Homeodomain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Homeodomain | PF00046 | 30 - 90 | 1.5e-10 | Homeodomain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 227 |
| AciI | CCGC | 3 cut(s) | 107, 579, 588 |
| AclI | AACGTT | 1 cut(s) | 291 |
| AclWI | GGATC | 4 cut(s) | 313, 321, 334, 348 |
| AcsI | RAATTY | 1 cut(s) | 281 |
| AcvI | CACGTG | 1 cut(s) | 380 |
| AfaI | GTAC | 2 cut(s) | 158, 436 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 302, 530 |
| AflIII | ACRYGT | 1 cut(s) | 379 |
| AgeI | ACCGGT | 1 cut(s) | 90 |
| AgsI | TTSAA | 4 cut(s) | 179, 277, 421, 506 |
| AhlI | ACTAGT | 1 cut(s) | 332 |
| AjnI | CCWGG | 2 cut(s) | 77, 495 |
| AluBI | AGCT | 2 cut(s) | 613, 647 |
| AluI | AGCT | 2 cut(s) | 613, 647 |
| Alw21I | GWGCWC | 1 cut(s) | 615 |
| AlwI | GGATC | 4 cut(s) | 313, 321, 334, 348 |
| AoxI | GGCC | 1 cut(s) | 130 |
| ApeKI | GCWGC | 1 cut(s) | 74 |
| ApoI | RAATTY | 1 cut(s) | 281 |
| AsiGI | ACCGGT | 1 cut(s) | 90 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 510 |
| AspS9I | GGNCC | 1 cut(s) | 130 |
| AsuHPI | GGTGA | 4 cut(s) | 405, 485, 545, 602 |
| BamHI | GGATCC | 1 cut(s) | 326 |
| BanII | GRGCYC | 2 cut(s) | 100, 615 |
| BauI | CACGAG | 1 cut(s) | 258 |
| BbrPI | CACGTG | 1 cut(s) | 380 |
| BbsI | GAAGAC | 2 cut(s) | 223, 563 |
| Bbv12I | GWGCWC | 1 cut(s) | 615 |
| BbvI | GCAGC | 1 cut(s) | 86 |
| BccI | CCATC | 2 cut(s) | 50, 341 |
| BciT130I | CCWGG | 2 cut(s) | 79, 497 |
| BcuI | ACTAGT | 1 cut(s) | 332 |
| BfaI | CTAG | 1 cut(s) | 333 |
| BglII | AGATCT | 1 cut(s) | 183 |
| BisI | GCNGC | 2 cut(s) | 75, 580 |
| BlpI | GCTNAGC | 1 cut(s) | 614 |
| BlsI | GCNGC | 2 cut(s) | 76, 581 |
| BmcAI | AGTACT | 1 cut(s) | 436 |
| Bme1390I | CCNGG | 2 cut(s) | 79, 497 |
| BmgT120I | GGNCC | 1 cut(s) | 130 |
| BmiI | GGNNCC | 4 cut(s) | 6, 99, 242, 328 |
| BmrFI | CCNGG | 2 cut(s) | 79, 497 |
| BpiI | GAAGAC | 2 cut(s) | 223, 563 |
| BpmI | CTGGAG | 1 cut(s) | 150 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 614 |
| BpuEI | CTTGAG | 3 cut(s) | 110, 236, 629 |
| BsaAI | YACGTR | 1 cut(s) | 380 |
| BsaWI | WCCGGW | 2 cut(s) | 90, 295 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 302, 530 |
| Bse118I | RCCGGY | 1 cut(s) | 90 |
| Bse1I | ACTGG | 1 cut(s) | 432 |
| BseBI | CCWGG | 2 cut(s) | 79, 497 |
| BseGI | GGATG | 1 cut(s) | 61 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 302, 530 |
| BseMII | CTCAG | 2 cut(s) | 558, 628 |
| BseNI | ACTGG | 1 cut(s) | 432 |
