Rh6BG495700

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0001058
Physical Location & Seq
Forward (+)
69682507 .. 69683082
576 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG495700.1

Sequence Viewer

Length: 576 bp
ATGGGGCGTATGGCTCGAAACAATCAACAAATGAAACACTTCGCTACAGTACAAGCAAAGATGAATCCCAGTCATGATGTTTTAATGAATTCTGACGTTCTTTTTAGAGGGACAGTGGATAAAACTAGGCAATATGAGATATATAGAGAGGCATTGCAAAATACTAGGAACACTATCACAATAGTTGCTGTTTTGACGGACTCAGTTACTTTTACTGCTGGCATAAACCCACCTGGTGGTGTCTACCAGGAGGGATGGCTTAAAGGACAGTCAATATACAGTTGGCAGAACAACAGCTTTAAGGTCTTCACAATAAGCAACACAGCGGCATTGTTCATATCTATGTGCTTTATCATTGTGTTGGTGAGCATCATTCCCTTCCGGCGAAAATCACTGAATGACACTACTTGTGGTTGCTCACAAAGTCTTGTTGGTGACATTGCAGCCTCATGGCTATTCATGCCACATGGACGTGGTGAAGGAGAAAATTGGACCCTTGAAGTTGTGATATCTGTGTGTGCAGGGACCATGGGATCGTTTTCTTATTTCTTGGGGTCACATGGACTAGACACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 Ank_4 Ank_5 PGG

Protein Analysis

191

Amino Acids

21.19

Weight (kDa)

8.39

Isoelectric Point (pI)

