Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002082.1

Orthogroup ID

OG0000180

Physical Location & Seq

Genomic Coordinates Forward (+)

98248 .. 98916

Gene Structure 669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002082.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

atggaaccacgaactctgcaactaatggagctacaaacccaacaacaaatcgaggatgaaggaaacaaccaagcagccgggagtagtgccaacacgcctatcaggcagaccaataaccggtggactcccacaccagatcaactaagaatcctccaggagctttactatgacaaggtgcttcagtacccaactccagagaagattcaagagatctgccttcatctgcaacagtatgggcagatcgaggacaagaacgtcttcttttggttccagaacctcaaggctcgagagaggcagaagttgaagttaattcagaacgttcgggttggtggatctcccgatctcaattttggatccactagttctactgatgatggtaggtccattgatctaaactttggttccactggttctactggtactgatggatctattgatctaaattttgggtcatgtgtcggctatggtgttgacccatattcctcctcacccttcaacactaatactagtactacctcctttggcacaacaggaggacaaacttccatggatcaacgaggaggagatcaccaggaggttgaaactcttcctctgttcccagtgcaaggtgagaacgtccttggtaacccgaagactacttccgatgaaggtagcgcatatggttactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

222

Amino Acids

24.55

Weight (kDa)

4.56

Isoelectric Point (pI)

