Rmu_sc0007283.1_g000013

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007283.1
OG0001058
Physical Location & Seq
Forward (+)
58749 .. 59372
624 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007283.1_g000013.1.cds

Sequence Viewer

Length: 624 bp
ctgttctctttaaccccaaaggttgatgagatagattctgggactacaacaacattagaaagtcctagagctgcacaggaggaagaatttgaaaggctttctgaaggtaacacgcatccaggaagtgatcgatctgattgtgaaattgacatggggcgtatggctcgaaacaatcaacaaatgaaacacttcgctacagtacaagcaaagatgaatcccggtcatgatgttttaatgaattctgacgttctttttagagggacaatggataaaactaggcaatatgagatatatagagaggcattgcaaaatactaggaacactatcacaatagttgctgttttgactgactcagttacttttactgctggcataaacccacctggtggtgtctaccaggagggatggtttaaaggacagtcaatatacagttggcagaacaacagctttaaggtcttcacaataagcaacacagcggcattgttcatatctatgtgcattgtcattgtgttggtgagcatcattcccttccggcgaaaatcactgatgacactatttgtggttgctcacaaagtcttgttggtggcagtgtcactcatgttgctcacaaagtcttgttggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 Ank_4 Ank_5 PGG

Protein Analysis

207

Amino Acids

23.26

Weight (kDa)

7.08

Isoelectric Point (pI)

