Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000180

Physical Location & Seq

Genomic Coordinates Forward (+)

35786632 .. 35787066

Gene Structure 435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ49512

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGAATTACAAGCCCAGCAACCAACCGAGGAGGGAGGAAGCATCCAAGCAGCCGGGAGTAGTAACCGGTGGGCTCCCACACCGCCTCAACTAAGAATCCTCAAGGGCCTTTACTATGATAAGGGTTTTAAGTACCCAACTCCAGAGCAGATTCAAGAGATCTGCCTTCATCTGAAACAGTATGGGCAGATCGAGGACAAAAACGTTTTCTTTTGGTTCCAGAACCTCAAGGCTCGTGAGAGGCAGAAGTTGAAGGAATTTCGGAACGTTCCGGTTGGTGGATCTCTCGATCTCAATTTTGGATCCACTAGTTCTACTGATGATGGTAGATCCATTGATCTAAACTTTGGGTCACGTGTCGGCTATGGTGTTGACCCATATTCCTCCTCACCCTTCAACACTAATACCAGTACTACCTCCTTTGGCACAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

144

Amino Acids

16.12

Weight (kDa)

6.58

Isoelectric Point (pI)

48.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	22 - 82	5.6e-11	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000180)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c19g0499991 RchiOBHm_Chr0c19g0500021 RchiOBHm_Chr0c19g0500131 RchiOBHm_Chr0c31g0501321 RchiOBHm_Chr0c31g0501441 RchiOBHm_Chr1g0365611 RchiOBHm_Chr1g0366061 RchiOBHm_Chr1g0367951 RchiOBHm_Chr1g0369471 RchiOBHm_Chr1g0377271 RchiOBHm_Chr1g0379021 RchiOBHm_Chr1g0379461 RchiOBHm_Chr1g0381431 RchiOBHm_Chr1g0383551 RchiOBHm_Chr1g0383621 RchiOBHm_Chr2g0120951 RchiOBHm_Chr2g0121321 RchiOBHm_Chr2g0121381 RchiOBHm_Chr2g0121801 RchiOBHm_Chr2g0121861 RchiOBHm_Chr2g0122211 RchiOBHm_Chr2g0122471 RchiOBHm_Chr2g0122511 RchiOBHm_Chr2g0122751 RchiOBHm_Chr2g0123361 RchiOBHm_Chr2g0124071 RchiOBHm_Chr2g0124341 RchiOBHm_Chr2g0124361 RchiOBHm_Chr2g0124511 RchiOBHm_Chr2g0124641 RchiOBHm_Chr2g0125051 RchiOBHm_Chr2g0125111 RchiOBHm_Chr2g0125641 RchiOBHm_Chr2g0125871 RchiOBHm_Chr2g0125901 RchiOBHm_Chr2g0126011 RchiOBHm_Chr2g0126291 RchiOBHm_Chr2g0126341 RchiOBHm_Chr2g0126611 RchiOBHm_Chr2g0126671 RchiOBHm_Chr2g0126701 RchiOBHm_Chr2g0127021 RchiOBHm_Chr2g0127071 RchiOBHm_Chr2g0127361 RchiOBHm_Chr2g0127691 RchiOBHm_Chr2g0128041 RchiOBHm_Chr2g0128051 RchiOBHm_Chr2g0128061 RchiOBHm_Chr2g0128141 RchiOBHm_Chr2g0128171 