Homeodomain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Homeodomain | PF00046 | 22 - 82 | 1.2e-10 | Homeodomain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 203 |
| AciI | CCGC | 3 cut(s) | 83, 555, 564 |
| AclI | AACGTT | 1 cut(s) | 267 |
| AclWI | GGATC | 4 cut(s) | 289, 297, 310, 324 |
| AcsI | RAATTY | 1 cut(s) | 257 |
| AcvI | CACGTG | 1 cut(s) | 356 |
| AfaI | GTAC | 2 cut(s) | 134, 412 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 278, 506 |
| AflIII | ACRYGT | 1 cut(s) | 355 |
| AgeI | ACCGGT | 1 cut(s) | 66 |
| AgsI | TTSAA | 4 cut(s) | 155, 253, 397, 482 |
| AhlI | ACTAGT | 1 cut(s) | 308 |
| AjnI | CCWGG | 1 cut(s) | 471 |
| AluBI | AGCT | 1 cut(s) | 589 |
| AluI | AGCT | 1 cut(s) | 589 |
| Alw21I | GWGCWC | 1 cut(s) | 591 |
| AlwI | GGATC | 4 cut(s) | 289, 297, 310, 324 |
| AoxI | GGCC | 1 cut(s) | 106 |
| ApeKI | GCWGC | 1 cut(s) | 50 |
| ApoI | RAATTY | 1 cut(s) | 257 |
| AsiGI | ACCGGT | 1 cut(s) | 66 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 206, 486 |
| AspS9I | GGNCC | 1 cut(s) | 106 |
| AsuC2I | CCSGG | 1 cut(s) | 55 |
| AsuHPI | GGTGA | 4 cut(s) | 381, 461, 521, 578 |
| BamHI | GGATCC | 1 cut(s) | 302 |
| BanII | GRGCYC | 2 cut(s) | 76, 591 |
| BauI | CACGAG | 1 cut(s) | 234 |
| BbrPI | CACGTG | 1 cut(s) | 356 |
| BbsI | GAAGAC | 3 cut(s) | 199, 442, 539 |
| Bbv12I | GWGCWC | 1 cut(s) | 591 |
| BbvI | GCAGC | 1 cut(s) | 62 |
| BccI | CCATC | 1 cut(s) | 317 |
| BciT130I | CCWGG | 1 cut(s) | 473 |
| BcnI | CCSGG | 1 cut(s) | 55 |
| BcuI | ACTAGT | 1 cut(s) | 308 |
| BfaI | CTAG | 1 cut(s) | 309 |
| BglII | AGATCT | 1 cut(s) | 159 |
| BisI | GCNGC | 2 cut(s) | 51, 556 |
| BlpI | GCTNAGC | 1 cut(s) | 590 |
| BlsI | GCNGC | 2 cut(s) | 52, 557 |
| BmcAI | AGTACT | 1 cut(s) | 412 |
| Bme1390I | CCNGG | 2 cut(s) | 55, 473 |
| BmgT120I | GGNCC | 1 cut(s) | 106 |
| BmiI | GGNNCC | 3 cut(s) | 75, 218, 304 |
| BmrFI | CCNGG | 2 cut(s) | 55, 473 |
| BmsI | GCATC | 2 cut(s) | 51, 601 |
| BpiI | GAAGAC | 3 cut(s) | 199, 442, 539 |
| BpmI | CTGGAG | 1 cut(s) | 126 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 590 |
| BpuEI | CTTGAG | 3 cut(s) | 86, 212, 605 |
| BpuMI | CCSGG | 1 cut(s) | 55 |
| BsaAI | YACGTR | 1 cut(s) | 356 |
| BsaJI | CCNNGG | 2 cut(s) | 27, 543 |
| BsaWI | WCCGGW | 2 cut(s) | 66, 271 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 278, 506 |
| Bse118I | RCCGGY | 1 cut(s) | 66 |
| Bse1I | ACTGG | 1 cut(s) | 408 |
| BseBI | CCWGG | 1 cut(s) | 473 |
| BseDI | CCNNGG | 2 cut(s) | 27, 543 |
