 1 cut(s) 75
GluI GCNGC 1 cut(s) 75
GsaI CCCAGC 2 cut(s) 19, 43
GsuI CTGGAG 1 cut(s) 177
HaeIII GGCC 1 cut(s) 106
HapII CCGG 3 cut(s) 78, 118, 651
Hin1II CATG 1 cut(s) 466
HinfI GANTC 4 cut(s) 124, 147, 202, 499
HpaII CCGG 3 cut(s) 78, 118, 651
HphI GGTGA 4 cut(s) 431, 476, 536, 609
Hpy166II GTNNAC 1 cut(s) 123
Hpy188I TCNGA 3 cut(s) 225, 315, 559
Hpy188III TCNNGA 8 cut(s) 194, 206, 271, 287, 338, 496, 629, 651
Hpy8I GTNNAC 1 cut(s) 123
Hpy99I CGWCG 1 cut(s) 474
HpyAV CCTTC 2 cut(s) 161, 298
HpyCH4III ACNGT 3 cut(s) 231, 524, 611
HpyCH4IV ACGT 2 cut(s) 255, 318
HpyF3I CTNAG 5 cut(s) 143, 516, 595, 635, 669
HpySE526I ACGT 2 cut(s) 255, 318
Hsp92II CATG 1 cut(s) 466
Kpn2I TCCGGA 1 cut(s) 650
Kzo9I GATC 9 cut(s) 210, 240, 332, 340, 353, 388, 428, 436, 481
LmnI GCTCC 2 cut(s) 4, 653
Lsp1109I GCAGC 1 cut(s) 86
MaeII ACGT 2 cut(s) 255, 318
MaeIII GTNAC 5 cut(s) 176, 450, 539, 578, 602
MalI GATC 9 cut(s) 212, 242, 334, 342, 355, 390, 430, 438, 483
MboI GATC 9 cut(s) 210, 240, 332, 340, 353, 388, 428, 436, 481
MboII GAAGA 3 cut(s) 250, 494, 559
MfeI CAATTG 1 cut(s) 23
MflI RGATCY 3 cut(s) 210, 332, 353
MhlI GDGCHC 3 cut(s) 162, 522, 636
MluCI AATT 3 cut(s) 23, 308, 346
MlyI GAGTC 2 cut(s) 118, 493
MroI TCCGGA 1 cut(s) 650
MroXI GAANNNNTTC 1 cut(s) 257
MspI CCGG 3 cut(s) 78, 118, 651
MspR9I CCNGG 2 cut(s) 79, 488
MunI CAATTG 1 cut(s) 23
MvaI CCWGG 1 cut(s) 488
NciI CCSGG 1 cut(s) 79
NdeII GATC 9 cut(s) 210, 240, 332, 340, 353, 388, 428, 436, 481
NlaIII CATG 1 cut(s) 466
NlaIV GGNNCC 4 cut(s) 269, 355, 403, 655
NmuCI GTSAC 1 cut(s) 450
PaeR7I CTCGAG 1 cut(s) 285
PdmI GAANNNNTTC 1 cut(s) 257
PfeI GAWTC 2 cut(s) 147, 202
PkrI GCNGC 1 cut(s) 76
PleI GAGTC 2 cut(s) 118, 493
PpsI GAGTC 2 cut(s) 118, 493
Psp124BI GAGCTC 1 cut(s) 636
Psp1406I AACGTT 1 cut(s) 318
Psp6I CCWGG 1 cut(s) 486
PspEI GGTNACC 1 cut(s) 539
PspFI CCCAGC 2 cut(s) 15, 39
PspGI CCWGG 1 cut(s) 486
PspN4I GGNNCC 4 cut(s) 269, 355, 403, 655
PspPI GGNCC 1 cut(s) 381
PsuI RGATCY 3 cut(s) 210, 332, 353
RsaI GTAC 1 cut(s) 185
RsaNI GTAC 1 cut(s) 184
SacI GAGCTC 1 cut(s) 636
SatI GCNGC 1 cut(s) 75
Sau3AI GATC 9 cut(s) 210, 240, 332, 340, 353, 388, 428, 436, 481
Sau96I GGNCC 1 cut(s) 381
SchI GAGTC 2 cut(s) 118, 493
ScrFI CCNGG 2 cut(s) 79, 488
SduI GDGCHC 3 cut(s) 162, 522, 636
Sfr274I CTCGAG 1 cut(s) 285
SinI GGWCC 1 cut(s) 381
SlaI CTCGAG 1 cut(s) 285
SmlI CTYRAG 3 cut(s) 278, 285, 629
SmoI CTYRAG 3 cut(s) 278, 285, 629
Sse9I AATT 3 cut(s) 23, 308, 346
SsiI CCGC 2 cut(s) 564, 600
SstI GAGCTC 1 cut(s) 636
StyD4I CCNGG 2 cut(s) 77, 486
StyI CCWWGG 2 cut(s) 445, 535
TaaI ACNGT 3 cut(s) 231, 524, 611
TaiI ACGT 2 cut(s) 258, 321
TaqI TCGA 5 cut(s) 243, 286, 339, 435, 495
TasI AATT 3 cut(s) 23, 308, 346
TfiI GAWTC 2 cut(s) 147, 202
TscAI CASTG 3 cut(s) 412, 616, 664
TseFI GTSAC 1 cut(s) 450
TseI GCWGC 1 cut(s) 74
Tsp45I GTSAC 1 cut(s) 450
TspDTI ATGAA 1 cut(s) 451
TspRI CASTG 3 cut(s) 412, 616, 664
VpaK11BI GGWCC 1 cut(s) 381
XapI RAATTY 1 cut(s) 308
XhoI CTCGAG 1 cut(s) 285
XmnI GAANNNNTTC 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.