Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002141.1

Orthogroup ID

OG0000180

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 596

Gene Structure 596 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002141.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 512 bp

agcagattcaaaagatctgccttcatctgcaacagtatgggcagatcgaggataagaacgtcttcttttggttccagaacctcaaggctcgagagaggcagaagataaggttaattcagaacgttcgggttggtggatctctcgatctcaattttggatccactagttctactgatgatggtgggtccattgatctaaactttgggtcatgggtcggctatagagttgacccatattcctcctcacccttcaaccctaatactagcactacctcctttggcacagaaggaggacacactttcatggaacaacgaggaggaaatcatcaggaagttgaaactcttcctctgttccccatgcactgtgaggacgtccttggagacccgaagactacttccgagggaggtggcgcatatggctactattccgatggttcgggcgattacaacggtgactctcacgtttctcttgagctcagcctcaatcattccagagctgctgacttggcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

169

Amino Acids

18.62

Weight (kDa)

4.95

Isoelectric Point (pI)

31.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000180)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c19g0499991 RchiOBHm_Chr0c19g0500021 RchiOBHm_Chr0c19g0500131 RchiOBHm_Chr0c31g0501321 RchiOBHm_Chr0c31g0501441 RchiOBHm_Chr1g0365611 RchiOBHm_Chr1g0366061 RchiOBHm_Chr1g0367951 RchiOBHm_Chr1g0369471 RchiOBHm_Chr1g0377271 RchiOBHm_Chr1g0379021 RchiOBHm_Chr1g0379461 RchiOBHm_Chr1g0381431 RchiOBHm_Chr1g0383551 RchiOBHm_Chr1g0383621 RchiOBHm_Chr2g0120951 RchiOBHm_Chr2g0121321 RchiOBHm_Chr2g0121381 RchiOBHm_Chr2g0121801 RchiOBHm_Chr2g0121861 RchiOBHm_Chr2g0122211 RchiOBHm_Chr2g0122471 RchiOBHm_Chr2g0122511 RchiOBHm_Chr2g0122751 RchiOBHm_Chr2g0123361 RchiOBHm_Chr2g0124071 RchiOBHm_Chr2g0124341 RchiOBHm_Chr2g0124361 RchiOBHm_Chr2g0124511 RchiOBHm_Chr2g0124641 RchiOBHm_Chr2g0125051 RchiOBHm_Chr2g0125111 RchiOBHm_Chr2g0125641 RchiOBHm_Chr2g0125871 RchiOBHm_Chr2g0125901 RchiOBHm_Chr2g0126011 RchiOBHm_Chr2g0126291 RchiOBHm_Chr2g0126341 RchiOBHm_Chr2g0126611 RchiOBHm_Chr2g0126671 RchiOBHm_Chr2g0126701 RchiOBHm_Chr2g0127021 RchiOBHm_Chr2g0127071 RchiOBHm_Chr2g0127361 RchiOBHm_Chr2g0127691 RchiOBHm_Chr2g0128041 RchiOBHm_Chr2g0128051 RchiOBHm_Chr2g0128061 RchiOBHm_Chr2g0128141 RchiOBHm_Chr2g0128171 RchiOBHm_Chr2g0128181 RchiOBHm_Chr2g0128551 RchiOBHm_Chr2g0128991 