| BseGI | GGATG | 1 cut(s) | 42 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 278, 506 |
| BseMII | CTCAG | 1 cut(s) | 604 |
| BseNI | ACTGG | 1 cut(s) | 408 |
| BseRI | GAGGAG | 4 cut(s) | 44, 376, 474, 477 |
| BseXI | GCAGC | 1 cut(s) | 62 |
| BseYI | CCCAGC | 1 cut(s) | 15 |
| BshFI | GGCC | 1 cut(s) | 108 |
| BshTI | ACCGGT | 1 cut(s) | 66 |
| BsiHKAI | GWGCWC | 1 cut(s) | 591 |
| BsiSI | CCGG | 3 cut(s) | 54, 67, 272 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 278, 506 |
| BsnI | GGCC | 1 cut(s) | 108 |
| Bsp1286I | GDGCHC | 2 cut(s) | 76, 591 |
| Bsp143I | GATC | 7 cut(s) | 159, 189, 281, 289, 302, 329, 466 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 590 |
| BspACI | CCGC | 3 cut(s) | 83, 555, 564 |
| BspANI | GGCC | 1 cut(s) | 108 |
| BspCNI | CTCAG | 1 cut(s) | 603 |
| BspLI | GGNNCC | 3 cut(s) | 75, 218, 304 |
| BspPI | GGATC | 4 cut(s) | 289, 297, 310, 324 |
| BsrFI | RCCGGY | 1 cut(s) | 66 |
| BsrI | ACTGG | 1 cut(s) | 408 |
| BssAI | RCCGGY | 1 cut(s) | 66 |
| BssECI | CCNNGG | 2 cut(s) | 27, 543 |
| BssMI | GATC | 7 cut(s) | 159, 189, 281, 289, 302, 329, 466 |
| BssSI | CACGAG | 1 cut(s) | 234 |
| Bst2BI | CACGAG | 1 cut(s) | 234 |
| Bst2UI | CCWGG | 1 cut(s) | 473 |
| BstBAI | YACGTR | 1 cut(s) | 356 |
| BstDEI | CTNAG | 2 cut(s) | 92, 590 |
| BstF5I | GGATG | 1 cut(s) | 42 |
| BstKTI | GATC | 7 cut(s) | 162, 192, 284, 292, 305, 332, 469 |
| BstMBI | GATC | 7 cut(s) | 159, 189, 281, 289, 302, 329, 466 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 561 |
| BstNI | CCWGG | 1 cut(s) | 473 |
| BstSCI | CCNGG | 2 cut(s) | 53, 471 |
| BstV1I | GCAGC | 1 cut(s) | 62 |
| BstV2I | GAAGAC | 3 cut(s) | 199, 442, 539 |
| BstX2I | RGATCY | 4 cut(s) | 159, 281, 302, 329 |
| BstYI | RGATCY | 4 cut(s) | 159, 281, 302, 329 |
| BsuRI | GGCC | 1 cut(s) | 108 |
| BtsCI | GGATG | 1 cut(s) | 42 |
| Cfr10I | RCCGGY | 1 cut(s) | 66 |
| Cfr13I | GGNCC | 1 cut(s) | 106 |
| Csp6I | GTAC | 2 cut(s) | 133, 411 |
| CspAI | ACCGGT | 1 cut(s) | 66 |
| CviAII | CATG | 5 cut(s) | 448, 502, 506, 529, 619 |
| CviJI | RGCY | 9 cut(s) | 14, 53, 74, 108, 233, 363, 558, 589, 594 |
| CviKI_1 | RGCY | 9 cut(s) | 14, 53, 74, 108, 233, 363, 558, 589, 594 |
| CviQI | GTAC | 2 cut(s) | 133, 411 |
| DdeI | CTNAG | 2 cut(s) | 92, 590 |
| DpnI | GATC | 7 cut(s) | 161, 191, 283, 291, 304, 331, 468 |
| DpnII | GATC | 7 cut(s) | 159, 189, 281, 289, 302, 329, 466 |
| DraI | TTTAAA | 1 cut(s) | 342 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 203 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 203 |
| Ecl136II | GAGCTC | 1 cut(s) | 589 |
