RchiOBHm_Chr2g0139971

ankyrin repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
57363671 .. 57365490
1820 bp
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UTR
Exon/CDS
Intron
PRQ51045

Sequence Viewer

Length: 228 bp
ATGAACAAAGGGTGCCCCAGGTTTGCTTGGAAGGTTGACAGCAATGGGTGTCTACCGCTGCATATAGCTTGCGAAAAAGGTCACTTAGAGATAGCAAGAACACTGTTGATGATTGATCCAGACCTTGCTCTTGAATTTGACCATTATCATTACACACCAGTACACTTGGCTGCAATGGTCAAATCAAAATCCTTGAGGAACTTCTTTTGTGCTCTCCCAAATGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

75

Amino Acids

8.51

Weight (kDa)

7.74

Isoelectric Point (pI)

49.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 12 - 62 6.3e-08 Ankyrin repeats (3 copies)
Ank_5 PF13857 13 - 57 4.7e-06 Ankyrin repeats (many copies)
Ank PF00023 15 - 41 5.1e-06 Ankyrin repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 12
AccI GTMKAC 1 cut(s) 52
AciI CCGC 1 cut(s) 56
AclWI GGATC 1 cut(s) 110
AcsI RAATTY 1 cut(s) 134
AfaI GTAC 1 cut(s) 162
AgsI TTSAA 1 cut(s) 134
AjnI CCWGG 1 cut(s) 17
AluBI AGCT 1 cut(s) 68
AluI AGCT 1 cut(s) 68
Alw21I GWGCWC 1 cut(s) 214
AlwI GGATC 1 cut(s) 110
ApeKI GCWGC 2 cut(s) 58, 170
ApoI RAATTY 1 cut(s) 134
BaeGI GKGCMC 1 cut(s) 17
BanI GGYRCC 1 cut(s) 12
Bbv12I GWGCWC 1 cut(s) 214
BbvI GCAGC 2 cut(s) 45, 157
BciT130I CCWGG 1 cut(s) 19
BisI GCNGC 2 cut(s) 59, 171
BlsI GCNGC 2 cut(s) 60, 172
Bme1390I CCNGG 1 cut(s) 19
BmiI GGNNCC 1 cut(s) 14
BmrFI CCNGG 1 cut(s) 19
BpuEI CTTGAG 1 cut(s) 214
BsaJI CCNNGG 1 cut(s) 17
Bse1I ACTGG 1 cut(s) 158
Bse3DI GCAATG 2 cut(s) 49, 180
BseBI CCWGG 1 cut(s) 19
BseDI CCNNGG 1 cut(s) 17
BseMI GCAATG 2 cut(s) 49, 180
BseNI ACTGG 1 cut(s) 158
BseSI GKGCMC 1 cut(s) 17
BseXI GCAGC 2 cut(s) 45, 157
BshNI GGYRCC 1 cut(s) 12
BsiHKAI GWGCWC 1 cut(s) 214
Bsp1286I GDGCHC 2 cut(s) 17, 214
Bsp143I GATC 1 cut(s) 115
BspACI CCGC 1 cut(s) 56
BspLI GGNNCC 1 cut(s) 14
BspPI GGATC 1 cut(s) 110
BspT107I GGYRCC 1 cut(s) 12
BsrDI GCAATG 2 cut(s) 49, 180
BsrI ACTGG 1 cut(s) 158
BssECI CCNNGG 1 cut(s) 17
BssMI GATC 1 cut(s) 115
Bst2UI CCWGG 1 cut(s) 19
Bst4CI ACNGT 1 cut(s) 105
BstC8I GCNNGC 1 cut(s) 70
BstDEI CTNAG 1 cut(s) 85
BstKTI GATC 1 cut(s) 118
BstMBI GATC 1 cut(s) 115
BstNI CCWGG 1 cut(s) 19
BstSCI CCNGG 1 cut(s) 17
BstSLI GKGCMC 1 cut(s) 17
BstV1I GCAGC 2 cut(s) 45, 157
BtsIMutI CAGTG 1 cut(s) 101
Cac8I GCNNGC 1 cut(s) 70
Csp6I GTAC 1 cut(s) 161
CviJI RGCY 2 cut(s) 68, 170
CviKI_1 RGCY 2 cut(s) 68, 170
CviQI GTAC 1 cut(s) 161
DdeI CTNAG 1 cut(s) 85
DpnI GATC 1 cut(s) 117
DpnII GATC 1 cut(s) 115
EcoRII CCWGG 1 cut(s) 17
FaiI YATR 2 cut(s) 63, 65
FblI GTMKAC 1 cut(s) 52
Fnu4HI GCNGC 2 cut(s) 59, 171
Fsp4HI GCNGC 2 cut(s) 59, 171
GluI GCNGC 2 cut(s) 59, 171
HincII GTYRAC 1 cut(s) 37
HindII GTYRAC 1 cut(s) 37
Hpy166II GTNNAC 3 cut(s) 37, 53, 163
Hpy188III TCNNGA 2 cut(s) 119, 131
Hpy8I GTNNAC 3 cut(s) 37, 53, 163
HpyAV CCTTC 1 cut(s) 25
HpyCH4III ACNGT 1 cut(s) 105
HpyCH4V TGCA 2 cut(s) 61, 173
HpyF3I CTNAG 1 cut(s) 85
Kzo9I GATC 1 cut(s) 115
LpnPI CCDG 4 cut(s) 4, 31, 132, 171
Lsp1109I GCAGC 2 cut(s) 45, 157
MaeIII GTNAC 1 cut(s) 80
MalI GATC 1 cut(s) 117
MboI GATC 1 cut(s) 115
MhlI GDGCHC 2 cut(s) 17, 214
MluCI AATT 1 cut(s) 134
MnlI CCTC 1 cut(s) 189
MspA1I CMGCKG 1 cut(s) 58
MspR9I CCNGG 1 cut(s) 19
MvaI CCWGG 1 cut(s) 19
NdeII GATC 1 cut(s) 115
NlaIV GGNNCC 1 cut(s) 14
NmuCI GTSAC 1 cut(s) 80
PkrI GCNGC 2 cut(s) 60, 172
Psp6I CCWGG 1 cut(s) 17
PspGI CCWGG 1 cut(s) 17
PspN4I GGNNCC 1 cut(s) 14
RsaI GTAC 1 cut(s) 162
RsaNI GTAC 1 cut(s) 161
SatI GCNGC 2 cut(s) 59, 171
Sau3AI GATC 1 cut(s) 115
ScrFI CCNGG 1 cut(s) 19
SduI GDGCHC 2 cut(s) 17, 214
SetI ASST 5 cut(s) 23, 36, 70, 82, 126
SmlI CTYRAG 1 cut(s) 193
SmoI CTYRAG 1 cut(s) 193
Sse9I AATT 1 cut(s) 134
SsiI CCGC 1 cut(s) 56
StyD4I CCNGG 1 cut(s) 17
TaaI ACNGT 1 cut(s) 105
TasI AATT 1 cut(s) 134
TatI WGTACW 1 cut(s) 160
TscAI CASTG 1 cut(s) 108
TseFI GTSAC 1 cut(s) 80
TseI GCWGC 2 cut(s) 58, 170
Tsp45I GTSAC 1 cut(s) 80
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 108
XapI RAATTY 1 cut(s) 134
XmiI GTMKAC 1 cut(s) 52
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.