RchiOBHm_Chr2g0128181 RchiOBHm_Chr2g0128551 RchiOBHm_Chr2g0128991 RchiOBHm_Chr2g0130061 RchiOBHm_Chr2g0130391 RchiOBHm_Chr2g0130631 RchiOBHm_Chr2g0130921 RchiOBHm_Chr2g0132731 RchiOBHm_Chr2g0133461 RchiOBHm_Chr2g0133921 RchiOBHm_Chr2g0134031 RchiOBHm_Chr2g0134281 RchiOBHm_Chr2g0134351 RchiOBHm_Chr2g0135501 RchiOBHm_Chr2g0135821 RchiOBHm_Chr2g0135931 RchiOBHm_Chr2g0137501 RchiOBHm_Chr2g0139141 RchiOBHm_Chr2g0139511 RchiOBHm_Chr2g0142411 RchiOBHm_Chr2g0143261 RchiOBHm_Chr2g0144171 RchiOBHm_Chr2g0144741 RchiOBHm_Chr2g0144841 RchiOBHm_Chr2g0145021 RchiOBHm_Chr2g0145831 RchiOBHm_Chr2g0145881 RchiOBHm_Chr2g0146081 RchiOBHm_Chr2g0146141 RchiOBHm_Chr2g0146671 RchiOBHm_Chr2g0149001 RchiOBHm_Chr2g0151811 RchiOBHm_Chr2g0151821 RchiOBHm_Chr2g0151831 RchiOBHm_Chr2g0152051 RchiOBHm_Chr2g0154791 RchiOBHm_Chr2g0155541 RchiOBHm_Chr2g0160791 RchiOBHm_Chr2g0161631 RchiOBHm_Chr2g0162151 RchiOBHm_Chr2g0162751 RchiOBHm_Chr2g0166561 RchiOBHm_Chr2g0166751 RchiOBHm_Chr2g0168891 RchiOBHm_Chr2g0170211 RchiOBHm_Chr2g0170781 RchiOBHm_Chr2g0172831 RchiOBHm_Chr2g0174791 RchiOBHm_Chr3g0448081 RchiOBHm_Chr3g0449761 RchiOBHm_Chr3g0453291 RchiOBHm_Chr3g0456271 RchiOBHm_Chr3g0456461 RchiOBHm_Chr3g0458351 RchiOBHm_Chr3g0461411 RchiOBHm_Chr3g0461511 RchiOBHm_Chr3g0463871 RchiOBHm_Chr3g0467841 RchiOBHm_Chr3g0470081 RchiOBHm_Chr3g0470571 RchiOBHm_Chr7g0187061 RchiOBHm_Chr7g0187461 RchiOBHm_Chr7g0187681 RchiOBHm_Chr7g0189901 RchiOBHm_Chr7g0190271 RchiOBHm_Chr7g0193451 RchiOBHm_Chr7g0194081 RchiOBHm_Chr7g0195771 RchiOBHm_Chr7g0196301 RchiOBHm_Chr7g0196911
rosa_multiflora	Rmu_sc0000236.1_g000047 Rmu_sc0000284.1_g000007 Rmu_sc0000288.1_g000006 Rmu_sc0000507.1_g000017 Rmu_sc0000580.1_g000015 Rmu_sc0000663.1_g000011 Rmu_sc0000675.1_g000024 Rmu_sc0000693.1_g000072 Rmu_sc0000779.1_g000005 Rmu_sc0000851.1_g000015 Rmu_sc0000962.1_g000001 Rmu_sc0001493.1_g000055 Rmu_sc0001669.1_g000025 Rmu_sc0001891.1_g000051 Rmu_sc0001926.1_g000007 Rmu_sc0002082.1_g000025 Rmu_sc0002141.1_g000001 Rmu_sc0002141.1_g000004 Rmu_sc0002414.1_g000012 Rmu_sc0002557.1_g000022 Rmu_sc0002709.1_g000038 Rmu_sc0002897.1_g000004 Rmu_sc0002934.1_g000055 