RchiOBHm_Chr2g0139941

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001058
Physical Location & Seq
Forward (+)
57355850 .. 57357109
1260 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51042

Sequence Viewer

Length: 918 bp
ATGGATGGTCAAATCAAGATCCTTGGAGAACTTCTATTGTGCTCTCCCAAATGTTTAGCAAGGCTCACAGGAGATGGAGAAACTGTGTTTCATCTGTCAGTAAGATTCAATAGAAACGCTGTGTTTACCTCTTTGGTAAAGAATTATAACAATACCTATCTCCTTAACCAGGCTGACAAGCATGGTAACACAATCTTACATCTCGCTTTATCAGAGTACATCATCAGAAATACTGCGGTAGATGTCAATTTTAAGAACCAAAGAGGTCAAACAGCGTTGGACATCCTAAACCAGCGAAGAACATCGGATCTTAGTAACATGTTGAAGAGTCTCGGTGGCAGGACCAGTATTGAGCTGTTCCATTTAACCCTAATGGTTAATGAGATAGATTCTGAGACTACTGCAACAACATTAGAAAGTCCTAGAGCTGCACTTGAGCAAGACTTTGAAATGCTTTTTGAAGCTCCCAAGTCTCAAATCCAAAGCAGGTTCCGAAGCCCAAGAGGAAAAAATAAAGTGGGTAAAACTAGGCAATATGAGATCTATAGGGAGGCGTTGCAAAATACTAGGAACACTATTACAATAATTGCTGTTTTGATTGCCTCGGTTACTTTTACTGCTGGCATAAACCCTCCGGGTGGTGTCTACGAGCAAGAGGGATGGCTTAAAGGACAGTCAACAGTTGGCAGAACAACAGCTTTTAAGGTCTTTACAATAAGCAACACAGCAGCATTGTCCATATATATGAGCATTGTCATTGTGTTGGTGAGTATCATTCCCTTCCGGCGACAATCACTGATGAAACTACTTGTGGTTGCTCACAAAGTCTTGTGGGTGGCGGTGTCCCTCATGACTACAGCTTACATTGCAGCCTCATGGTTAATCATGCCACATGGACACGGTGAAGGAGAAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 Ank_4 Ank_5 PGG

Protein Analysis

305

Amino Acids

34.0

Weight (kDa)

9.51

Isoelectric Point (pI)