37.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000180)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c19g0499991 RchiOBHm_Chr0c19g0500021 RchiOBHm_Chr0c19g0500131 RchiOBHm_Chr0c31g0501321 RchiOBHm_Chr0c31g0501441 RchiOBHm_Chr1g0365611 RchiOBHm_Chr1g0366061 RchiOBHm_Chr1g0367951 RchiOBHm_Chr1g0369471 RchiOBHm_Chr1g0377271 RchiOBHm_Chr1g0379021 RchiOBHm_Chr1g0379461 RchiOBHm_Chr1g0381431 RchiOBHm_Chr1g0383551 RchiOBHm_Chr1g0383621 RchiOBHm_Chr2g0120951 RchiOBHm_Chr2g0121321 RchiOBHm_Chr2g0121381 RchiOBHm_Chr2g0121801 RchiOBHm_Chr2g0121861 RchiOBHm_Chr2g0122211 RchiOBHm_Chr2g0122471 RchiOBHm_Chr2g0122511 RchiOBHm_Chr2g0122751 RchiOBHm_Chr2g0123361 RchiOBHm_Chr2g0124071 RchiOBHm_Chr2g0124341 RchiOBHm_Chr2g0124361 RchiOBHm_Chr2g0124511 RchiOBHm_Chr2g0124641 RchiOBHm_Chr2g0125051 RchiOBHm_Chr2g0125111 RchiOBHm_Chr2g0125641 RchiOBHm_Chr2g0125871 RchiOBHm_Chr2g0125901 RchiOBHm_Chr2g0126011 RchiOBHm_Chr2g0126291 RchiOBHm_Chr2g0126341 RchiOBHm_Chr2g0126611 RchiOBHm_Chr2g0126671 RchiOBHm_Chr2g0126701 RchiOBHm_Chr2g0127021 RchiOBHm_Chr2g0127071 RchiOBHm_Chr2g0127361 RchiOBHm_Chr2g0127691 RchiOBHm_Chr2g0128041 RchiOBHm_Chr2g0128051 RchiOBHm_Chr2g0128061 RchiOBHm_Chr2g0128141 RchiOBHm_Chr2g0128171 RchiOBHm_Chr2g0128181 RchiOBHm_Chr2g0128551 RchiOBHm_Chr2g0128991 RchiOBHm_Chr2g0130061 RchiOBHm_Chr2g0130391 RchiOBHm_Chr2g0130631 RchiOBHm_Chr2g0130921 RchiOBHm_Chr2g0132731 RchiOBHm_Chr2g0133461 RchiOBHm_Chr2g0133921 RchiOBHm_Chr2g0134031 RchiOBHm_Chr2g0134281 RchiOBHm_Chr2g0134351 RchiOBHm_Chr2g0135501 RchiOBHm_Chr2g0135821 RchiOBHm_Chr2g0135931 RchiOBHm_Chr2g0137501 RchiOBHm_Chr2g0139141 RchiOBHm_Chr2g0139511 RchiOBHm_Chr2g0142411 RchiOBHm_Chr2g0143261 RchiOBHm_Chr2g0144171 RchiOBHm_Chr2g0144741 RchiOBHm_Chr2g0144841 RchiOBHm_Chr2g0145021 RchiOBHm_Chr2g0145831 RchiOBHm_Chr2g0145881 RchiOBHm_Chr2g0146081 RchiOBHm_Chr2g0146141 RchiOBHm_Chr2g0146671 RchiOBHm_Chr2g0149001 RchiOBHm_Chr2g0151811 RchiOBHm_Chr2g0151821 RchiOBHm_Chr2g0151831 RchiOBHm_Chr2g0152051 RchiOBHm_Chr2g0154791 RchiOBHm_Chr2g0155541 RchiOBHm_Chr2g0160791 RchiOBHm_Chr2g0161631 RchiOBHm_Chr2g0162151 RchiOBHm_Chr2g0162751 RchiOBHm_Chr2g0166561 RchiOBHm_Chr2g0166751 RchiOBHm_Chr2g0168891 RchiOBHm_Chr2g0170211 RchiOBHm_Chr2g0170781 RchiOBHm_Chr2g0172831 RchiOBHm_Chr2g0174791 RchiOBHm_Chr3g0448081 RchiOBHm_Chr3g0449761 RchiOBHm_Chr3g0453291 RchiOBHm_Chr3g0456271 RchiOBHm_Chr3g0456461 RchiOBHm_Chr3g0458351 RchiOBHm_Chr3g0461411 RchiOBHm_Chr3g0461511 RchiOBHm_Chr3g0463871 RchiOBHm_Chr3g0467841 RchiOBHm_Chr3g0470081 RchiOBHm_Chr3g0470571 RchiOBHm_Chr7g0187061 RchiOBHm_Chr7g0187461 RchiOBHm_Chr7g0187681 RchiOBHm_Chr7g0189901 RchiOBHm_Chr7g0190271 RchiOBHm_Chr7g0193451 RchiOBHm_Chr7g0194081 RchiOBHm_Chr7g0195771 RchiOBHm_Chr7g0196301 RchiOBHm_Chr7g0196911
