Homeodomain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Homeodomain | PF00046 | 74 - 134 | 2.1e-10 | Homeodomain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 359 |
| AciI | CCGC | 2 cut(s) | 711, 720 |
| AclI | AACGTT | 1 cut(s) | 423 |
| AclWI | GGATC | 4 cut(s) | 445, 453, 466, 480 |
| AcsI | RAATTY | 2 cut(s) | 57, 413 |
| AcuI | CTGAAG | 1 cut(s) | 77 |
| AcvI | CACGTG | 1 cut(s) | 512 |
| AfaI | GTAC | 2 cut(s) | 290, 568 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 434, 662 |
| AflIII | ACRYGT | 1 cut(s) | 511 |
| AgeI | ACCGGT | 1 cut(s) | 222 |
| AgsI | TTSAA | 4 cut(s) | 311, 409, 553, 638 |
| AhlI | ACTAGT | 1 cut(s) | 464 |
| AjnI | CCWGG | 1 cut(s) | 627 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 42, 74 |
| AluBI | AGCT | 1 cut(s) | 745 |
| AluI | AGCT | 1 cut(s) | 745 |
| Alw21I | GWGCWC | 1 cut(s) | 747 |
| AlwI | GGATC | 4 cut(s) | 445, 453, 466, 480 |
| AoxI | GGCC | 1 cut(s) | 262 |
| ApeKI | GCWGC | 1 cut(s) | 206 |
| ApoI | RAATTY | 2 cut(s) | 57, 413 |
| AsiGI | ACCGGT | 1 cut(s) | 222 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 642 |
| AspS9I | GGNCC | 1 cut(s) | 262 |
| AsuC2I | CCSGG | 1 cut(s) | 211 |
| AsuHPI | GGTGA | 4 cut(s) | 537, 617, 677, 734 |
| AsuII | TTCGAA | 1 cut(s) | 106 |
| BamHI | GGATCC | 1 cut(s) | 458 |
| BanII | GRGCYC | 2 cut(s) | 232, 747 |
| BauI | CACGAG | 1 cut(s) | 390 |
| BbrPI | CACGTG | 1 cut(s) | 512 |
| BbsI | GAAGAC | 2 cut(s) | 355, 695 |
| Bbv12I | GWGCWC | 1 cut(s) | 747 |
| BbvI | GCAGC | 1 cut(s) | 218 |
| BccI | CCATC | 3 cut(s) | 182, 333, 473 |
| BciT130I | CCWGG | 1 cut(s) | 629 |
| BcnI | CCSGG | 1 cut(s) | 211 |
| BcuI | ACTAGT | 1 cut(s) | 464 |
| BfaI | CTAG | 2 cut(s) | 443, 465 |
| BglII | AGATCT | 2 cut(s) | 315, 445 |
| BisI | GCNGC | 2 cut(s) | 207, 712 |
| BlpI | GCTNAGC | 1 cut(s) | 746 |
| BlsI | GCNGC | 2 cut(s) | 208, 713 |
| BmcAI | AGTACT | 1 cut(s) | 568 |
| Bme1390I | CCNGG | 2 cut(s) | 211, 629 |
| BmgT120I | GGNCC | 1 cut(s) | 262 |
| BmiI | GGNNCC | 4 cut(s) | 138, 231, 374, 460 |
| BmrFI | CCNGG | 2 cut(s) | 211, 629 |
| BmsI | GCATC | 1 cut(s) | 757 |
| BpiI | GAAGAC | 2 cut(s) | 355, 695 |
| BpmI | CTGGAG | 1 cut(s) | 282 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 746 |
| Bpu14I | TTCGAA | 1 cut(s) | 106 |
| BpuEI | CTTGAG | 3 cut(s) | 242, 368, 761 |
| BpuMI | CCSGG | 1 cut(s) | 211 |
| BsaAI | YACGTR | 1 cut(s) | 512 |
| BsaJI | CCNNGG | 1 cut(s) | 699 |
| BsaWI | WCCGGW | 2 cut(s) | 222, 427 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 434, 662 |
| Bse118I | RCCGGY | 1 cut(s) | 222 |
| Bse1I | ACTGG | 2 cut(s) | 72, 564 |
| BseBI | CCWGG | 1 cut(s) | 629 |
| BseDI | CCNNGG | 1 cut(s) | 699 |
| BseGI | GGATG | 1 cut(s) | 193 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 434, 662 |