Rmu_sc0003692.1_g000017 Rmu_sc0004283.1_g000068 Rmu_sc0004598.1_g000010 Rmu_sc0004614.1_g000004 Rmu_sc0004805.1_g000006 Rmu_sc0005142.1_g000041 Rmu_sc0005777.1_g000001 Rmu_sc0006420.1_g000019 Rmu_sc0006803.1_g000016 Rmu_sc0007034.1_g000015 Rmu_sc0008079.1_g000017 Rmu_sc0008148.1_g000040 Rmu_sc0008608.1_g000007 Rmu_sc0008675.1_g000001 Rmu_sc0009663.1_g000001 Rmu_sc0010188.1_g000003 Rmu_sc0010739.1_g000005 Rmu_sc0016265.1_g000001 Rmu_sc0031757.1_g000001 Rmu_ssc0000087.1_g000024 Rmu_ssc0000438.1_g000029
rosa_roxburghii	Rroxscaffold_1G00003350
rosa_rugosa	Rorug03G0248400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	83
AclI	AACGTT	2 cut(s)	204, 267
AclWI	GGATC	4 cut(s)	289, 297, 310, 324
AcsI	RAATTY	1 cut(s)	257
AcvI	CACGTG	1 cut(s)	356
AfaI	GTAC	2 cut(s)	134, 412
AfiI	CCNNNNNNNGG	1 cut(s)	278
AflIII	ACRYGT	1 cut(s)	355
AgeI	ACCGGT	1 cut(s)	66
AgsI	TTSAA	3 cut(s)	155, 253, 397
AhlI	ACTAGT	1 cut(s)	308
AlwI	GGATC	4 cut(s)	289, 297, 310, 324
AoxI	GGCC	1 cut(s)	106
ApeKI	GCWGC	1 cut(s)	50
ApoI	RAATTY	1 cut(s)	257
AsiGI	ACCGGT	1 cut(s)	66
AspS9I	GGNCC	1 cut(s)	106
AsuC2I	CCSGG	1 cut(s)	55
AsuHPI	GGTGA	1 cut(s)	381
BamHI	GGATCC	1 cut(s)	302
BanII	GRGCYC	1 cut(s)	76
BauI	CACGAG	1 cut(s)	234
BbrPI	CACGTG	1 cut(s)	356
BbvI	GCAGC	1 cut(s)	62
BccI	CCATC	1 cut(s)	317
BcnI	CCSGG	1 cut(s)	55
BcuI	ACTAGT	1 cut(s)	308
BfaI	CTAG	1 cut(s)	309
BglII	AGATCT	1 cut(s)	159
BisI	GCNGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	52
BmcAI	AGTACT	1 cut(s)	412
Bme1390I	CCNGG	1 cut(s)	55
BmgT120I	GGNCC	1 cut(s)	106
BmiI	GGNNCC	3 cut(s)	75, 218, 304
BmrFI	CCNGG	1 cut(s)	55
BmsI	GCATC	1 cut(s)	51
BpmI	CTGGAG	1 cut(s)	126
BpuEI	CTTGAG	2 cut(s)	86, 212
BpuMI	CCSGG	1 cut(s)	55
BsaAI	YACGTR	1 cut(s)	356
BsaJI	CCNNGG	1 cut(s)	27
BsaWI	WCCGGW	2 cut(s)	66, 271
Bsc4I	CCNNNNNNNGG	1 cut(s)	278
Bse118I	RCCGGY	1 cut(s)	66
Bse1I	ACTGG	1 cut(s)	408
BseDI	CCNNGG	1 cut(s)	27
BseGI	GGATG	1 cut(s)	42
BseLI	CCNNNNNNNGG	1 cut(s)	278
BseNI	ACTGG	1 cut(s)	408
BseRI	GAGGAG	2 cut(s)	44, 376
BseXI	GCAGC	1 cut(s)	62
BseYI	CCCAGC	1 cut(s)	15
BshFI	GGCC	1 cut(s)	108
BshTI	ACCGGT	1 cut(s)	66
BsiSI	CCGG	3 cut(s)	54, 67, 272