rosa_multiflora	Rmu_sc0000236.1_g000047 Rmu_sc0000284.1_g000007 Rmu_sc0000288.1_g000006 Rmu_sc0000507.1_g000017 Rmu_sc0000580.1_g000015 Rmu_sc0000663.1_g000011 Rmu_sc0000675.1_g000024 Rmu_sc0000693.1_g000072 Rmu_sc0000779.1_g000005 Rmu_sc0000851.1_g000015 Rmu_sc0000962.1_g000001 Rmu_sc0001493.1_g000055 Rmu_sc0001669.1_g000025 Rmu_sc0001891.1_g000051 Rmu_sc0001926.1_g000007 Rmu_sc0002082.1_g000025 Rmu_sc0002141.1_g000001 Rmu_sc0002141.1_g000004 Rmu_sc0002414.1_g000012 Rmu_sc0002557.1_g000022 Rmu_sc0002709.1_g000038 Rmu_sc0002897.1_g000004 Rmu_sc0002934.1_g000055 Rmu_sc0003692.1_g000017 Rmu_sc0004283.1_g000068 Rmu_sc0004598.1_g000010 Rmu_sc0004614.1_g000004 Rmu_sc0004805.1_g000006 Rmu_sc0005142.1_g000041 Rmu_sc0005777.1_g000001 Rmu_sc0006420.1_g000019 Rmu_sc0006803.1_g000016 Rmu_sc0007034.1_g000015 Rmu_sc0008079.1_g000017 Rmu_sc0008148.1_g000040 Rmu_sc0008608.1_g000007 Rmu_sc0008675.1_g000001 Rmu_sc0009663.1_g000001 Rmu_sc0010188.1_g000003 Rmu_sc0010739.1_g000005 Rmu_sc0016265.1_g000001 Rmu_sc0031757.1_g000001 Rmu_ssc0000087.1_g000024 Rmu_ssc0000438.1_g000029
rosa_roxburghii	Rroxscaffold_1G00003350
rosa_rugosa	Rorug03G0248400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	254
AclI	AACGTT	1 cut(s)	318
AclWI	GGATC	5 cut(s)	340, 348, 361, 436, 558
AcsI	RAATTY	1 cut(s)	442
AcuI	CTGAAG	1 cut(s)	164
AfaI	GTAC	3 cut(s)	185, 421, 511
AfiI	CCNNNNNNNGG	2 cut(s)	117, 605
AgeI	ACCGGT	1 cut(s)	117
AgsI	TTSAA	4 cut(s)	206, 304, 496, 581
AhlI	ACTAGT	2 cut(s)	359, 506
AjnI	CCWGG	2 cut(s)	153, 570
AluBI	AGCT	2 cut(s)	31, 160
AluI	AGCT	2 cut(s)	31, 160
AlwI	GGATC	5 cut(s)	340, 348, 361, 436, 558
Ama87I	CYCGRG	1 cut(s)	285
ApeKI	GCWGC	1 cut(s)	74
ApoI	RAATTY	1 cut(s)	442
AsiGI	ACCGGT	1 cut(s)	117
Asp700I	GAANNNNTTC	2 cut(s)	257, 585
AspLEI	GCGC	1 cut(s)	656
AspS9I	GGNCC	1 cut(s)	381
AsuC2I	CCSGG	1 cut(s)	79
AsuHPI	GGTGA	3 cut(s)	480, 560, 620
AvaI	CYCGRG	1 cut(s)	285
AvaII	GGWCC	1 cut(s)	381
BamHI	GGATCC	1 cut(s)	353
BbsI	GAAGAC	2 cut(s)	250, 638
BbvI	GCAGC	1 cut(s)	86
BccI	CCATC	2 cut(s)	368, 419
BciT130I	CCWGG	2 cut(s)	155, 572
BcnI	CCSGG	1 cut(s)	79
BcuI	ACTAGT	2 cut(s)	359, 506
BfaI	CTAG	2 cut(s)	360, 507
BglI	GCCNNNNNGGC	1 cut(s)	103
BglII	AGATCT	1 cut(s)	210
BisI	GCNGC	1 cut(s)	75
BlsI	GCNGC	1 cut(s)	76
BmcAI	AGTACT	1 cut(s)	511
Bme1390I	CCNGG	3 cut(s)	79, 155, 572
Bme18I	GGWCC	1 cut(s)	381
BmeT110I	CYCGRG	1 cut(s)	285
BmgT120I	GGNCC	1 cut(s)	381
BmiI	GGNNCC	4 cut(s)	6, 269, 355, 403
BmrFI	CCNGG	3 cut(s)	79, 155, 572
BmrI	ACTGGG	1 cut(s)	593
BmuI	ACTGGG	1 cut(s)	593
BpiI	GAAGAC	2 cut(s)	250, 638
