Homeodomain
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 278 |
| AatII | GACGTC | 1 cut(s) | 633 |
| AccIII | TCCGGA | 1 cut(s) | 748 |
| AciI | CCGC | 1 cut(s) | 699 |
| AclI | AACGTT | 1 cut(s) | 342 |
| AclWI | GGATC | 4 cut(s) | 364, 372, 385, 451 |
| AcsI | RAATTY | 1 cut(s) | 332 |
| AcuI | CTGAAG | 1 cut(s) | 161 |
| AcyI | GRCGYC | 1 cut(s) | 630 |
| AfaI | GTAC | 2 cut(s) | 209, 526 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 141, 620 |
| AgeI | ACCGGT | 1 cut(s) | 141 |
| AgsI | TTSAA | 5 cut(s) | 35, 230, 328, 390, 511 |
| AjnI | CCWGG | 1 cut(s) | 585 |
| AluBI | AGCT | 4 cut(s) | 31, 161, 732, 754 |
| AluI | AGCT | 4 cut(s) | 31, 161, 732, 754 |
| Alw21I | GWGCWC | 2 cut(s) | 621, 734 |
| Alw26I | GTCTC | 1 cut(s) | 590 |
| Alw44I | GTGCAC | 1 cut(s) | 617 |
| AlwI | GGATC | 4 cut(s) | 364, 372, 385, 451 |
| Aor13HI | TCCGGA | 1 cut(s) | 748 |
| AoxI | GGCC | 1 cut(s) | 128 |
| ApaLI | GTGCAC | 1 cut(s) | 617 |
| ApeKI | GCWGC | 2 cut(s) | 98, 754 |
| ApoI | RAATTY | 1 cut(s) | 332 |
| AsiGI | ACCGGT | 1 cut(s) | 141 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 281 |
| AspLEI | GCGC | 1 cut(s) | 671 |
| AspS9I | GGNCC | 1 cut(s) | 405 |
| AsuC2I | CCSGG | 1 cut(s) | 103 |
| AsuHPI | GGTGA | 4 cut(s) | 446, 495, 575, 635 |
| AvaII | GGWCC | 1 cut(s) | 405 |
| BaeGI | GKGCMC | 1 cut(s) | 621 |
| BamHI | GGATCC | 1 cut(s) | 377 |
| BanII | GRGCYC | 2 cut(s) | 186, 734 |
| BbsI | GAAGAC | 3 cut(s) | 233, 274, 653 |
| Bbv12I | GWGCWC | 2 cut(s) | 621, 734 |
| BbvI | GCAGC | 2 cut(s) | 110, 741 |
| BccI | CCATC | 3 cut(s) | 392, 434, 753 |
| BciT130I | CCWGG | 1 cut(s) | 587 |
| BcnI | CCSGG | 1 cut(s) | 103 |
| BcoDI | GTCTC | 1 cut(s) | 590 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 127 |
| BisI | GCNGC | 2 cut(s) | 99, 755 |
| BlpI | GCTNAGC | 1 cut(s) | 733 |
| BlsI | GCNGC | 2 cut(s) | 100, 756 |
| BmcAI | AGTACT | 1 cut(s) | 526 |
| Bme1390I | CCNGG | 2 cut(s) | 103, 587 |
| Bme18I | GGWCC | 1 cut(s) | 405 |
| BmgT120I | GGNCC | 1 cut(s) | 405 |
| BmiI | GGNNCC | 2 cut(s) | 6, 379 |
| BmrFI | CCNGG | 2 cut(s) | 103, 587 |
| BoxI | GACNNNNGTC | 1 cut(s) | 198 |
| BpiI | GAAGAC | 3 cut(s) | 233, 274, 653 |
| BpmI | CTGGAG | 1 cut(s) | 201 |
| Bpu10I | CCTNAGC | 1 cut(s) | 694 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 733 |
| BpuEI | CTTGAG | 2 cut(s) | 287, 748 |