RchiOBHm_Chr2g0130061 RchiOBHm_Chr2g0130391 RchiOBHm_Chr2g0130631 RchiOBHm_Chr2g0130921 RchiOBHm_Chr2g0132731 RchiOBHm_Chr2g0133461 RchiOBHm_Chr2g0133921 RchiOBHm_Chr2g0134031 RchiOBHm_Chr2g0134281 RchiOBHm_Chr2g0134351 RchiOBHm_Chr2g0135501 RchiOBHm_Chr2g0135821 RchiOBHm_Chr2g0135931 RchiOBHm_Chr2g0137501 RchiOBHm_Chr2g0139141 RchiOBHm_Chr2g0139511 RchiOBHm_Chr2g0142411 RchiOBHm_Chr2g0143261 RchiOBHm_Chr2g0144171 RchiOBHm_Chr2g0144741 RchiOBHm_Chr2g0144841 RchiOBHm_Chr2g0145021 RchiOBHm_Chr2g0145831 RchiOBHm_Chr2g0145881 RchiOBHm_Chr2g0146081 RchiOBHm_Chr2g0146141 RchiOBHm_Chr2g0146671 RchiOBHm_Chr2g0149001 RchiOBHm_Chr2g0151811 RchiOBHm_Chr2g0151821 RchiOBHm_Chr2g0151831 RchiOBHm_Chr2g0152051 RchiOBHm_Chr2g0154791 RchiOBHm_Chr2g0155541 RchiOBHm_Chr2g0160791 RchiOBHm_Chr2g0161631 RchiOBHm_Chr2g0162151 RchiOBHm_Chr2g0162751 RchiOBHm_Chr2g0166561 RchiOBHm_Chr2g0166751 RchiOBHm_Chr2g0168891 RchiOBHm_Chr2g0170211 RchiOBHm_Chr2g0170781 RchiOBHm_Chr2g0172831 RchiOBHm_Chr2g0174791 RchiOBHm_Chr3g0448081 RchiOBHm_Chr3g0449761 RchiOBHm_Chr3g0453291 RchiOBHm_Chr3g0456271 RchiOBHm_Chr3g0456461 RchiOBHm_Chr3g0458351 RchiOBHm_Chr3g0461411 RchiOBHm_Chr3g0461511 RchiOBHm_Chr3g0463871 RchiOBHm_Chr3g0467841 RchiOBHm_Chr3g0470081 RchiOBHm_Chr3g0470571 RchiOBHm_Chr7g0187061 RchiOBHm_Chr7g0187461 RchiOBHm_Chr7g0187681 RchiOBHm_Chr7g0189901 RchiOBHm_Chr7g0190271 RchiOBHm_Chr7g0193451 RchiOBHm_Chr7g0194081 RchiOBHm_Chr7g0195771 RchiOBHm_Chr7g0196301 RchiOBHm_Chr7g0196911
rosa_multiflora	Rmu_sc0000236.1_g000047 Rmu_sc0000284.1_g000007 Rmu_sc0000288.1_g000006 Rmu_sc0000507.1_g000017 Rmu_sc0000580.1_g000015 Rmu_sc0000663.1_g000011 Rmu_sc0000675.1_g000024 Rmu_sc0000693.1_g000072 Rmu_sc0000779.1_g000005 Rmu_sc0000851.1_g000015 Rmu_sc0000962.1_g000001 Rmu_sc0001493.1_g000055 Rmu_sc0001669.1_g000025 Rmu_sc0001891.1_g000051 Rmu_sc0001926.1_g000007 Rmu_sc0002082.1_g000025 Rmu_sc0002141.1_g000001 Rmu_sc0002141.1_g000004 Rmu_sc0002414.1_g000012 Rmu_sc0002557.1_g000022 Rmu_sc0002709.1_g000038 Rmu_sc0002897.1_g000004 Rmu_sc0002934.1_g000055 Rmu_sc0003692.1_g000017 Rmu_sc0004283.1_g000068 Rmu_sc0004598.1_g000010 Rmu_sc0004614.1_g000004 Rmu_sc0004805.1_g000006 Rmu_sc0005142.1_g000041 