20.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 50 - 132 5.9e-22 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 236
AccI GTMKAC 1 cut(s) 243
AciI CCGC 1 cut(s) 326
AclWI GGATC 1 cut(s) 541
AcsI RAATTY 1 cut(s) 88
AdeI CACNNNGTG 1 cut(s) 236
AfaI GTAC 1 cut(s) 51
AfiI CCNNNNNNNGG 1 cut(s) 236
AgsI TTSAA 1 cut(s) 500
AjiI CACGTC 1 cut(s) 473
AjnI CCWGG 2 cut(s) 232, 246
AluBI AGCT 1 cut(s) 297
AluI AGCT 1 cut(s) 297
AlwI GGATC 1 cut(s) 541
ApeKI GCWGC 1 cut(s) 443
ApoI RAATTY 1 cut(s) 88
Asp700I GAANNNNTTC 1 cut(s) 38
AspS9I GGNCC 2 cut(s) 492, 525
AsuHPI GGTGA 3 cut(s) 376, 446, 488
AvaII GGWCC 2 cut(s) 492, 525
BbsI GAAGAC 1 cut(s) 298
BbvI GCAGC 1 cut(s) 455
BccI CCATC 1 cut(s) 249
BciT130I CCWGG 2 cut(s) 234, 248
BfaI CTAG 3 cut(s) 126, 165, 566
BfmI CTRYAG 1 cut(s) 45
BisI GCNGC 2 cut(s) 327, 444
BlsI GCNGC 2 cut(s) 328, 445
Bme1390I CCNGG 2 cut(s) 234, 248
Bme18I GGWCC 2 cut(s) 492, 525
BmgBI CACGTC 1 cut(s) 473
BmgT120I GGNCC 2 cut(s) 492, 525
BmiI GGNNCC 2 cut(s) 494, 526
BmrFI CCNGG 2 cut(s) 234, 248
BmrI ACTGGG 1 cut(s) 63
BmsI GCATC 1 cut(s) 378
BmuI ACTGGG 1 cut(s) 63
BpiI GAAGAC 1 cut(s) 298
BsaJI CCNNGG 1 cut(s) 528
Bsc4I CCNNNNNNNGG 1 cut(s) 236
Bse1I ACTGG 1 cut(s) 69
Bse3DI GCAATG 2 cut(s) 152, 438
BseBI CCWGG 2 cut(s) 234, 248
BseDI CCNNGG 1 cut(s) 528
BseGI GGATG 1 cut(s) 260
BseLI CCNNNNNNNGG 1 cut(s) 236
BseMI GCAATG 2 cut(s) 152, 438
BseMII CTCAG 1 cut(s) 216
BseNI ACTGG 1 cut(s) 69
BseXI GCAGC 1 cut(s) 455
BsgI GTGCAG 1 cut(s) 540
BsiSI CCGG 1 cut(s) 382
BslFI GGGAC 2 cut(s) 124, 538
BslI CCNNNNNNNGG 1 cut(s) 236
BsmFI GGGAC 2 cut(s) 124, 538
Bsp143I GATC 1 cut(s) 533
Bsp19I CCATGG 1 cut(s) 528
BspACI CCGC 1 cut(s) 326
BspCNI CTCAG 1 cut(s) 215
BspHI TCATGA 1 cut(s) 73
BspLI GGNNCC 2 cut(s) 494, 526
BspPI GGATC 1 cut(s) 541
BsrDI GCAATG 2 cut(s) 152, 438
BsrI ACTGG 1 cut(s) 69
BssECI CCNNGG 1 cut(s) 528
BssMI GATC 1 cut(s) 533
BssT1I CCWWGG 1 cut(s) 528
Bst2UI CCWGG 2 cut(s) 234, 248
Bst4CI ACNGT 4 cut(s) 49, 115, 270, 281
BstC8I GCNNGC 1 cut(s) 220
BstDEI CTNAG 1 cut(s) 202
BstDSI CCRYGG 1 cut(s) 528
BstF5I GGATG 1 cut(s) 260
BstKTI GATC 1 cut(s) 536
BstMBI GATC 1 cut(s) 533
BstMWI GCNNNNNNNGC 1 cut(s) 460
BstNI CCWGG 2 cut(s) 234, 248
BstSCI CCNGG 2 cut(s) 232, 246
BstSFI CTRYAG 1 cut(s) 45
BstV1I GCAGC 1 cut(s) 455
BstV2I GAAGAC 1 cut(s) 298
BtgI CCRYGG 1 cut(s) 528
BtrI CACGTC 1 cut(s) 473
BtsCI GGATG 1 cut(s) 260
BtsIMutI CAGTG 2 cut(s) 120, 392
Cac8I GCNNGC 1 cut(s) 220
CciI TCATGA 1 cut(s) 73
Cfr13I GGNCC 2 cut(s) 492, 525
CsiI ACCWGGT 1 cut(s) 232
Csp6I GTAC 1 cut(s) 50
CviAII CATG 6 cut(s) 74, 450, 460, 467, 529, 560
CviJI RGCY 5 cut(s) 14, 259, 297, 446, 454
CviKI_1 RGCY 5 cut(s) 14, 259, 297, 446, 454
CviQI GTAC 1 cut(s) 50
DdeI CTNAG 1 cut(s) 202
DpnI GATC 1 cut(s) 535
DpnII GATC 1 cut(s) 533
DraIII CACNNNGTG 1 cut(s) 236
Eco130I CCWWGG 1 cut(s) 528
Eco32I GATATC 1 cut(s) 510
Eco47I GGWCC 2 cut(s) 492, 525
EcoRI GAATTC 1 cut(s) 88
EcoRII CCWGG 2 cut(s) 232, 246
EcoRV GATATC 1 cut(s) 510
EcoT14I CCWWGG 1 cut(s) 528
ErhI CCWWGG 1 cut(s) 528
FaeI CATG 6 cut(s) 77, 453, 463, 470, 532, 563
FaqI GGGAC 2 cut(s) 124, 538