| BpuMI | CCSGG | 1 cut(s) | 103 |
| Bsa29I | ATCGAT | 1 cut(s) | 450 |
| BsaHI | GRCGYC | 1 cut(s) | 630 |
| BsaJI | CCNNGG | 4 cut(s) | 75, 460, 634, 657 |
| BsaWI | WCCGGW | 2 cut(s) | 141, 748 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 141, 620 |
| Bse118I | RCCGGY | 1 cut(s) | 141 |
| Bse1I | ACTGG | 2 cut(s) | 436, 522 |
| BseAI | TCCGGA | 1 cut(s) | 748 |
| BseBI | CCWGG | 1 cut(s) | 587 |
| BseCI | ATCGAT | 1 cut(s) | 450 |
| BseDI | CCNNGG | 4 cut(s) | 75, 460, 634, 657 |
| BseGI | GGATG | 2 cut(s) | 653, 745 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 141, 620 |
| BseMII | CTCAG | 2 cut(s) | 708, 747 |
| BseNI | ACTGG | 2 cut(s) | 436, 522 |
| BseRI | GAGGAG | 3 cut(s) | 92, 588, 591 |
| BseSI | GKGCMC | 1 cut(s) | 621 |
| BseXI | GCAGC | 2 cut(s) | 110, 741 |
| BseYI | CCCAGC | 2 cut(s) | 39, 63 |
| BshFI | GGCC | 1 cut(s) | 130 |
| BshTI | ACCGGT | 1 cut(s) | 141 |
| BshVI | ATCGAT | 1 cut(s) | 450 |
| BsiHKAI | GWGCWC | 2 cut(s) | 621, 734 |
| BsiSI | CCGG | 3 cut(s) | 102, 142, 749 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 141, 620 |
| BsmAI | GTCTC | 1 cut(s) | 590 |
| BsnI | GGCC | 1 cut(s) | 130 |
| Bsp1286I | GDGCHC | 3 cut(s) | 186, 621, 734 |
| Bsp13I | TCCGGA | 1 cut(s) | 748 |
| Bsp143I | GATC | 8 cut(s) | 264, 356, 364, 377, 412, 443, 451, 580 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 733 |
| BspACI | CCGC | 1 cut(s) | 699 |
| BspANI | GGCC | 1 cut(s) | 130 |
| BspCNI | CTCAG | 2 cut(s) | 707, 746 |
| BspDI | ATCGAT | 1 cut(s) | 450 |
| BspEI | TCCGGA | 1 cut(s) | 748 |
| BspHI | TCATGA | 1 cut(s) | 310 |
| BspLI | GGNNCC | 2 cut(s) | 6, 379 |
| BspPI | GGATC | 4 cut(s) | 364, 372, 385, 451 |
| BsrFI | RCCGGY | 1 cut(s) | 141 |
| BsrI | ACTGG | 2 cut(s) | 436, 522 |
| BssAI | RCCGGY | 1 cut(s) | 141 |
| BssECI | CCNNGG | 4 cut(s) | 75, 460, 634, 657 |
| BssMI | GATC | 8 cut(s) | 264, 356, 364, 377, 412, 443, 451, 580 |
| BssNI | GRCGYC | 1 cut(s) | 630 |
| BssT1I | CCWWGG | 2 cut(s) | 460, 634 |
| Bst2UI | CCWGG | 1 cut(s) | 587 |
| Bst4CI | ACNGT | 3 cut(s) | 255, 623, 710 |
| Bst6I | CTCTTC | 1 cut(s) | 606 |
| BstACI | GRCGYC | 1 cut(s) | 630 |
| BstDEI | CTNAG | 3 cut(s) | 167, 694, 733 |
| BstEII | GGTNACC | 1 cut(s) | 638 |
| BstF5I | GGATG | 2 cut(s) | 653, 745 |
| BstHHI | GCGC | 1 cut(s) | 671 |
| BstKTI | GATC | 8 cut(s) | 267, 359, 367, 380, 415, 446, 454, 583 |