| Eco24I | GRGCYC | 2 cut(s) | 76, 591 |
| Eco53kI | GAGCTC | 1 cut(s) | 589 |
| Eco72I | CACGTG | 1 cut(s) | 356 |
| EcoICRI | GAGCTC | 1 cut(s) | 589 |
| EcoO109I | RGGNCCY | 1 cut(s) | 106 |
| EcoRII | CCWGG | 1 cut(s) | 471 |
| EcoT22I | ATGCAT | 1 cut(s) | 507 |
| EcoT38I | GRGCYC | 2 cut(s) | 76, 591 |
| FaeI | CATG | 5 cut(s) | 451, 505, 509, 532, 622 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 191, 223, 427, 459 |
| FatI | CATG | 5 cut(s) | 447, 501, 505, 528, 618 |
| Fnu4HI | GCNGC | 2 cut(s) | 51, 556 |
| FokI | GGATG | 1 cut(s) | 29 |
| FriOI | GRGCYC | 2 cut(s) | 76, 591 |
| Fsp4HI | GCNGC | 2 cut(s) | 51, 556 |
| FspBI | CTAG | 1 cut(s) | 309 |
| GluI | GCNGC | 2 cut(s) | 51, 556 |
| GsaI | CCCAGC | 1 cut(s) | 19 |
| GsuI | CTGGAG | 1 cut(s) | 126 |
| HaeIII | GGCC | 1 cut(s) | 108 |
| HapII | CCGG | 3 cut(s) | 54, 67, 272 |
| Hin1II | CATG | 5 cut(s) | 451, 505, 509, 532, 622 |
| HincII | GTYRAC | 1 cut(s) | 373 |
| HindII | GTYRAC | 1 cut(s) | 373 |
| HinfI | GANTC | 3 cut(s) | 96, 151, 569 |
| HpaII | CCGG | 3 cut(s) | 54, 67, 272 |
| HphI | GGTGA | 4 cut(s) | 381, 461, 521, 578 |
| Hpy166II | GTNNAC | 1 cut(s) | 373 |
| Hpy188I | TCNGA | 2 cut(s) | 264, 544 |
| Hpy188III | TCNNGA | 5 cut(s) | 143, 155, 220, 236, 287 |
| Hpy8I | GTNNAC | 1 cut(s) | 373 |
| HpyAV | CCTTC | 4 cut(s) | 176, 247, 403, 497 |
| HpyCH4IV | ACGT | 3 cut(s) | 204, 267, 355 |
| HpyCH4V | TGCA | 3 cut(s) | 175, 505, 614 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 561 |
| HpyF3I | CTNAG | 2 cut(s) | 92, 590 |
| HpySE526I | ACGT | 3 cut(s) | 204, 267, 355 |
| Hsp92II | CATG | 5 cut(s) | 451, 505, 509, 532, 622 |
| Kzo9I | GATC | 7 cut(s) | 159, 189, 281, 289, 302, 329, 466 |
| LmnI | GCTCC | 1 cut(s) | 79 |
| Lsp1109I | GCAGC | 1 cut(s) | 62 |
| LweI | GCATC | 2 cut(s) | 51, 601 |
| MaeI | CTAG | 1 cut(s) | 309 |
| MaeII | ACGT | 3 cut(s) | 204, 267, 355 |
| MaeIII | GTNAC | 3 cut(s) | 62, 351, 566 |
| MalI | GATC | 7 cut(s) | 161, 191, 283, 291, 304, 331, 468 |
| MboI | GATC | 7 cut(s) | 159, 189, 281, 289, 302, 329, 466 |
| MboII | GAAGA | 3 cut(s) | 199, 447, 544 |
| MflI | RGATCY | 4 cut(s) | 159, 281, 302, 329 |
| MhlI | GDGCHC | 2 cut(s) | 76, 591 |
| MluCI | AATT | 3 cut(s) | 5, 257, 295 |
| MlyI | GAGTC | 1 cut(s) | 563 |
| Mph1103I | ATGCAT | 1 cut(s) | 507 |
| MroXI | GAANNNNTTC | 2 cut(s) | 206, 486 |
| MseI | TTAA | 2 cut(s) | 129, 341 |
| MspI | CCGG | 3 cut(s) | 54, 67, 272 |
| MspR9I | CCNGG | 2 cut(s) | 55, 473 |