Rmu_sc0005777.1_g000001 Rmu_sc0006420.1_g000019 Rmu_sc0006803.1_g000016 Rmu_sc0007034.1_g000015 Rmu_sc0008079.1_g000017 Rmu_sc0008148.1_g000040 Rmu_sc0008608.1_g000007 Rmu_sc0008675.1_g000001 Rmu_sc0009663.1_g000001 Rmu_sc0010188.1_g000003 Rmu_sc0010739.1_g000005 Rmu_sc0016265.1_g000001 Rmu_sc0031757.1_g000001 Rmu_ssc0000087.1_g000024 Rmu_ssc0000438.1_g000029
rosa_roxburghii	Rroxscaffold_1G00003350
rosa_rugosa	Rorug03G0248400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	374
AclI	AACGTT	1 cut(s)	122
AclWI	GGATC	3 cut(s)	144, 152, 165
AcyI	GRCGYC	1 cut(s)	371
AgsI	TTSAA	3 cut(s)	10, 252, 337
AhlI	ACTAGT	1 cut(s)	163
AluBI	AGCT	2 cut(s)	474, 496
AluI	AGCT	2 cut(s)	474, 496
Alw21I	GWGCWC	1 cut(s)	476
Alw26I	GTCTC	1 cut(s)	374
AlwI	GGATC	3 cut(s)	144, 152, 165
Ama87I	CYCGRG	1 cut(s)	89
ApeKI	GCWGC	1 cut(s)	496
Asp700I	GAANNNNTTC	2 cut(s)	61, 341
AspLEI	GCGC	1 cut(s)	412
AspS9I	GGNCC	1 cut(s)	185
AsuHPI	GGTGA	2 cut(s)	236, 463
AvaI	CYCGRG	1 cut(s)	89
AvaII	GGWCC	1 cut(s)	185
BamHI	GGATCC	1 cut(s)	157
BanII	GRGCYC	1 cut(s)	476
BbsI	GAAGAC	2 cut(s)	54, 394
Bbv12I	GWGCWC	1 cut(s)	476
BbvI	GCAGC	1 cut(s)	483
BccI	CCATC	2 cut(s)	172, 424
BcoDI	GTCTC	1 cut(s)	374
BcuI	ACTAGT	1 cut(s)	163
BfaI	CTAG	2 cut(s)	164, 263
BfmI	CTRYAG	1 cut(s)	219
BglII	AGATCT	1 cut(s)	14
BisI	GCNGC	1 cut(s)	497
BlpI	GCTNAGC	1 cut(s)	475
BlsI	GCNGC	1 cut(s)	498
Bme18I	GGWCC	1 cut(s)	185
BmeT110I	CYCGRG	1 cut(s)	89
BmgT120I	GGNCC	1 cut(s)	185
BmiI	GGNNCC	3 cut(s)	73, 159, 186
BpiI	GAAGAC	2 cut(s)	54, 394
Bpu1102I	GCTNAGC	1 cut(s)	475
BpuEI	CTTGAG	2 cut(s)	67, 490
BsaHI	GRCGYC	1 cut(s)	371
BsaI	GGTCTC	1 cut(s)	374
BsaJI	CCNNGG	2 cut(s)	375, 398
BseDI	CCNNGG	2 cut(s)	375, 398
BseMII	CTCAG	1 cut(s)	489
BseRI	GAGGAG	2 cut(s)	231, 329
BseXI	GCAGC	1 cut(s)	483
BsiHKAI	GWGCWC	1 cut(s)	476
BsiHKCI	CYCGRG	1 cut(s)	89
BsmAI	GTCTC	1 cut(s)	374
Bso31I	GGTCTC	1 cut(s)	374
BsoBI	CYCGRG	1 cut(s)	89
Bsp1286I	GDGCHC	1 cut(s)	476
Bsp143I	GATC	6 cut(s)	14, 44, 136, 144, 157, 192
Bsp1720I	GCTNAGC	1 cut(s)	475
BspCNI	CTCAG	1 cut(s)	488
BspLI	GGNNCC	3 cut(s)	73, 159, 186
BspPI	GGATC	3 cut(s)	144, 152, 165
BspTNI	GGTCTC	1 cut(s)	374
BssECI	CCNNGG	2 cut(s)	375, 398
BssMI	GATC	6 cut(s)	14, 44, 136, 144, 157, 192