BpmI	CTGGAG	2 cut(s)	137, 177
BpuEI	CTTGAG	1 cut(s)	263
BpuMI	CCSGG	1 cut(s)	79
BsaJI	CCNNGG	2 cut(s)	546, 619
BsaWI	WCCGGW	1 cut(s)	117
Bsc4I	CCNNNNNNNGG	2 cut(s)	117, 605
Bse118I	RCCGGY	1 cut(s)	117
Bse1I	ACTGG	3 cut(s)	412, 421, 599
BseBI	CCWGG	2 cut(s)	155, 572
BseDI	CCNNGG	2 cut(s)	546, 619
BseGI	GGATG	1 cut(s)	61
BseLI	CCNNNNNNNGG	2 cut(s)	117, 605
BseNI	ACTGG	3 cut(s)	412, 421, 599
BseRI	GAGGAG	3 cut(s)	475, 573, 576
BseXI	GCAGC	1 cut(s)	86
BshTI	ACCGGT	1 cut(s)	117
BsiHKCI	CYCGRG	1 cut(s)	285
BsiSI	CCGG	2 cut(s)	78, 118
BslI	CCNNNNNNNGG	2 cut(s)	117, 605
BsoBI	CYCGRG	1 cut(s)	285
Bsp19I	CCATGG	1 cut(s)	546
BspLI	GGNNCC	4 cut(s)	6, 269, 355, 403
BspPI	GGATC	5 cut(s)	340, 348, 361, 436, 558
BsrFI	RCCGGY	1 cut(s)	117
BsrI	ACTGG	3 cut(s)	412, 421, 599
BssAI	RCCGGY	1 cut(s)	117
BssECI	CCNNGG	2 cut(s)	546, 619
BssT1I	CCWWGG	2 cut(s)	546, 619
Bst2UI	CCWGG	2 cut(s)	155, 572
Bst4CI	ACNGT	1 cut(s)	231
Bst6I	CTCTTC	1 cut(s)	591
BstDEI	CTNAG	1 cut(s)	143
BstDSI	CCRYGG	1 cut(s)	546
BstEII	GGTNACC	1 cut(s)	623
BstF5I	GGATG	1 cut(s)	61
BstHHI	GCGC	1 cut(s)	656
BstMWI	GCNNNNNNNGC	1 cut(s)	103
BstNI	CCWGG	2 cut(s)	155, 572
BstPI	GGTNACC	1 cut(s)	623
BstSCI	CCNGG	3 cut(s)	77, 153, 570
BstV1I	GCAGC	1 cut(s)	86
BstV2I	GAAGAC	2 cut(s)	250, 638
BstX2I	RGATCY	4 cut(s)	210, 332, 353, 428
BstYI	RGATCY	4 cut(s)	210, 332, 353, 428
BtgI	CCRYGG	1 cut(s)	546
BtsCI	GGATG	1 cut(s)	61
BtsIMutI	CAGTG	2 cut(s)	405, 606
CfoI	GCGC	1 cut(s)	656
Cfr10I	RCCGGY	1 cut(s)	117
Cfr13I	GGNCC	1 cut(s)	381
Csp6I	GTAC	3 cut(s)	184, 420, 510
CspAI	ACCGGT	1 cut(s)	117
CviAII	CATG	2 cut(s)	453, 547
CviJI	RGCY	5 cut(s)	31, 77, 160, 284, 462
CviKI_1	RGCY	5 cut(s)	31, 77, 160, 284, 462
CviQI	GTAC	3 cut(s)	184, 420, 510
DdeI	CTNAG	1 cut(s)	143
DrdI	GACNNNNNNGTC	1 cut(s)	254
DseDI	GACNNNNNNGTC	1 cut(s)	254
Eam1104I	CTCTTC	1 cut(s)	591
EarI	CTCTTC	1 cut(s)	591
Eco130I	CCWWGG	2 cut(s)	546, 619
Eco47I	GGWCC	1 cut(s)	381
Eco57I	CTGAAG	1 cut(s)	164
Eco88I	CYCGRG	1 cut(s)	285
Eco91I	GGTNACC	1 cut(s)	623
EcoO65I	GGTNACC	1 cut(s)	623
EcoRII	CCWGG	2 cut(s)	153, 570
EcoT14I	CCWWGG	2 cut(s)	546, 619
ErhI	CCWWGG	2 cut(s)	546, 619
FaeI	CATG	2 cut(s)	456, 550
FaiI	YATR	8 cut(s)	168, 234, 454, 465, 478, 548, 658, 660
FalI	AAGNNNNNCTT	2 cut(s)	242, 274
FatI	CATG	2 cut(s)	452, 546
FauNDI	CATATG	1 cut(s)	658
Fnu4HI	GCNGC	1 cut(s)	75
FokI	GGATG	1 cut(s)	68
Fsp4HI	GCNGC	1 cut(s)	75
FspBI	CTAG	2 cut(s)	360, 507
GlaI	GCGC	1 cut(s)	655
GluI	GCNGC	1 cut(s)	75
GsuI	CTGGAG	2 cut(s)	137, 177
HapII	CCGG	2 cut(s)	78, 118
HhaI	GCGC	1 cut(s)	656
Hin1II	CATG	2 cut(s)	456, 550
Hin6I	GCGC	1 cut(s)	654
HinP1I	GCGC	1 cut(s)	654
HincII	GTYRAC	1 cut(s)	472
HindII	GTYRAC	1 cut(s)	472