| BseRI | GAGGAG | 3 cut(s) | 400, 498, 501 |
| BseXI | GCAGC | 1 cut(s) | 86 |
| BseYI | CCCAGC | 1 cut(s) | 39 |
| BshFI | GGCC | 1 cut(s) | 132 |
| BshTI | ACCGGT | 1 cut(s) | 90 |
| BsiHKAI | GWGCWC | 1 cut(s) | 615 |
| BsiSI | CCGG | 2 cut(s) | 91, 296 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 302, 530 |
| BsnI | GGCC | 1 cut(s) | 132 |
| Bsp1286I | GDGCHC | 2 cut(s) | 100, 615 |
| Bsp143I | GATC | 8 cut(s) | 183, 213, 305, 313, 326, 353, 361, 490 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 614 |
| BspACI | CCGC | 3 cut(s) | 107, 579, 588 |
| BspANI | GGCC | 1 cut(s) | 132 |
| BspCNI | CTCAG | 2 cut(s) | 559, 627 |
| BspLI | GGNNCC | 4 cut(s) | 6, 99, 242, 328 |
| BspPI | GGATC | 4 cut(s) | 313, 321, 334, 348 |
| BsrFI | RCCGGY | 1 cut(s) | 90 |
| BsrI | ACTGG | 1 cut(s) | 432 |
| BssAI | RCCGGY | 1 cut(s) | 90 |
| BssMI | GATC | 8 cut(s) | 183, 213, 305, 313, 326, 353, 361, 490 |
| BssSI | CACGAG | 1 cut(s) | 258 |
| Bst2BI | CACGAG | 1 cut(s) | 258 |
| Bst2UI | CCWGG | 2 cut(s) | 79, 497 |
| Bst4CI | ACNGT | 1 cut(s) | 204 |
| BstBAI | YACGTR | 1 cut(s) | 380 |
| BstDEI | CTNAG | 4 cut(s) | 116, 567, 614, 648 |
| BstF5I | GGATG | 1 cut(s) | 61 |
| BstKTI | GATC | 8 cut(s) | 186, 216, 308, 316, 329, 356, 364, 493 |
| BstMBI | GATC | 8 cut(s) | 183, 213, 305, 313, 326, 353, 361, 490 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 585, 644 |
| BstNI | CCWGG | 2 cut(s) | 79, 497 |
| BstSCI | CCNGG | 2 cut(s) | 77, 495 |
| BstV1I | GCAGC | 1 cut(s) | 86 |
| BstV2I | GAAGAC | 2 cut(s) | 223, 563 |
| BstX2I | RGATCY | 4 cut(s) | 183, 305, 326, 353 |
| BstYI | RGATCY | 4 cut(s) | 183, 305, 326, 353 |
| BsuRI | GGCC | 1 cut(s) | 132 |
| BtsCI | GGATG | 1 cut(s) | 61 |
| Cfr10I | RCCGGY | 1 cut(s) | 90 |
| Cfr13I | GGNCC | 1 cut(s) | 130 |
| Csp6I | GTAC | 2 cut(s) | 157, 435 |
| CspAI | ACCGGT | 1 cut(s) | 90 |
| CviAII | CATG | 4 cut(s) | 472, 526, 530, 553 |
| CviJI | RGCY | 9 cut(s) | 77, 98, 132, 257, 387, 582, 613, 618, 647 |
| CviKI_1 | RGCY | 9 cut(s) | 77, 98, 132, 257, 387, 582, 613, 618, 647 |
| CviQI | GTAC | 2 cut(s) | 157, 435 |
| DdeI | CTNAG | 4 cut(s) | 116, 567, 614, 648 |
| DpnI | GATC | 8 cut(s) | 185, 215, 307, 315, 328, 355, 363, 492 |
| DpnII | GATC | 8 cut(s) | 183, 213, 305, 313, 326, 353, 361, 490 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 227 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 227 |
| Ecl136II | GAGCTC | 1 cut(s) | 613 |