| BstMAI | GTCTC | 1 cut(s) | 590 |
| BstMBI | GATC | 8 cut(s) | 264, 356, 364, 377, 412, 443, 451, 580 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 127 |
| BstNI | CCWGG | 1 cut(s) | 587 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 198 |
| BstPI | GGTNACC | 1 cut(s) | 638 |
| BstSCI | CCNGG | 2 cut(s) | 101, 585 |
| BstSLI | GKGCMC | 1 cut(s) | 621 |
| BstV1I | GCAGC | 2 cut(s) | 110, 741 |
| BstV2I | GAAGAC | 3 cut(s) | 233, 274, 653 |
| BstX2I | RGATCY | 2 cut(s) | 356, 377 |
| BstYI | RGATCY | 2 cut(s) | 356, 377 |
| Bsu15I | ATCGAT | 1 cut(s) | 450 |
| BsuRI | GGCC | 1 cut(s) | 130 |
| BsuTUI | ATCGAT | 1 cut(s) | 450 |
| BtsCI | GGATG | 2 cut(s) | 653, 745 |
| BtsIMutI | CAGTG | 1 cut(s) | 715 |
| CciI | TCATGA | 1 cut(s) | 310 |
| CfoI | GCGC | 1 cut(s) | 671 |
| Cfr10I | RCCGGY | 1 cut(s) | 141 |
| Cfr13I | GGNCC | 1 cut(s) | 405 |
| ClaI | ATCGAT | 1 cut(s) | 450 |
| CseI | GACGC | 1 cut(s) | 460 |
| Csp6I | GTAC | 2 cut(s) | 208, 525 |
| CspAI | ACCGGT | 1 cut(s) | 141 |
| CviAII | CATG | 3 cut(s) | 311, 468, 562 |
| CviQI | GTAC | 2 cut(s) | 208, 525 |
| DdeI | CTNAG | 3 cut(s) | 167, 694, 733 |
| DpnI | GATC | 8 cut(s) | 266, 358, 366, 379, 414, 445, 453, 582 |
| DpnII | GATC | 8 cut(s) | 264, 356, 364, 377, 412, 443, 451, 580 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 278 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 278 |
| Eam1104I | CTCTTC | 1 cut(s) | 606 |
| EarI | CTCTTC | 1 cut(s) | 606 |
| Ecl136II | GAGCTC | 1 cut(s) | 732 |
| Eco130I | CCWWGG | 2 cut(s) | 460, 634 |
| Eco24I | GRGCYC | 2 cut(s) | 186, 734 |
| Eco47I | GGWCC | 1 cut(s) | 405 |
| Eco53kI | GAGCTC | 1 cut(s) | 732 |
| Eco57I | CTGAAG | 1 cut(s) | 161 |
| Eco91I | GGTNACC | 1 cut(s) | 638 |
| EcoICRI | GAGCTC | 1 cut(s) | 732 |
| EcoO65I | GGTNACC | 1 cut(s) | 638 |
| EcoRII | CCWGG | 1 cut(s) | 585 |
| EcoT14I | CCWWGG | 2 cut(s) | 460, 634 |
| EcoT38I | GRGCYC | 2 cut(s) | 186, 734 |
| ErhI | CCWWGG | 2 cut(s) | 460, 634 |
| FaeI | CATG | 3 cut(s) | 314, 471, 565 |
| FaiI | YATR | 9 cut(s) | 192, 258, 312, 469, 480, 493, 563, 705, 773 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 266, 298 |
| FatI | CATG | 3 cut(s) | 310, 467, 561 |
| Fnu4HI | GCNGC | 2 cut(s) | 99, 755 |
| FokI | GGATG | 2 cut(s) | 640, 732 |
| FriOI | GRGCYC | 2 cut(s) | 186, 734 |