HinfI	GANTC	3 cut(s)	124, 147, 202
HpaII	CCGG	2 cut(s)	78, 118
HphI	GGTGA	3 cut(s)	480, 560, 620
Hpy166II	GTNNAC	2 cut(s)	123, 472
Hpy188I	TCNGA	2 cut(s)	315, 643
Hpy188III	TCNNGA	5 cut(s)	194, 206, 271, 287, 338
Hpy8I	GTNNAC	2 cut(s)	123, 472
HpyAV	CCTTC	4 cut(s)	53, 227, 502, 641
HpyCH4III	ACNGT	1 cut(s)	231
HpyCH4IV	ACGT	3 cut(s)	255, 318, 615
HpyCH4V	TGCA	3 cut(s)	19, 226, 604
HpyF10VI	GCNNNNNNNGC	1 cut(s)	103
HpyF3I	CTNAG	1 cut(s)	143
HpySE526I	ACGT	3 cut(s)	255, 318, 615
Hsp92II	CATG	2 cut(s)	456, 550
HspAI	GCGC	1 cut(s)	654
LmnI	GCTCC	2 cut(s)	28, 157
Lsp1109I	GCAGC	1 cut(s)	86
MaeI	CTAG	2 cut(s)	360, 507
MaeII	ACGT	3 cut(s)	255, 318, 615
MaeIII	GTNAC	2 cut(s)	623, 662
MboII	GAAGA	4 cut(s)	211, 250, 578, 643
MflI	RGATCY	4 cut(s)	210, 332, 353, 428
MluCI	AATT	3 cut(s)	309, 346, 442
MlyI	GAGTC	1 cut(s)	118
MroXI	GAANNNNTTC	2 cut(s)	257, 585
MseI	TTAA	1 cut(s)	308
MspI	CCGG	2 cut(s)	78, 118
MspR9I	CCNGG	3 cut(s)	79, 155, 572
MvaI	CCWGG	2 cut(s)	155, 572
MwoI	GCNNNNNNNGC	1 cut(s)	103
NciI	CCSGG	1 cut(s)	79
NcoI	CCATGG	1 cut(s)	546
NdeI	CATATG	1 cut(s)	658
NlaIII	CATG	2 cut(s)	456, 550
NlaIV	GGNNCC	4 cut(s)	6, 269, 355, 403
PaeR7I	CTCGAG	1 cut(s)	285
PdmI	GAANNNNTTC	2 cut(s)	257, 585
PfeI	GAWTC	2 cut(s)	147, 202
PfoI	TCCNGGA	1 cut(s)	153
PinAI	ACCGGT	1 cut(s)	117
PkrI	GCNGC	1 cut(s)	76
PleI	GAGTC	1 cut(s)	118
PpsI	GAGTC	1 cut(s)	118
Psp1406I	AACGTT	1 cut(s)	318
Psp6I	CCWGG	2 cut(s)	153, 570
PspEI	GGTNACC	1 cut(s)	623
PspGI	CCWGG	2 cut(s)	153, 570
PspN4I	GGNNCC	4 cut(s)	6, 269, 355, 403
PspPI	GGNCC	1 cut(s)	381
PsuI	RGATCY	4 cut(s)	210, 332, 353, 428
RsaI	GTAC	3 cut(s)	185, 421, 511
RsaNI	GTAC	3 cut(s)	184, 420, 510
SaqAI	TTAA	1 cut(s)	308
SatI	GCNGC	1 cut(s)	75
Sau96I	GGNCC	1 cut(s)	381
ScaI	AGTACT	1 cut(s)	511
SchI	GAGTC	1 cut(s)	118
ScrFI	CCNGG	3 cut(s)	79, 155, 572
Sfr274I	CTCGAG	1 cut(s)	285
SinI	GGWCC	1 cut(s)	381
SlaI	CTCGAG	1 cut(s)	285
SmlI	CTYRAG	2 cut(s)	278, 285
SmoI	CTYRAG	2 cut(s)	278, 285
SpeI	ACTAGT	2 cut(s)	359, 506
Sse9I	AATT	3 cut(s)	309, 346, 442
SspMI	CTAG	2 cut(s)	360, 507
StyD4I	CCNGG	3 cut(s)	77, 153, 570
StyI	CCWWGG	2 cut(s)	546, 619
TaaI	ACNGT	1 cut(s)	231
TaiI	ACGT	3 cut(s)	258, 321, 618
TaqI	TCGA	3 cut(s)	51, 243, 286
TasI	AATT	3 cut(s)	309, 346, 442
TatI	WGTACW	1 cut(s)	509
TfiI	GAWTC	2 cut(s)	147, 202
Tru1I	TTAA	1 cut(s)	308
Tru9I	TTAA	1 cut(s)	308
TscAI	CASTG	2 cut(s)	412, 606
TseI	GCWGC	1 cut(s)	74
TspDTI	ATGAA	3 cut(s)	72, 209, 660
TspRI	CASTG	2 cut(s)	412, 606
VpaK11BI	GGWCC	1 cut(s)	381
XapI	RAATTY	1 cut(s)	442
XhoI	CTCGAG	1 cut(s)	285
XmnI	GAANNNNTTC	2 cut(s)	257, 585
XspI	CTAG	2 cut(s)	360, 507
ZrmI	AGTACT	1 cut(s)	511

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.