| Eco24I | GRGCYC | 2 cut(s) | 100, 615 |
| Eco53kI | GAGCTC | 1 cut(s) | 613 |
| Eco72I | CACGTG | 1 cut(s) | 380 |
| EcoICRI | GAGCTC | 1 cut(s) | 613 |
| EcoO109I | RGGNCCY | 1 cut(s) | 130 |
| EcoRII | CCWGG | 2 cut(s) | 77, 495 |
| EcoT22I | ATGCAT | 1 cut(s) | 531 |
| EcoT38I | GRGCYC | 2 cut(s) | 100, 615 |
| FaeI | CATG | 4 cut(s) | 475, 529, 533, 556 |
| FatI | CATG | 4 cut(s) | 471, 525, 529, 552 |
| Fnu4HI | GCNGC | 2 cut(s) | 75, 580 |
| FokI | GGATG | 1 cut(s) | 68 |
| FriOI | GRGCYC | 2 cut(s) | 100, 615 |
| Fsp4HI | GCNGC | 2 cut(s) | 75, 580 |
| FspBI | CTAG | 1 cut(s) | 333 |
| GluI | GCNGC | 2 cut(s) | 75, 580 |
| GsaI | CCCAGC | 1 cut(s) | 43 |
| GsuI | CTGGAG | 1 cut(s) | 150 |
| HaeIII | GGCC | 1 cut(s) | 132 |
| HapII | CCGG | 2 cut(s) | 91, 296 |
| Hin1II | CATG | 4 cut(s) | 475, 529, 533, 556 |
| HincII | GTYRAC | 1 cut(s) | 397 |
| HindII | GTYRAC | 1 cut(s) | 397 |
| HinfI | GANTC | 3 cut(s) | 120, 175, 593 |
| HpaII | CCGG | 2 cut(s) | 91, 296 |
| HphI | GGTGA | 4 cut(s) | 405, 485, 545, 602 |
| Hpy166II | GTNNAC | 1 cut(s) | 397 |
| Hpy188I | TCNGA | 3 cut(s) | 198, 288, 568 |
| Hpy188III | TCNNGA | 5 cut(s) | 167, 179, 244, 260, 311 |
| Hpy8I | GTNNAC | 1 cut(s) | 397 |
| HpyAV | CCTTC | 4 cut(s) | 200, 271, 427, 521 |
| HpyCH4III | ACNGT | 1 cut(s) | 204 |
| HpyCH4IV | ACGT | 3 cut(s) | 228, 291, 379 |
| HpyCH4V | TGCA | 3 cut(s) | 19, 529, 638 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 585, 644 |
| HpyF3I | CTNAG | 4 cut(s) | 116, 567, 614, 648 |
| HpySE526I | ACGT | 3 cut(s) | 228, 291, 379 |
| Hsp92II | CATG | 4 cut(s) | 475, 529, 533, 556 |
| Kzo9I | GATC | 8 cut(s) | 183, 213, 305, 313, 326, 353, 361, 490 |
| LmnI | GCTCC | 2 cut(s) | 28, 103 |
| Lsp1109I | GCAGC | 1 cut(s) | 86 |
| MaeI | CTAG | 1 cut(s) | 333 |
| MaeII | ACGT | 3 cut(s) | 228, 291, 379 |
| MaeIII | GTNAC | 2 cut(s) | 375, 590 |
| MalI | GATC | 8 cut(s) | 185, 215, 307, 315, 328, 355, 363, 492 |
| MboI | GATC | 8 cut(s) | 183, 213, 305, 313, 326, 353, 361, 490 |
| MboII | GAAGA | 2 cut(s) | 223, 568 |
| MflI | RGATCY | 4 cut(s) | 183, 305, 326, 353 |
| MhlI | GDGCHC | 2 cut(s) | 100, 615 |
| MluCI | AATT | 2 cut(s) | 281, 319 |
| MlyI | GAGTC | 1 cut(s) | 587 |
| Mph1103I | ATGCAT | 1 cut(s) | 531 |
| MroXI | GAANNNNTTC | 1 cut(s) | 510 |
| MseI | TTAA | 1 cut(s) | 153 |
| MspI | CCGG | 2 cut(s) | 91, 296 |
| MspR9I | CCNGG | 2 cut(s) | 79, 497 |
| MvaI | CCWGG | 2 cut(s) | 79, 497 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 585, 644 |