33.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 184 - 294 1.5e-27 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 147
Acc36I ACCTGC 1 cut(s) 477
AccI GTMKAC 1 cut(s) 645
AciI CCGC 2 cut(s) 236, 839
AclWI GGATC 2 cut(s) 13, 315
AfaI GTAC 1 cut(s) 218
AfiI CCNNNNNNNGG 2 cut(s) 169, 638
AflIII ACRYGT 1 cut(s) 318
AgsI TTSAA 4 cut(s) 109, 325, 449, 461
AjnI CCWGG 1 cut(s) 168
AluBI AGCT 5 cut(s) 355, 428, 464, 698, 860
AluI AGCT 5 cut(s) 355, 428, 464, 698, 860
Alw21I GWGCWC 1 cut(s) 44
Alw26I GTCTC 3 cut(s) 335, 389, 477
AlwI GGATC 2 cut(s) 13, 315
ApeKI GCWGC 3 cut(s) 428, 728, 869
AspS9I GGNCC 1 cut(s) 342
AsuC2I CCSGG 1 cut(s) 636
AsuHPI GGTGA 2 cut(s) 778, 914
AvaII GGWCC 1 cut(s) 342
Bbv12I GWGCWC 1 cut(s) 44
BbvI GCAGC 3 cut(s) 415, 740, 881
BccI CCATC 2 cut(s) 68, 654
BciT130I CCWGG 1 cut(s) 170
BcnI CCSGG 1 cut(s) 636
BcoDI GTCTC 3 cut(s) 335, 389, 477
BfaI CTAG 3 cut(s) 423, 528, 567
BfmI CTRYAG 2 cut(s) 544, 855
BfuAI ACCTGC 1 cut(s) 477
BglII AGATCT 1 cut(s) 540
BisI GCNGC 3 cut(s) 429, 729, 870
BlsI GCNGC 3 cut(s) 430, 730, 871
Bme1390I CCNGG 2 cut(s) 170, 636
Bme18I GGWCC 1 cut(s) 342
BmgT120I GGNCC 1 cut(s) 342
BmiI GGNNCC 1 cut(s) 491
BmrFI CCNGG 2 cut(s) 170, 636
BpuEI CTTGAG 1 cut(s) 455
BpuMI CCSGG 1 cut(s) 636
BsaJI CCNNGG 2 cut(s) 22, 603
BsaXI ACNNNNNCTCC 2 cut(s) 69, 99
Bsc4I CCNNNNNNNGG 2 cut(s) 169, 638
Bse1I ACTGG 1 cut(s) 345
Bse3DI GCAATG 1 cut(s) 864
BseBI CCWGG 1 cut(s) 170
BseDI CCNNGG 2 cut(s) 22, 603
BseGI GGATG 3 cut(s) 10, 282, 665
BseLI CCNNNNNNNGG 2 cut(s) 169, 638
BseMI GCAATG 1 cut(s) 864
BseMII CTCAG 1 cut(s) 384
BseNI ACTGG 1 cut(s) 345
BseXI GCAGC 3 cut(s) 415, 740, 881
BsgI GTGCAG 1 cut(s) 414
BsiHKAI GWGCWC 1 cut(s) 44
BsiSI CCGG 2 cut(s) 635, 784
BslFI GGGAC 1 cut(s) 829
BslI CCNNNNNNNGG 2 cut(s) 169, 638
BsmAI GTCTC 3 cut(s) 335, 389, 477
BsmFI GGGAC 1 cut(s) 829
Bsp1286I GDGCHC 1 cut(s) 44
Bsp143I GATC 3 cut(s) 18, 307, 540
BspACI CCGC 2 cut(s) 236, 839
BspCNI CTCAG 1 cut(s) 385
BspHI TCATGA 1 cut(s) 849
BspLI GGNNCC 1 cut(s) 491
BspMI ACCTGC 1 cut(s) 477
BspPI GGATC 2 cut(s) 13, 315
BsrDI GCAATG 1 cut(s) 864
BsrI ACTGG 1 cut(s) 345
BssECI CCNNGG 2 cut(s) 22, 603
BssMI GATC 3 cut(s) 18, 307, 540
BssT1I CCWWGG 1 cut(s) 22
Bst2UI CCWGG 1 cut(s) 170
Bst4CI ACNGT 4 cut(s) 85, 675, 682, 902
Bst6I CTCTTC 1 cut(s) 320
BstC8I GCNNGC 1 cut(s) 622
BstDEI CTNAG 2 cut(s) 311, 393
BstENI CCTNNNNNAGG 1 cut(s) 167
BstF5I GGATG 3 cut(s) 10, 282, 665
BstKTI GATC 3 cut(s) 21, 310, 543
BstMAI GTCTC 3 cut(s) 335, 389, 477
BstMBI GATC 3 cut(s) 18, 307, 540
BstMWI GCNNNNNNNGC 1 cut(s) 866
BstNI CCWGG 1 cut(s) 170
BstNSI RCATGY 1 cut(s) 322
BstSCI CCNGG 2 cut(s) 168, 634
BstSFI CTRYAG 2 cut(s) 544, 855
BstV1I GCAGC 3 cut(s) 415, 740, 881
BstX2I RGATCY 3 cut(s) 18, 307, 540
BstYI RGATCY 3 cut(s) 18, 307, 540
BtsCI GGATG 3 cut(s) 10, 282, 665
BtsIMutI CAGTG 1 cut(s) 794
BveI ACCTGC 1 cut(s) 477
Cac8I GCNNGC 1 cut(s) 622
CciI TCATGA 1 cut(s) 849
Cfr13I GGNCC 1 cut(s) 342
Csp6I GTAC 1 cut(s) 217
CviAII CATG 6 cut(s) 182, 319, 850, 876, 886, 893
CviQI GTAC 1 cut(s) 217
DdeI CTNAG 2 cut(s) 311, 393
DpnI GATC 3 cut(s) 20, 309, 542
DpnII GATC 3 cut(s) 18, 307, 540
Eam1104I CTCTTC 1 cut(s) 320
EarI CTCTTC 1 cut(s) 320
Eco130I CCWWGG 1 cut(s) 22
Eco47I GGWCC 1 cut(s) 342
EcoNI CCTNNNNNAGG 1 cut(s) 167
EcoRII CCWGG 1 cut(s) 168