BssNI	GRCGYC	1 cut(s)	371
BssT1I	CCWWGG	1 cut(s)	375
Bst4CI	ACNGT	3 cut(s)	35, 364, 451
Bst6I	CTCTTC	1 cut(s)	347
BstACI	GRCGYC	1 cut(s)	371
BstDEI	CTNAG	2 cut(s)	475, 509
BstHHI	GCGC	1 cut(s)	412
BstKTI	GATC	6 cut(s)	17, 47, 139, 147, 160, 195
BstMAI	GTCTC	1 cut(s)	374
BstMBI	GATC	6 cut(s)	14, 44, 136, 144, 157, 192
BstMWI	GCNNNNNNNGC	2 cut(s)	416, 505
BstSFI	CTRYAG	1 cut(s)	219
BstV1I	GCAGC	1 cut(s)	483
BstV2I	GAAGAC	2 cut(s)	54, 394
BstX2I	RGATCY	3 cut(s)	14, 136, 157
BstYI	RGATCY	3 cut(s)	14, 136, 157
BtsIMutI	CAGTG	1 cut(s)	360
CfoI	GCGC	1 cut(s)	412
Cfr13I	GGNCC	1 cut(s)	185
CviAII	CATG	3 cut(s)	209, 303, 357
CviJI	RGCY	7 cut(s)	88, 218, 419, 474, 479, 496, 508
CviKI_1	RGCY	7 cut(s)	88, 218, 419, 474, 479, 496, 508
DdeI	CTNAG	2 cut(s)	475, 509
DpnI	GATC	6 cut(s)	16, 46, 138, 146, 159, 194
DpnII	GATC	6 cut(s)	14, 44, 136, 144, 157, 192
Eam1104I	CTCTTC	1 cut(s)	347
EarI	CTCTTC	1 cut(s)	347
Ecl136II	GAGCTC	1 cut(s)	474
Eco130I	CCWWGG	1 cut(s)	375
Eco24I	GRGCYC	1 cut(s)	476
Eco31I	GGTCTC	1 cut(s)	374
Eco47I	GGWCC	1 cut(s)	185
Eco53kI	GAGCTC	1 cut(s)	474
Eco88I	CYCGRG	1 cut(s)	89
EcoICRI	GAGCTC	1 cut(s)	474
EcoT14I	CCWWGG	1 cut(s)	375
EcoT38I	GRGCYC	1 cut(s)	476
ErhI	CCWWGG	1 cut(s)	375
FaeI	CATG	3 cut(s)	212, 306, 360
FaiI	YATR	8 cut(s)	38, 210, 221, 234, 304, 358, 414, 416
FalI	AAGNNNNNCTT	2 cut(s)	46, 78
FatI	CATG	3 cut(s)	208, 302, 356
FauNDI	CATATG	1 cut(s)	414
Fnu4HI	GCNGC	1 cut(s)	497
FriOI	GRGCYC	1 cut(s)	476
Fsp4HI	GCNGC	1 cut(s)	497
FspBI	CTAG	2 cut(s)	164, 263
GlaI	GCGC	1 cut(s)	411
GluI	GCNGC	1 cut(s)	497
HhaI	GCGC	1 cut(s)	412
Hin1I	GRCGYC	1 cut(s)	371
Hin1II	CATG	3 cut(s)	212, 306, 360
Hin6I	GCGC	1 cut(s)	410
HinP1I	GCGC	1 cut(s)	410
HincII	GTYRAC	1 cut(s)	228
HindII	GTYRAC	1 cut(s)	228
HinfI	GANTC	2 cut(s)	6, 454
HphI	GGTGA	2 cut(s)	236, 463
Hpy166II	GTNNAC	1 cut(s)	228
Hpy188I	TCNGA	3 cut(s)	119, 399, 429
Hpy188III	TCNNGA	6 cut(s)	75, 91, 142, 328, 469, 491
Hpy8I	GTNNAC	1 cut(s)	228
HpyAV	CCTTC	3 cut(s)	31, 258, 280
HpyCH4III	ACNGT	3 cut(s)	35, 364, 451
HpyCH4IV	ACGT	4 cut(s)	59, 122, 371, 461
HpyCH4V	TGCA	2 cut(s)	30, 360
HpyF10VI	GCNNNNNNNGC	2 cut(s)	416, 505
HpyF3I	CTNAG	2 cut(s)	475, 509
HpySE526I	ACGT	4 cut(s)	59, 122, 371, 461
Hsp92I	GRCGYC	1 cut(s)	371