| NdeII | GATC | 8 cut(s) | 183, 213, 305, 313, 326, 353, 361, 490 |
| NlaIII | CATG | 4 cut(s) | 475, 529, 533, 556 |
| NlaIV | GGNNCC | 4 cut(s) | 6, 99, 242, 328 |
| NmuCI | GTSAC | 2 cut(s) | 375, 590 |
| NsiI | ATGCAT | 1 cut(s) | 531 |
| PdmI | GAANNNNTTC | 1 cut(s) | 510 |
| PfeI | GAWTC | 2 cut(s) | 120, 175 |
| PinAI | ACCGGT | 1 cut(s) | 90 |
| PkrI | GCNGC | 2 cut(s) | 76, 581 |
| PleI | GAGTC | 1 cut(s) | 587 |
| PmaCI | CACGTG | 1 cut(s) | 380 |
| PmlI | CACGTG | 1 cut(s) | 380 |
| PpsI | GAGTC | 1 cut(s) | 587 |
| Ppu21I | YACGTR | 1 cut(s) | 380 |
| Psp124BI | GAGCTC | 1 cut(s) | 615 |
| Psp1406I | AACGTT | 1 cut(s) | 291 |
| Psp6I | CCWGG | 2 cut(s) | 77, 495 |
| PspCI | CACGTG | 1 cut(s) | 380 |
| PspFI | CCCAGC | 1 cut(s) | 39 |
| PspGI | CCWGG | 2 cut(s) | 77, 495 |
| PspN4I | GGNNCC | 4 cut(s) | 6, 99, 242, 328 |
| PspPI | GGNCC | 1 cut(s) | 130 |
| PsuI | RGATCY | 4 cut(s) | 183, 305, 326, 353 |
| RsaI | GTAC | 2 cut(s) | 158, 436 |
| RsaNI | GTAC | 2 cut(s) | 157, 435 |
| SacI | GAGCTC | 1 cut(s) | 615 |
| SaqAI | TTAA | 1 cut(s) | 153 |
| SatI | GCNGC | 2 cut(s) | 75, 580 |
| Sau3AI | GATC | 8 cut(s) | 183, 213, 305, 313, 326, 353, 361, 490 |
| Sau96I | GGNCC | 1 cut(s) | 130 |
| ScaI | AGTACT | 1 cut(s) | 436 |
| SchI | GAGTC | 1 cut(s) | 587 |
| ScrFI | CCNGG | 2 cut(s) | 79, 497 |
| SduI | GDGCHC | 2 cut(s) | 100, 615 |
| SetI | ASST | 8 cut(s) | 231, 252, 294, 382, 443, 577, 615, 649 |
| SmlI | CTYRAG | 3 cut(s) | 125, 251, 608 |
| SmoI | CTYRAG | 3 cut(s) | 125, 251, 608 |
| SpeI | ACTAGT | 1 cut(s) | 332 |
| Sse9I | AATT | 2 cut(s) | 281, 319 |
| SsiI | CCGC | 3 cut(s) | 107, 579, 588 |
| SspMI | CTAG | 1 cut(s) | 333 |
| SstI | GAGCTC | 1 cut(s) | 615 |
| StyD4I | CCNGG | 2 cut(s) | 77, 495 |
| TaaI | ACNGT | 1 cut(s) | 204 |
| TaiI | ACGT | 3 cut(s) | 231, 294, 382 |
| TaqI | TCGA | 3 cut(s) | 51, 216, 312 |
| TasI | AATT | 2 cut(s) | 281, 319 |
| TatI | WGTACW | 1 cut(s) | 434 |
| TauI | GCSGC | 1 cut(s) | 582 |
| TfiI | GAWTC | 2 cut(s) | 120, 175 |
| Tru1I | TTAA | 1 cut(s) | 153 |
| Tru9I | TTAA | 1 cut(s) | 153 |
| TseFI | GTSAC | 2 cut(s) | 375, 590 |
| TseI | GCWGC | 1 cut(s) | 74 |
| Tsp45I | GTSAC | 2 cut(s) | 375, 590 |
| TspDTI | ATGAA | 3 cut(s) | 182, 460, 569 |
| TspGWI | ACGGA | 1 cut(s) | 645 |
| XapI | RAATTY | 1 cut(s) | 281 |
| XmnI | GAANNNNTTC | 1 cut(s) | 510 |
| XspI | CTAG | 1 cut(s) | 333 |
| ZrmI | AGTACT | 1 cut(s) | 436 |
| Zsp2I | ATGCAT | 1 cut(s) | 531 |