EcoT14I CCWWGG 1 cut(s) 22
ErhI CCWWGG 1 cut(s) 22
FaeI CATG 6 cut(s) 185, 322, 853, 879, 889, 896
FaqI GGGAC 1 cut(s) 829
FatI CATG 6 cut(s) 181, 318, 849, 875, 885, 892
FblI GTMKAC 1 cut(s) 645
Fnu4HI GCNGC 3 cut(s) 429, 729, 870
FokI GGATG 3 cut(s) 17, 269, 672
Fsp4HI GCNGC 3 cut(s) 429, 729, 870
FspBI CTAG 3 cut(s) 423, 528, 567
GluI GCNGC 3 cut(s) 429, 729, 870
HapII CCGG 2 cut(s) 635, 784
Hin1II CATG 6 cut(s) 185, 322, 853, 879, 889, 896
HincII GTYRAC 1 cut(s) 678
HindII GTYRAC 1 cut(s) 678
HinfI GANTC 3 cut(s) 105, 328, 389
HpaII CCGG 2 cut(s) 635, 784
HphI GGTGA 2 cut(s) 778, 914
Hpy166II GTNNAC 3 cut(s) 126, 646, 678
Hpy188I TCNGA 5 cut(s) 214, 227, 307, 394, 494
Hpy188III TCNNGA 2 cut(s) 16, 850
Hpy8I GTNNAC 3 cut(s) 126, 646, 678
HpyAV CCTTC 2 cut(s) 790, 899
HpyCH4III ACNGT 4 cut(s) 85, 675, 682, 902
HpyCH4V TGCA 4 cut(s) 404, 431, 559, 869
HpyF10VI GCNNNNNNNGC 1 cut(s) 866
HpyF3I CTNAG 2 cut(s) 311, 393
Hsp92II CATG 6 cut(s) 185, 322, 853, 879, 889, 896
Kzo9I GATC 3 cut(s) 18, 307, 540
LmnI GCTCC 1 cut(s) 469
Lsp1109I GCAGC 3 cut(s) 415, 740, 881
MaeI CTAG 3 cut(s) 423, 528, 567
MaeIII GTNAC 3 cut(s) 185, 314, 607
MalI GATC 3 cut(s) 20, 309, 542
MboI GATC 3 cut(s) 18, 307, 540
MboII GAAGA 2 cut(s) 309, 337
MflI RGATCY 3 cut(s) 18, 307, 540
MhlI GDGCHC 1 cut(s) 44
MluCI AATT 4 cut(s) 142, 247, 585, 913
MlyI GAGTC 1 cut(s) 337
MmeI TCCRAC 1 cut(s) 258
MnlI CCTC 9 cut(s) 139, 257, 497, 544, 613, 642, 649, 857, 883
MseI TTAA 7 cut(s) 165, 252, 365, 378, 666, 702, 881
MslI CAYNNNNRTG 1 cut(s) 743
MspI CCGG 2 cut(s) 635, 784
MspR9I CCNGG 2 cut(s) 170, 636
MvaI CCWGG 1 cut(s) 170
MwoI GCNNNNNNNGC 1 cut(s) 866
NciI CCSGG 1 cut(s) 636
NdeII GATC 3 cut(s) 18, 307, 540
NlaIII CATG 6 cut(s) 185, 322, 853, 879, 889, 896
NlaIV GGNNCC 1 cut(s) 491
NspI RCATGY 1 cut(s) 322
PagI TCATGA 1 cut(s) 849
PciI ACATGT 1 cut(s) 318
PfeI GAWTC 2 cut(s) 105, 389
PkrI GCNGC 3 cut(s) 430, 730, 871
PleI GAGTC 1 cut(s) 336
PpsI GAGTC 1 cut(s) 336
PscI ACATGT 1 cut(s) 318
PsiI TTATAA 1 cut(s) 147
Psp6I CCWGG 1 cut(s) 168
PspGI CCWGG 1 cut(s) 168
PspN4I GGNNCC 1 cut(s) 491
PspPI GGNCC 1 cut(s) 342
PsuI RGATCY 3 cut(s) 18, 307, 540
RsaI GTAC 1 cut(s) 218
RsaNI GTAC 1 cut(s) 217
RseI CAYNNNNRTG 1 cut(s) 743
SaqAI TTAA 7 cut(s) 165, 252, 365, 378, 666, 702, 881
SatI GCNGC 3 cut(s) 429, 729, 870
Sau3AI GATC 3 cut(s) 18, 307, 540
Sau96I GGNCC 1 cut(s) 342
SchI GAGTC 1 cut(s) 337
ScrFI CCNGG 2 cut(s) 170, 636
SduI GDGCHC 1 cut(s) 44
SfcI CTRYAG 2 cut(s) 544, 855
SinI GGWCC 1 cut(s) 342
SmiMI CAYNNNNRTG 1 cut(s) 743
SmlI CTYRAG 1 cut(s) 434
SmoI CTYRAG 1 cut(s) 434
Sse9I AATT 4 cut(s) 142, 247, 585, 913
SsiI CCGC 2 cut(s) 236, 839
SspMI CTAG 3 cut(s) 423, 528, 567
StyD4I CCNGG 2 cut(s) 168, 634
StyI CCWWGG 1 cut(s) 22
TaaI ACNGT 4 cut(s) 85, 675, 682, 902
TasI AATT 4 cut(s) 142, 247, 585, 913
TatI WGTACW 1 cut(s) 216
TfiI GAWTC 2 cut(s) 105, 389
Tru1I TTAA 7 cut(s) 165, 252, 365, 378, 666, 702, 881
Tru9I TTAA 7 cut(s) 165, 252, 365, 378, 666, 702, 881
TscAI CASTG 1 cut(s) 801
TseI GCWGC 3 cut(s) 428, 728, 869
TspDTI ATGAA 2 cut(s) 80, 815
TspRI CASTG 1 cut(s) 801
VpaK11BI GGWCC 1 cut(s) 342
XagI CCTNNNNNAGG 1 cut(s) 167
XceI RCATGY 1 cut(s) 322
XmiI GTMKAC 1 cut(s) 645
XspI CTAG 3 cut(s) 423, 528, 567
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.