Hsp92II	CATG	3 cut(s)	212, 306, 360
HspAI	GCGC	1 cut(s)	410
Kzo9I	GATC	6 cut(s)	14, 44, 136, 144, 157, 192
LpnPI	CCDG	3 cut(s)	88, 313, 504
Lsp1109I	GCAGC	1 cut(s)	483
MaeI	CTAG	2 cut(s)	164, 263
MaeII	ACGT	4 cut(s)	59, 122, 371, 461
MaeIII	GTNAC	1 cut(s)	451
MalI	GATC	6 cut(s)	16, 46, 138, 146, 159, 194
MboI	GATC	6 cut(s)	14, 44, 136, 144, 157, 192
MboII	GAAGA	4 cut(s)	54, 114, 334, 399
MflI	RGATCY	3 cut(s)	14, 136, 157
MhlI	GDGCHC	1 cut(s)	476
MluCI	AATT	2 cut(s)	113, 150
MlyI	GAGTC	1 cut(s)	448
MroXI	GAANNNNTTC	2 cut(s)	61, 341
MseI	TTAA	1 cut(s)	112
MslI	CAYNNNNRTG	1 cut(s)	301
MwoI	GCNNNNNNNGC	2 cut(s)	416, 505
NdeI	CATATG	1 cut(s)	414
NdeII	GATC	6 cut(s)	14, 44, 136, 144, 157, 192
NlaIII	CATG	3 cut(s)	212, 306, 360
NlaIV	GGNNCC	3 cut(s)	73, 159, 186
NmuCI	GTSAC	1 cut(s)	451
PaeR7I	CTCGAG	1 cut(s)	89
PdmI	GAANNNNTTC	2 cut(s)	61, 341
PfeI	GAWTC	1 cut(s)	6
PkrI	GCNGC	1 cut(s)	498
PleI	GAGTC	1 cut(s)	448
PpsI	GAGTC	1 cut(s)	448
Psp124BI	GAGCTC	1 cut(s)	476
Psp1406I	AACGTT	1 cut(s)	122
PspN4I	GGNNCC	3 cut(s)	73, 159, 186
PspPI	GGNCC	1 cut(s)	185
PsuI	RGATCY	3 cut(s)	14, 136, 157
RseI	CAYNNNNRTG	1 cut(s)	301
SacI	GAGCTC	1 cut(s)	476
SaqAI	TTAA	1 cut(s)	112
SatI	GCNGC	1 cut(s)	497
Sau3AI	GATC	6 cut(s)	14, 44, 136, 144, 157, 192
Sau96I	GGNCC	1 cut(s)	185
SchI	GAGTC	1 cut(s)	448
SduI	GDGCHC	1 cut(s)	476
SfcI	CTRYAG	1 cut(s)	219
Sfr274I	CTCGAG	1 cut(s)	89
SinI	GGWCC	1 cut(s)	185
SlaI	CTCGAG	1 cut(s)	89
SmiMI	CAYNNNNRTG	1 cut(s)	301
SmlI	CTYRAG	3 cut(s)	82, 89, 469
SmoI	CTYRAG	3 cut(s)	82, 89, 469
SpeI	ACTAGT	1 cut(s)	163
Sse9I	AATT	2 cut(s)	113, 150
SspMI	CTAG	2 cut(s)	164, 263
SstI	GAGCTC	1 cut(s)	476
StyI	CCWWGG	1 cut(s)	375
TaaI	ACNGT	3 cut(s)	35, 364, 451
TaiI	ACGT	4 cut(s)	62, 125, 374, 464
TaqI	TCGA	3 cut(s)	47, 90, 143
TasI	AATT	2 cut(s)	113, 150
TfiI	GAWTC	1 cut(s)	6
Tru1I	TTAA	1 cut(s)	112
Tru9I	TTAA	1 cut(s)	112
TscAI	CASTG	1 cut(s)	367
TseFI	GTSAC	1 cut(s)	451
TseI	GCWGC	1 cut(s)	496
Tsp45I	GTSAC	1 cut(s)	451
TspDTI	ATGAA	2 cut(s)	13, 291
TspRI	CASTG	1 cut(s)	367
VpaK11BI	GGWCC	1 cut(s)	185
XhoI	CTCGAG	1 cut(s)	89
XmnI	GAANNNNTTC	2 cut(s)	61, 341
XspI	CTAG	2 cut(s)	164, 263
ZraI	GACGTC	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.