| Fsp4HI | GCNGC | 2 cut(s) | 99, 755 |
| GlaI | GCGC | 1 cut(s) | 670 |
| GluI | GCNGC | 2 cut(s) | 99, 755 |
| GsaI | CCCAGC | 2 cut(s) | 43, 67 |
| GsuI | CTGGAG | 1 cut(s) | 201 |
| HaeIII | GGCC | 1 cut(s) | 130 |
| HapII | CCGG | 3 cut(s) | 102, 142, 749 |
| HgaI | GACGC | 1 cut(s) | 460 |
| HhaI | GCGC | 1 cut(s) | 671 |
| Hin1I | GRCGYC | 1 cut(s) | 630 |
| Hin1II | CATG | 3 cut(s) | 314, 471, 565 |
| Hin6I | GCGC | 1 cut(s) | 669 |
| HinP1I | GCGC | 1 cut(s) | 669 |
| HincII | GTYRAC | 1 cut(s) | 487 |
| HindII | GTYRAC | 1 cut(s) | 487 |
| HinfI | GANTC | 4 cut(s) | 148, 171, 226, 598 |
| HpaII | CCGG | 3 cut(s) | 102, 142, 749 |
| HphI | GGTGA | 4 cut(s) | 446, 495, 575, 635 |
| Hpy166II | GTNNAC | 3 cut(s) | 147, 487, 619 |
| Hpy188I | TCNGA | 4 cut(s) | 249, 297, 339, 658 |
| Hpy188III | TCNNGA | 7 cut(s) | 218, 230, 311, 362, 595, 727, 749 |
| Hpy8I | GTNNAC | 3 cut(s) | 147, 487, 619 |
| Hpy99I | CGWCG | 1 cut(s) | 476 |
| HpyAV | CCTTC | 5 cut(s) | 185, 322, 508, 517, 656 |
| HpyCH4III | ACNGT | 3 cut(s) | 255, 623, 710 |
| HpyCH4IV | ACGT | 3 cut(s) | 279, 342, 630 |
| HpyCH4V | TGCA | 1 cut(s) | 619 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 127 |
| HpyF3I | CTNAG | 3 cut(s) | 167, 694, 733 |
| HpySE526I | ACGT | 3 cut(s) | 279, 342, 630 |
| Hsp92I | GRCGYC | 1 cut(s) | 630 |
| Hsp92II | CATG | 3 cut(s) | 314, 471, 565 |
| HspAI | GCGC | 1 cut(s) | 669 |
| Kpn2I | TCCGGA | 1 cut(s) | 748 |
| Kzo9I | GATC | 8 cut(s) | 264, 356, 364, 377, 412, 443, 451, 580 |
| LmnI | GCTCC | 2 cut(s) | 28, 751 |
| Lsp1109I | GCAGC | 2 cut(s) | 110, 741 |
| MaeII | ACGT | 3 cut(s) | 279, 342, 630 |
| MaeIII | GTNAC | 3 cut(s) | 200, 638, 677 |
| MalI | GATC | 8 cut(s) | 266, 358, 366, 379, 414, 445, 453, 582 |
| MboI | GATC | 8 cut(s) | 264, 356, 364, 377, 412, 443, 451, 580 |
| MboII | GAAGA | 4 cut(s) | 233, 274, 593, 658 |
| MflI | RGATCY | 2 cut(s) | 356, 377 |
| MhlI | GDGCHC | 3 cut(s) | 186, 621, 734 |
| MluCI | AATT | 2 cut(s) | 332, 370 |
| MlyI | GAGTC | 2 cut(s) | 142, 592 |
| MroI | TCCGGA | 1 cut(s) | 748 |
| MroXI | GAANNNNTTC | 1 cut(s) | 281 |
| MslI | CAYNNNNRTG | 1 cut(s) | 708 |
| MspI | CCGG | 3 cut(s) | 102, 142, 749 |
| MspR9I | CCNGG | 2 cut(s) | 103, 587 |
| MvaI | CCWGG | 1 cut(s) | 587 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 127 |
| NciI | CCSGG | 1 cut(s) | 103 |