| MvaI | CCWGG | 1 cut(s) | 473 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 561 |
| NciI | CCSGG | 1 cut(s) | 55 |
| NdeII | GATC | 7 cut(s) | 159, 189, 281, 289, 302, 329, 466 |
| NlaIII | CATG | 5 cut(s) | 451, 505, 509, 532, 622 |
| NlaIV | GGNNCC | 3 cut(s) | 75, 218, 304 |
| NmuCI | GTSAC | 2 cut(s) | 351, 566 |
| NsiI | ATGCAT | 1 cut(s) | 507 |
| PdmI | GAANNNNTTC | 2 cut(s) | 206, 486 |
| PfeI | GAWTC | 2 cut(s) | 96, 151 |
| PinAI | ACCGGT | 1 cut(s) | 66 |
| PkrI | GCNGC | 2 cut(s) | 52, 557 |
| PleI | GAGTC | 1 cut(s) | 563 |
| PmaCI | CACGTG | 1 cut(s) | 356 |
| PmlI | CACGTG | 1 cut(s) | 356 |
| PpsI | GAGTC | 1 cut(s) | 563 |
| Ppu21I | YACGTR | 1 cut(s) | 356 |
| Psp124BI | GAGCTC | 1 cut(s) | 591 |
| Psp1406I | AACGTT | 1 cut(s) | 267 |
| Psp6I | CCWGG | 1 cut(s) | 471 |
| PspCI | CACGTG | 1 cut(s) | 356 |
| PspFI | CCCAGC | 1 cut(s) | 15 |
| PspGI | CCWGG | 1 cut(s) | 471 |
| PspN4I | GGNNCC | 3 cut(s) | 75, 218, 304 |
| PspPI | GGNCC | 1 cut(s) | 106 |
| PsuI | RGATCY | 4 cut(s) | 159, 281, 302, 329 |
| RsaI | GTAC | 2 cut(s) | 134, 412 |
| RsaNI | GTAC | 2 cut(s) | 133, 411 |
| SacI | GAGCTC | 1 cut(s) | 591 |
| SaqAI | TTAA | 2 cut(s) | 129, 341 |
| SatI | GCNGC | 2 cut(s) | 51, 556 |
| Sau3AI | GATC | 7 cut(s) | 159, 189, 281, 289, 302, 329, 466 |
| Sau96I | GGNCC | 1 cut(s) | 106 |
| ScaI | AGTACT | 1 cut(s) | 412 |
| SchI | GAGTC | 1 cut(s) | 563 |
| ScrFI | CCNGG | 2 cut(s) | 55, 473 |
| SduI | GDGCHC | 2 cut(s) | 76, 591 |
| SetI | ASST | 7 cut(s) | 207, 228, 270, 358, 419, 553, 591 |
| SfaNI | GCATC | 2 cut(s) | 51, 601 |
| SmlI | CTYRAG | 3 cut(s) | 101, 227, 584 |
| SmoI | CTYRAG | 3 cut(s) | 101, 227, 584 |
| SpeI | ACTAGT | 1 cut(s) | 308 |
| Sse9I | AATT | 3 cut(s) | 5, 257, 295 |
| SsiI | CCGC | 3 cut(s) | 83, 555, 564 |
| SspMI | CTAG | 1 cut(s) | 309 |
| SstI | GAGCTC | 1 cut(s) | 591 |
| StyD4I | CCNGG | 2 cut(s) | 53, 471 |
| TaiI | ACGT | 3 cut(s) | 207, 270, 358 |
| TaqI | TCGA | 2 cut(s) | 192, 288 |
| TasI | AATT | 3 cut(s) | 5, 257, 295 |
| TatI | WGTACW | 1 cut(s) | 410 |
| TauI | GCSGC | 1 cut(s) | 558 |
| TfiI | GAWTC | 2 cut(s) | 96, 151 |
| Tru1I | TTAA | 2 cut(s) | 129, 341 |
| Tru9I | TTAA | 2 cut(s) | 129, 341 |
| TseFI | GTSAC | 2 cut(s) | 351, 566 |
| TseI | GCWGC | 1 cut(s) | 50 |
| Tsp45I | GTSAC | 2 cut(s) | 351, 566 |
| TspDTI | ATGAA | 3 cut(s) | 158, 436, 545 |
| TspGWI | ACGGA | 1 cut(s) | 621 |
| XapI | RAATTY | 1 cut(s) | 257 |
| XmnI | GAANNNNTTC | 2 cut(s) | 206, 486 |
| XspI | CTAG | 1 cut(s) | 309 |
| ZrmI | AGTACT | 1 cut(s) | 412 |
| Zsp2I | ATGCAT | 1 cut(s) | 507 |