BslI	CCNNNNNNNGG	1 cut(s)	278
BsnI	GGCC	1 cut(s)	108
Bsp1286I	GDGCHC	1 cut(s)	76
Bsp143I	GATC	7 cut(s)	159, 189, 281, 289, 302, 329, 337
BspACI	CCGC	1 cut(s)	83
BspANI	GGCC	1 cut(s)	108
BspLI	GGNNCC	3 cut(s)	75, 218, 304
BspPI	GGATC	4 cut(s)	289, 297, 310, 324
BsrFI	RCCGGY	1 cut(s)	66
BsrI	ACTGG	1 cut(s)	408
BssAI	RCCGGY	1 cut(s)	66
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	7 cut(s)	159, 189, 281, 289, 302, 329, 337
BssSI	CACGAG	1 cut(s)	234
Bst2BI	CACGAG	1 cut(s)	234
Bst4CI	ACNGT	1 cut(s)	180
BstBAI	YACGTR	1 cut(s)	356
BstDEI	CTNAG	1 cut(s)	92
BstF5I	GGATG	1 cut(s)	42
BstKTI	GATC	7 cut(s)	162, 192, 284, 292, 305, 332, 340
BstMBI	GATC	7 cut(s)	159, 189, 281, 289, 302, 329, 337
BstSCI	CCNGG	1 cut(s)	53
BstV1I	GCAGC	1 cut(s)	62
BstX2I	RGATCY	4 cut(s)	159, 281, 302, 329
BstYI	RGATCY	4 cut(s)	159, 281, 302, 329
BsuRI	GGCC	1 cut(s)	108
BtsCI	GGATG	1 cut(s)	42
Cfr10I	RCCGGY	1 cut(s)	66
Cfr13I	GGNCC	1 cut(s)	106
Csp6I	GTAC	2 cut(s)	133, 411
CspAI	ACCGGT	1 cut(s)	66
CviAII	CATG	1 cut(s)	432
CviJI	RGCY	6 cut(s)	14, 53, 74, 108, 233, 363
CviKI_1	RGCY	6 cut(s)	14, 53, 74, 108, 233, 363
CviQI	GTAC	2 cut(s)	133, 411
DdeI	CTNAG	1 cut(s)	92
DpnI	GATC	7 cut(s)	161, 191, 283, 291, 304, 331, 339
DpnII	GATC	7 cut(s)	159, 189, 281, 289, 302, 329, 337
Eco24I	GRGCYC	1 cut(s)	76
Eco72I	CACGTG	1 cut(s)	356
EcoO109I	RGGNCCY	1 cut(s)	106
EcoT38I	GRGCYC	1 cut(s)	76
FaeI	CATG	1 cut(s)	435
FaiI	YATR	5 cut(s)	117, 183, 366, 379, 433
FatI	CATG	1 cut(s)	431
Fnu4HI	GCNGC	1 cut(s)	51
FokI	GGATG	1 cut(s)	29
FriOI	GRGCYC	1 cut(s)	76
Fsp4HI	GCNGC	1 cut(s)	51
FspBI	CTAG	1 cut(s)	309
GluI	GCNGC	1 cut(s)	51
GsaI	CCCAGC	1 cut(s)	19
GsuI	CTGGAG	1 cut(s)	126
HaeIII	GGCC	1 cut(s)	108
HapII	CCGG	3 cut(s)	54, 67, 272
Hin1II	CATG	1 cut(s)	435
HincII	GTYRAC	1 cut(s)	373
HindII	GTYRAC	1 cut(s)	373
HinfI	GANTC	2 cut(s)	96, 151
HpaII	CCGG	3 cut(s)	54, 67, 272
HphI	GGTGA	1 cut(s)	381
Hpy166II	GTNNAC	1 cut(s)	373
Hpy188I	TCNGA	2 cut(s)	174, 264
Hpy188III	TCNNGA	5 cut(s)	143, 155, 220, 236, 287
Hpy8I	GTNNAC	1 cut(s)	373
HpyAV	CCTTC	3 cut(s)	176, 247, 403
HpyCH4III	ACNGT	1 cut(s)	180
HpyCH4IV	ACGT	3 cut(s)	204, 267, 355