| BseMII | CTCAG | 2 cut(s) | 23, 760 |
| BseNI | ACTGG | 2 cut(s) | 72, 564 |
| BseRI | GAGGAG | 3 cut(s) | 532, 630, 633 |
| BseXI | GCAGC | 1 cut(s) | 218 |
| BseYI | CCCAGC | 1 cut(s) | 171 |
| BshFI | GGCC | 1 cut(s) | 264 |
| BshTI | ACCGGT | 1 cut(s) | 222 |
| BsiHKAI | GWGCWC | 1 cut(s) | 747 |
| BsiSI | CCGG | 3 cut(s) | 210, 223, 428 |
| BslFI | GGGAC | 2 cut(s) | 50, 226 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 434, 662 |
| BsmFI | GGGAC | 2 cut(s) | 50, 226 |
| BsmI | GAATGC | 1 cut(s) | 27 |
| BsnI | GGCC | 1 cut(s) | 264 |
| Bsp119I | TTCGAA | 1 cut(s) | 106 |
| Bsp1286I | GDGCHC | 2 cut(s) | 232, 747 |
| Bsp143I | GATC | 8 cut(s) | 315, 345, 437, 445, 458, 485, 493, 622 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 746 |
| BspACI | CCGC | 2 cut(s) | 711, 720 |
| BspANI | GGCC | 1 cut(s) | 264 |
| BspCNI | CTCAG | 2 cut(s) | 24, 759 |
| BspLI | GGNNCC | 4 cut(s) | 138, 231, 374, 460 |
| BspPI | GGATC | 4 cut(s) | 445, 453, 466, 480 |
| BspT104I | TTCGAA | 1 cut(s) | 106 |
| BsrFI | RCCGGY | 1 cut(s) | 222 |
| BsrI | ACTGG | 2 cut(s) | 72, 564 |
| BssAI | RCCGGY | 1 cut(s) | 222 |
| BssECI | CCNNGG | 1 cut(s) | 699 |
| BssMI | GATC | 8 cut(s) | 315, 345, 437, 445, 458, 485, 493, 622 |
| BssSI | CACGAG | 1 cut(s) | 390 |
| Bst2BI | CACGAG | 1 cut(s) | 390 |
| Bst2UI | CCWGG | 1 cut(s) | 629 |
| Bst4CI | ACNGT | 2 cut(s) | 41, 336 |
| BstBAI | YACGTR | 1 cut(s) | 512 |
| BstBI | TTCGAA | 1 cut(s) | 106 |
| BstDEI | CTNAG | 3 cut(s) | 32, 248, 746 |
| BstF5I | GGATG | 1 cut(s) | 193 |
| BstKTI | GATC | 8 cut(s) | 318, 348, 440, 448, 461, 488, 496, 625 |
| BstMBI | GATC | 8 cut(s) | 315, 345, 437, 445, 458, 485, 493, 622 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 717 |
| BstNI | CCWGG | 1 cut(s) | 629 |
| BstSCI | CCNGG | 2 cut(s) | 209, 627 |
| BstV1I | GCAGC | 1 cut(s) | 218 |
| BstV2I | GAAGAC | 2 cut(s) | 355, 695 |
| BstX2I | RGATCY | 5 cut(s) | 315, 437, 445, 458, 485 |
| BstYI | RGATCY | 5 cut(s) | 315, 437, 445, 458, 485 |
| BsuRI | GGCC | 1 cut(s) | 264 |
| BtsCI | GGATG | 1 cut(s) | 193 |
| Cfr10I | RCCGGY | 1 cut(s) | 222 |
| Cfr13I | GGNCC | 1 cut(s) | 262 |
| Csp6I | GTAC | 2 cut(s) | 289, 567 |
| CspAI | ACCGGT | 1 cut(s) | 222 |
| CviAII | CATG | 6 cut(s) | 133, 604, 658, 662, 685, 775 |
| CviJI | RGCY | 9 cut(s) | 97, 209, 230, 264, 389, 519, 714, 745, 750 |
| CviKI_1 | RGCY | 9 cut(s) | 97, 209, 230, 264, 389, 519, 714, 745, 750 |
| CviQI | GTAC | 2 cut(s) | 289, 567 |
| DdeI | CTNAG | 3 cut(s) | 32, 248, 746 |
| DpnI | GATC | 8 cut(s) | 317, 347, 439, 447, 460, 487, 495, 624 |
| DpnII | GATC | 8 cut(s) | 315, 345, 437, 445, 458, 485, 493, 622 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 359 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 359 |
| Ecl136II | GAGCTC | 1 cut(s) | 745 |