FatI CATG 6 cut(s) 73, 449, 459, 466, 528, 559
FblI GTMKAC 1 cut(s) 243
Fnu4HI GCNGC 2 cut(s) 327, 444
FokI GGATG 1 cut(s) 267
Fsp4HI GCNGC 2 cut(s) 327, 444
FspBI CTAG 3 cut(s) 126, 165, 566
GluI GCNGC 2 cut(s) 327, 444
HapII CCGG 1 cut(s) 382
Hin1II CATG 6 cut(s) 77, 453, 463, 470, 532, 563
HinfI GANTC 2 cut(s) 64, 200
HpaII CCGG 1 cut(s) 382
HphI GGTGA 3 cut(s) 376, 446, 488
Hpy166II GTNNAC 1 cut(s) 244
Hpy188I TCNGA 1 cut(s) 94
Hpy188III TCNNGA 1 cut(s) 74
Hpy8I GTNNAC 1 cut(s) 244
HpyAV CCTTC 2 cut(s) 388, 473
HpyCH4III ACNGT 4 cut(s) 49, 115, 270, 281
HpyCH4IV ACGT 2 cut(s) 96, 472
HpyCH4V TGCA 3 cut(s) 157, 443, 521
HpyF10VI GCNNNNNNNGC 1 cut(s) 460
HpyF3I CTNAG 1 cut(s) 202
HpySE526I ACGT 2 cut(s) 96, 472
Hsp92II CATG 6 cut(s) 77, 453, 463, 470, 532, 563
Kzo9I GATC 1 cut(s) 533
LpnPI CCDG 8 cut(s) 82, 204, 219, 233, 246, 260, 395, 507
Lsp1109I GCAGC 1 cut(s) 455
LweI GCATC 1 cut(s) 378
MabI ACCWGGT 1 cut(s) 232
MaeI CTAG 3 cut(s) 126, 165, 566
MaeII ACGT 2 cut(s) 96, 472
MaeIII GTNAC 3 cut(s) 205, 434, 555
MalI GATC 1 cut(s) 535
MboI GATC 1 cut(s) 533
MboII GAAGA 1 cut(s) 298
MluCI AATT 2 cut(s) 88, 487
MlyI GAGTC 1 cut(s) 194
MnlI CCTC 4 cut(s) 101, 142, 244, 457
MroXI GAANNNNTTC 1 cut(s) 38
MseI TTAA 3 cut(s) 83, 261, 300
MslI CAYNNNNRTG 2 cut(s) 341, 471
MspA1I CMGCKG 1 cut(s) 326
MspI CCGG 1 cut(s) 382
MspR9I CCNGG 2 cut(s) 234, 248
MvaI CCWGG 2 cut(s) 234, 248
MwoI GCNNNNNNNGC 1 cut(s) 460
NcoI CCATGG 1 cut(s) 528
NdeII GATC 1 cut(s) 533
NlaIII CATG 6 cut(s) 77, 453, 463, 470, 532, 563
NlaIV GGNNCC 2 cut(s) 494, 526
NmuCI GTSAC 2 cut(s) 434, 555
PagI TCATGA 1 cut(s) 73
PdmI GAANNNNTTC 1 cut(s) 38
PfeI GAWTC 1 cut(s) 64
PflMI CCANNNNNTGG 1 cut(s) 236
PkrI GCNGC 2 cut(s) 328, 445
PleI GAGTC 1 cut(s) 194
PpsI GAGTC 1 cut(s) 194
Psp6I CCWGG 2 cut(s) 232, 246
PspGI CCWGG 2 cut(s) 232, 246
PspN4I GGNNCC 2 cut(s) 494, 526
PspPI GGNCC 2 cut(s) 492, 525
RsaI GTAC 1 cut(s) 51
RsaNI GTAC 1 cut(s) 50
RseI CAYNNNNRTG 2 cut(s) 341, 471
SaqAI TTAA 3 cut(s) 83, 261, 300
SatI GCNGC 2 cut(s) 327, 444
Sau3AI GATC 1 cut(s) 533
Sau96I GGNCC 2 cut(s) 492, 525
SchI GAGTC 1 cut(s) 194
ScrFI CCNGG 2 cut(s) 234, 248
SetI ASST 5 cut(s) 99, 235, 299, 306, 475
SexAI ACCWGGT 1 cut(s) 232
SfaNI GCATC 1 cut(s) 378
SfcI CTRYAG 1 cut(s) 45
SinI GGWCC 2 cut(s) 492, 525
SmiMI CAYNNNNRTG 2 cut(s) 341, 471
Sse9I AATT 2 cut(s) 88, 487
SsiI CCGC 1 cut(s) 326
SspMI CTAG 3 cut(s) 126, 165, 566
StyD4I CCNGG 2 cut(s) 232, 246
StyI CCWWGG 1 cut(s) 528
TaaI ACNGT 4 cut(s) 49, 115, 270, 281
TaiI ACGT 2 cut(s) 99, 475
TaqI TCGA 1 cut(s) 16
TasI AATT 2 cut(s) 88, 487
TatI WGTACW 1 cut(s) 49
TauI GCSGC 1 cut(s) 329
TfiI GAWTC 1 cut(s) 64
Tru1I TTAA 3 cut(s) 83, 261, 300
Tru9I TTAA 3 cut(s) 83, 261, 300
TscAI CASTG 2 cut(s) 120, 399
TseFI GTSAC 2 cut(s) 434, 555
TseI GCWGC 1 cut(s) 443
Tsp45I GTSAC 2 cut(s) 434, 555
TspDTI ATGAA 5 cut(s) 47, 77, 101, 325, 448
TspGWI ACGGA 1 cut(s) 212
TspRI CASTG 2 cut(s) 120, 399
Van91I CCANNNNNTGG 1 cut(s) 236
VpaK11BI GGWCC 2 cut(s) 492, 525
XapI RAATTY 1 cut(s) 88
XmiI GTMKAC 1 cut(s) 243
XmnI GAANNNNTTC 1 cut(s) 38
XspI CTAG 3 cut(s) 126, 165, 566
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.