HpyF3I	CTNAG	1 cut(s)	92
HpySE526I	ACGT	3 cut(s)	204, 267, 355
Hsp92II	CATG	1 cut(s)	435
Kzo9I	GATC	7 cut(s)	159, 189, 281, 289, 302, 329, 337
LmnI	GCTCC	1 cut(s)	79
LpnPI	CCDG	7 cut(s)	29, 67, 80, 156, 233, 285, 421
Lsp1109I	GCAGC	1 cut(s)	62
LweI	GCATC	1 cut(s)	51
MaeI	CTAG	1 cut(s)	309
MaeII	ACGT	3 cut(s)	204, 267, 355
MaeIII	GTNAC	2 cut(s)	62, 351
MalI	GATC	7 cut(s)	161, 191, 283, 291, 304, 331, 339
MboI	GATC	7 cut(s)	159, 189, 281, 289, 302, 329, 337
MflI	RGATCY	4 cut(s)	159, 281, 302, 329
MhlI	GDGCHC	1 cut(s)	76
MluCI	AATT	3 cut(s)	5, 257, 295
MseI	TTAA	1 cut(s)	129
MspI	CCGG	3 cut(s)	54, 67, 272
MspR9I	CCNGG	1 cut(s)	55
NciI	CCSGG	1 cut(s)	55
NdeII	GATC	7 cut(s)	159, 189, 281, 289, 302, 329, 337
NlaIII	CATG	1 cut(s)	435
NlaIV	GGNNCC	3 cut(s)	75, 218, 304
NmuCI	GTSAC	1 cut(s)	351
PfeI	GAWTC	2 cut(s)	96, 151
PinAI	ACCGGT	1 cut(s)	66
PkrI	GCNGC	1 cut(s)	52
PmaCI	CACGTG	1 cut(s)	356
PmlI	CACGTG	1 cut(s)	356
Ppu21I	YACGTR	1 cut(s)	356
Psp1406I	AACGTT	2 cut(s)	204, 267
PspCI	CACGTG	1 cut(s)	356
PspFI	CCCAGC	1 cut(s)	15
PspN4I	GGNNCC	3 cut(s)	75, 218, 304
PspPI	GGNCC	1 cut(s)	106
PsuI	RGATCY	4 cut(s)	159, 281, 302, 329
RsaI	GTAC	2 cut(s)	134, 412
RsaNI	GTAC	2 cut(s)	133, 411
SaqAI	TTAA	1 cut(s)	129
SatI	GCNGC	1 cut(s)	51
Sau3AI	GATC	7 cut(s)	159, 189, 281, 289, 302, 329, 337
Sau96I	GGNCC	1 cut(s)	106
ScaI	AGTACT	1 cut(s)	412
ScrFI	CCNGG	1 cut(s)	55
SduI	GDGCHC	1 cut(s)	76
SetI	ASST	5 cut(s)	207, 228, 270, 358, 419
SfaNI	GCATC	1 cut(s)	51
SmlI	CTYRAG	2 cut(s)	101, 227
SmoI	CTYRAG	2 cut(s)	101, 227
SpeI	ACTAGT	1 cut(s)	308
Sse9I	AATT	3 cut(s)	5, 257, 295
SsiI	CCGC	1 cut(s)	83
SspMI	CTAG	1 cut(s)	309
StyD4I	CCNGG	1 cut(s)	53
TaaI	ACNGT	1 cut(s)	180
TaiI	ACGT	3 cut(s)	207, 270, 358
TaqI	TCGA	2 cut(s)	192, 288
TasI	AATT	3 cut(s)	5, 257, 295
TatI	WGTACW	1 cut(s)	410
TfiI	GAWTC	2 cut(s)	96, 151
Tru1I	TTAA	1 cut(s)	129
Tru9I	TTAA	1 cut(s)	129
TseFI	GTSAC	1 cut(s)	351
TseI	GCWGC	1 cut(s)	50
Tsp45I	GTSAC	1 cut(s)	351
TspDTI	ATGAA	1 cut(s)	158
XapI	RAATTY	1 cut(s)	257
XspI	CTAG	1 cut(s)	309
ZrmI	AGTACT	1 cut(s)	412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.