| NdeII | GATC | 8 cut(s) | 264, 356, 364, 377, 412, 443, 451, 580 |
| NlaIII | CATG | 3 cut(s) | 314, 471, 565 |
| NlaIV | GGNNCC | 2 cut(s) | 6, 379 |
| NmuCI | GTSAC | 1 cut(s) | 200 |
| PagI | TCATGA | 1 cut(s) | 310 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 627 |
| PdmI | GAANNNNTTC | 1 cut(s) | 281 |
| PfeI | GAWTC | 2 cut(s) | 171, 226 |
| PinAI | ACCGGT | 1 cut(s) | 141 |
| PkrI | GCNGC | 2 cut(s) | 100, 756 |
| PleI | GAGTC | 2 cut(s) | 142, 592 |
| PpsI | GAGTC | 2 cut(s) | 142, 592 |
| PshAI | GACNNNNGTC | 1 cut(s) | 198 |
| Psp124BI | GAGCTC | 1 cut(s) | 734 |
| Psp1406I | AACGTT | 1 cut(s) | 342 |
| Psp6I | CCWGG | 1 cut(s) | 585 |
| PspEI | GGTNACC | 1 cut(s) | 638 |
| PspFI | CCCAGC | 2 cut(s) | 39, 63 |
| PspGI | CCWGG | 1 cut(s) | 585 |
| PspN4I | GGNNCC | 2 cut(s) | 6, 379 |
| PspPI | GGNCC | 1 cut(s) | 405 |
| PsuI | RGATCY | 2 cut(s) | 356, 377 |
| RsaI | GTAC | 2 cut(s) | 209, 526 |
| RsaNI | GTAC | 2 cut(s) | 208, 525 |
| RseI | CAYNNNNRTG | 1 cut(s) | 708 |
| SacI | GAGCTC | 1 cut(s) | 734 |
| SatI | GCNGC | 2 cut(s) | 99, 755 |
| Sau3AI | GATC | 8 cut(s) | 264, 356, 364, 377, 412, 443, 451, 580 |
| Sau96I | GGNCC | 1 cut(s) | 405 |
| ScaI | AGTACT | 1 cut(s) | 526 |
| SchI | GAGTC | 2 cut(s) | 142, 592 |
| ScrFI | CCNGG | 2 cut(s) | 103, 587 |
| SduI | GDGCHC | 3 cut(s) | 186, 621, 734 |
| SinI | GGWCC | 1 cut(s) | 405 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 708 |
| SmlI | CTYRAG | 2 cut(s) | 302, 727 |
| SmoI | CTYRAG | 2 cut(s) | 302, 727 |
| Sse9I | AATT | 2 cut(s) | 332, 370 |
| SsiI | CCGC | 1 cut(s) | 699 |
| SstI | GAGCTC | 1 cut(s) | 734 |
| StyD4I | CCNGG | 2 cut(s) | 101, 585 |
| StyI | CCWWGG | 2 cut(s) | 460, 634 |
| TaaI | ACNGT | 3 cut(s) | 255, 623, 710 |
| TaiI | ACGT | 3 cut(s) | 282, 345, 633 |
| TaqI | TCGA | 4 cut(s) | 267, 363, 450, 594 |
| TasI | AATT | 2 cut(s) | 332, 370 |
| TatI | WGTACW | 1 cut(s) | 524 |
| TfiI | GAWTC | 2 cut(s) | 171, 226 |
| TscAI | CASTG | 1 cut(s) | 715 |
| TseFI | GTSAC | 1 cut(s) | 200 |
| TseI | GCWGC | 2 cut(s) | 98, 754 |
| Tsp45I | GTSAC | 1 cut(s) | 200 |
| TspDTI | ATGAA | 2 cut(s) | 233, 550 |
| TspRI | CASTG | 1 cut(s) | 715 |
| VneI | GTGCAC | 1 cut(s) | 617 |
| VpaK11BI | GGWCC | 1 cut(s) | 405 |
| XapI | RAATTY | 1 cut(s) | 332 |
| XmnI | GAANNNNTTC | 1 cut(s) | 281 |
| ZraI | GACGTC | 1 cut(s) | 631 |
| ZrmI | AGTACT | 1 cut(s) | 526 |