| Eco24I | GRGCYC | 2 cut(s) | 232, 747 |
| Eco53kI | GAGCTC | 1 cut(s) | 745 |
| Eco57I | CTGAAG | 1 cut(s) | 77 |
| Eco72I | CACGTG | 1 cut(s) | 512 |
| EcoICRI | GAGCTC | 1 cut(s) | 745 |
| EcoO109I | RGGNCCY | 1 cut(s) | 262 |
| EcoRII | CCWGG | 1 cut(s) | 627 |
| EcoT22I | ATGCAT | 1 cut(s) | 663 |
| EcoT38I | GRGCYC | 2 cut(s) | 232, 747 |
| FaeI | CATG | 6 cut(s) | 136, 607, 661, 665, 688, 778 |
| FaqI | GGGAC | 2 cut(s) | 50, 226 |
| FatI | CATG | 6 cut(s) | 132, 603, 657, 661, 684, 774 |
| Fnu4HI | GCNGC | 2 cut(s) | 207, 712 |
| FokI | GGATG | 1 cut(s) | 200 |
| FriOI | GRGCYC | 2 cut(s) | 232, 747 |
| Fsp4HI | GCNGC | 2 cut(s) | 207, 712 |
| FspBI | CTAG | 2 cut(s) | 443, 465 |
| GluI | GCNGC | 2 cut(s) | 207, 712 |
| GsaI | CCCAGC | 1 cut(s) | 175 |
| GsuI | CTGGAG | 1 cut(s) | 282 |
| HaeIII | GGCC | 1 cut(s) | 264 |
| HapII | CCGG | 3 cut(s) | 210, 223, 428 |
| Hin1II | CATG | 6 cut(s) | 136, 607, 661, 665, 688, 778 |
| HincII | GTYRAC | 1 cut(s) | 529 |
| HindII | GTYRAC | 1 cut(s) | 529 |
| HinfI | GANTC | 3 cut(s) | 252, 307, 725 |
| HpaII | CCGG | 3 cut(s) | 210, 223, 428 |
| HphI | GGTGA | 4 cut(s) | 537, 617, 677, 734 |
| Hpy166II | GTNNAC | 2 cut(s) | 44, 529 |
| Hpy188I | TCNGA | 5 cut(s) | 33, 66, 330, 420, 700 |
| Hpy188III | TCNNGA | 5 cut(s) | 299, 311, 376, 392, 443 |
| Hpy8I | GTNNAC | 2 cut(s) | 44, 529 |
| HpyAV | CCTTC | 4 cut(s) | 101, 403, 559, 653 |
| HpyCH4III | ACNGT | 2 cut(s) | 41, 336 |
| HpyCH4IV | ACGT | 3 cut(s) | 360, 423, 511 |
| HpyCH4V | TGCA | 4 cut(s) | 27, 151, 661, 770 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 717 |
| HpyF3I | CTNAG | 3 cut(s) | 32, 248, 746 |
| HpySE526I | ACGT | 3 cut(s) | 360, 423, 511 |
| Hsp92II | CATG | 6 cut(s) | 136, 607, 661, 665, 688, 778 |
| Kzo9I | GATC | 8 cut(s) | 315, 345, 437, 445, 458, 485, 493, 622 |
| LmnI | GCTCC | 2 cut(s) | 160, 235 |
| Lsp1109I | GCAGC | 1 cut(s) | 218 |
| LweI | GCATC | 1 cut(s) | 757 |
| MaeI | CTAG | 2 cut(s) | 443, 465 |
| MaeII | ACGT | 3 cut(s) | 360, 423, 511 |
| MaeIII | GTNAC | 2 cut(s) | 507, 722 |
| MalI | GATC | 8 cut(s) | 317, 347, 439, 447, 460, 487, 495, 624 |
| MboI | GATC | 8 cut(s) | 315, 345, 437, 445, 458, 485, 493, 622 |
| MboII | GAAGA | 4 cut(s) | 53, 115, 355, 700 |
| MflI | RGATCY | 5 cut(s) | 315, 437, 445, 458, 485 |
| MhlI | GDGCHC | 2 cut(s) | 232, 747 |
| MluCI | AATT | 3 cut(s) | 57, 413, 451 |
| MlyI | GAGTC | 1 cut(s) | 719 |
| Mph1103I | ATGCAT | 1 cut(s) | 663 |
| MroXI | GAANNNNTTC | 1 cut(s) | 642 |
| MseI | TTAA | 1 cut(s) | 285 |
| MslI | CAYNNNNRTG | 1 cut(s) | 131 |
| MspI | CCGG | 3 cut(s) | 210, 223, 428 |
| MspR9I | CCNGG | 2 cut(s) | 211, 629 |
| Mva1269I | GAATGC | 1 cut(s) | 27 |
| MvaI | CCWGG | 1 cut(s) | 629 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 717 |
| NciI | CCSGG | 1 cut(s) | 211 |
| NdeII | GATC | 8 cut(s) | 315, 345, 437, 445, 458, 485, 493, 622 |
| NlaIII | CATG | 6 cut(s) | 136, 607, 661, 665, 688, 778 |
| NlaIV | GGNNCC | 4 cut(s) | 138, 231, 374, 460 |
| NmuCI | GTSAC | 2 cut(s) | 507, 722 |
| NsiI | ATGCAT | 1 cut(s) | 663 |
| NspV | TTCGAA | 1 cut(s) | 106 |
| PctI | GAATGC | 1 cut(s) | 27 |
| PdmI | GAANNNNTTC | 1 cut(s) | 642 |
| PfeI | GAWTC | 2 cut(s) | 252, 307 |
| PinAI | ACCGGT | 1 cut(s) | 222 |
| PkrI | GCNGC | 2 cut(s) | 208, 713 |
| PleI | GAGTC | 1 cut(s) | 719 |
| PmaCI | CACGTG | 1 cut(s) | 512 |
| PmlI | CACGTG | 1 cut(s) | 512 |
| PpsI | GAGTC | 1 cut(s) | 719 |
| Ppu21I | YACGTR | 1 cut(s) | 512 |
| Psp124BI | GAGCTC | 1 cut(s) | 747 |
| Psp1406I | AACGTT | 1 cut(s) | 423 |
| Psp6I | CCWGG | 1 cut(s) | 627 |
| PspCI | CACGTG | 1 cut(s) | 512 |
| PspFI | CCCAGC | 1 cut(s) | 171 |
| PspGI | CCWGG | 1 cut(s) | 627 |
| PspN4I | GGNNCC | 4 cut(s) | 138, 231, 374, 460 |
| PspPI | GGNCC | 1 cut(s) | 262 |
| PsuI | RGATCY | 5 cut(s) | 315, 437, 445, 458, 485 |
| RsaI | GTAC | 2 cut(s) | 290, 568 |
| RsaNI | GTAC | 2 cut(s) | 289, 567 |
| RseI | CAYNNNNRTG | 1 cut(s) | 131 |
| SacI | GAGCTC | 1 cut(s) | 747 |
| SaqAI | TTAA | 1 cut(s) | 285 |
| SatI | GCNGC | 2 cut(s) | 207, 712 |
| Sau3AI | GATC | 8 cut(s) | 315, 345, 437, 445, 458, 485, 493, 622 |
| Sau96I | GGNCC | 1 cut(s) | 262 |
| ScaI | AGTACT | 1 cut(s) | 568 |
| SchI | GAGTC | 1 cut(s) | 719 |
| ScrFI | CCNGG | 2 cut(s) | 211, 629 |
| SduI | GDGCHC | 2 cut(s) | 232, 747 |
| SetI | ASST | 9 cut(s) | 26, 244, 363, 384, 426, 514, 575, 709, 747 |
| SfaNI | GCATC | 1 cut(s) | 757 |
| SfuI | TTCGAA | 1 cut(s) | 106 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 131 |
| SmlI | CTYRAG | 3 cut(s) | 257, 383, 740 |
| SmoI | CTYRAG | 3 cut(s) | 257, 383, 740 |
| SpeI | ACTAGT | 1 cut(s) | 464 |
| Sse9I | AATT | 3 cut(s) | 57, 413, 451 |
| SsiI | CCGC | 2 cut(s) | 711, 720 |
| SspMI | CTAG | 2 cut(s) | 443, 465 |
| SstI | GAGCTC | 1 cut(s) | 747 |
| StyD4I | CCNGG | 2 cut(s) | 209, 627 |
| TaaI | ACNGT | 2 cut(s) | 41, 336 |
| TaiI | ACGT | 3 cut(s) | 363, 426, 514 |
| TaqI | TCGA | 3 cut(s) | 106, 183, 348 |
| TasI | AATT | 3 cut(s) | 57, 413, 451 |
| TatI | WGTACW | 1 cut(s) | 566 |
| TauI | GCSGC | 1 cut(s) | 714 |
| TfiI | GAWTC | 2 cut(s) | 252, 307 |
| Tru1I | TTAA | 1 cut(s) | 285 |
| Tru9I | TTAA | 1 cut(s) | 285 |
| TseFI | GTSAC | 2 cut(s) | 507, 722 |
| TseI | GCWGC | 1 cut(s) | 206 |
| Tsp45I | GTSAC | 2 cut(s) | 507, 722 |
| TspDTI | ATGAA | 3 cut(s) | 115, 592, 701 |
| TspGWI | ACGGA | 1 cut(s) | 777 |
| XapI | RAATTY | 2 cut(s) | 57, 413 |
| XbaI | TCTAGA | 1 cut(s) | 442 |
| XmnI | GAANNNNTTC | 1 cut(s) | 642 |
| XspI | CTAG | 2 cut(s) | 443, 465 |
| ZrmI | AGTACT | 1 cut(s) | 568 |
| Zsp2I | ATGCAT | 1 cut(s) | 663 |