30.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 386
AccI GTMKAC 1 cut(s) 393
AciI CCGC 1 cut(s) 476
AcsI RAATTY 2 cut(s) 86, 238
AcuI CTGAAG 1 cut(s) 123
AdeI CACNNNGTG 1 cut(s) 386
AfaI GTAC 1 cut(s) 201
AfiI CCNNNNNNNGG 1 cut(s) 386
AgsI TTSAA 1 cut(s) 92
AjnI CCWGG 3 cut(s) 118, 382, 396
AluBI AGCT 2 cut(s) 71, 447
AluI AGCT 2 cut(s) 71, 447
ApeKI GCWGC 1 cut(s) 71
ApoI RAATTY 2 cut(s) 86, 238
Asp700I GAANNNNTTC 1 cut(s) 188
AsuC2I CCSGG 1 cut(s) 219
AsuHPI GGTGA 1 cut(s) 526
BbsI GAAGAC 1 cut(s) 448
BbvI GCAGC 1 cut(s) 58
BccI CCATC 1 cut(s) 399
BciT130I CCWGG 3 cut(s) 120, 384, 398
BcnI CCSGG 1 cut(s) 219
BfaI CTAG 3 cut(s) 66, 276, 315
BfmI CTRYAG 1 cut(s) 195
BisI GCNGC 2 cut(s) 72, 477
BlsI GCNGC 2 cut(s) 73, 478
Bme1390I CCNGG 4 cut(s) 120, 219, 384, 398
BmrFI CCNGG 4 cut(s) 120, 219, 384, 398
BmsI GCATC 2 cut(s) 124, 528
BpiI GAAGAC 1 cut(s) 448
BpuMI CCSGG 1 cut(s) 219
Bsa29I ATCGAT 1 cut(s) 130
BsaXI ACNNNNNCTCC 2 cut(s) 392, 422
Bsc4I CCNNNNNNNGG 1 cut(s) 386
Bse3DI GCAATG 1 cut(s) 302
BseBI CCWGG 3 cut(s) 120, 384, 398
BseCI ATCGAT 1 cut(s) 130
BseGI GGATG 2 cut(s) 115, 410
BseLI CCNNNNNNNGG 1 cut(s) 386
BseMI GCAATG 1 cut(s) 302
BseMII CTCAG 1 cut(s) 366
BseXI GCAGC 1 cut(s) 58
BsgI GTGCAG 1 cut(s) 57
BshVI ATCGAT 1 cut(s) 130
BsiSI CCGG 2 cut(s) 219, 532
BslFI GGGAC 2 cut(s) 55, 274
BslI CCNNNNNNNGG 1 cut(s) 386
BsmFI GGGAC 2 cut(s) 55, 274
Bsp143I GATC 2 cut(s) 127, 131
BspACI CCGC 1 cut(s) 476
BspCNI CTCAG 1 cut(s) 365
BspDI ATCGAT 1 cut(s) 130
BspHI TCATGA 1 cut(s) 223
BsrDI GCAATG 1 cut(s) 302
BssMI GATC 2 cut(s) 127, 131
Bst2UI CCWGG 3 cut(s) 120, 384, 398
Bst4CI ACNGT 3 cut(s) 199, 420, 431
BstC8I GCNNGC 1 cut(s) 370
BstDEI CTNAG 1 cut(s) 352
BstF5I GGATG 2 cut(s) 115, 410
BstKTI GATC 2 cut(s) 130, 134
BstMBI GATC 2 cut(s) 127, 131
BstNI CCWGG 3 cut(s) 120, 384, 398
BstSCI CCNGG 4 cut(s) 118, 217, 382, 396
BstSFI CTRYAG 1 cut(s) 195
BstV1I GCAGC 1 cut(s) 58
BstV2I GAAGAC 1 cut(s) 448
Bsu15I ATCGAT 1 cut(s) 130
BsuTUI ATCGAT 1 cut(s) 130
BtsCI GGATG 2 cut(s) 115, 410
BtsI GCAGTG 1 cut(s) 594
BtsIMutI CAGTG 2 cut(s) 542, 594
Cac8I GCNNGC 1 cut(s) 370
CciI TCATGA 1 cut(s) 223
ClaI ATCGAT 1 cut(s) 130
CsiI ACCWGGT 1 cut(s) 382
Csp6I GTAC 1 cut(s) 200
CviAII CATG 3 cut(s) 151, 224, 598
CviJI RGCY 4 cut(s) 71, 97, 164, 447
CviKI_1 RGCY 4 cut(s) 71, 97, 164, 447
CviQI GTAC 1 cut(s) 200
DdeI CTNAG 1 cut(s) 352
DpnI GATC 2 cut(s) 129, 133
DpnII GATC 2 cut(s) 127, 131
DraI TTTAAA 1 cut(s) 412
DraIII CACNNNGTG 1 cut(s) 386
Eco57I CTGAAG 1 cut(s) 123
EcoRI GAATTC 1 cut(s) 238
EcoRII CCWGG 3 cut(s) 118, 382, 396
FaeI CATG 3 cut(s) 154, 227, 601
FaqI GGGAC 2 cut(s) 55, 274
FatI CATG 3 cut(s) 150, 223, 597
FblI GTMKAC 1 cut(s) 393
Fnu4HI GCNGC 2 cut(s) 72, 477
FokI GGATG 2 cut(s) 102, 417
Fsp4HI GCNGC 2 cut(s) 72, 477
FspBI CTAG 3 cut(s) 66, 276, 315
GluI GCNGC 2 cut(s) 72, 477
HapII CCGG 2 cut(s) 219, 532
Hin1II CATG 3 cut(s) 154, 227, 601
HinfI GANTC 3 cut(s) 35, 214, 350
HpaII CCGG 2 cut(s) 219, 532
HphI GGTGA 1 cut(s) 526
Hpy166II GTNNAC 1 cut(s) 394
Hpy188I TCNGA 3 cut(s) 103, 136, 244
Hpy188III TCNNGA 1 cut(s) 224
Hpy8I GTNNAC 1 cut(s) 394
HpyAV CCTTC 2 cut(s) 98, 538
HpyCH4III ACNGT 3 cut(s) 199, 420, 431
HpyCH4IV ACGT 1 cut(s) 246
HpyCH4V TGCA 3 cut(s) 74, 307, 498
HpyF3I CTNAG 1 cut(s) 352
HpySE526I ACGT 1 cut(s) 246
Hsp92II CATG 3 cut(s) 154, 227, 601
Kzo9I GATC 2 cut(s) 127, 131
Lsp1109I GCAGC 1 cut(s) 58
LweI GCATC 2 cut(s) 124, 528
MabI ACCWGGT 1 cut(s) 382
MaeI CTAG 3 cut(s) 66, 276, 315
MaeII ACGT 1 cut(s) 246
MaeIII GTNAC 3 cut(s) 107, 355, 591
MalI GATC 2 cut(s) 129, 133
MboI GATC 2 cut(s) 127, 131
MboII GAAGA 2 cut(s) 95, 448
MluCI AATT 3 cut(s) 86, 144, 238
MlyI GAGTC 1 cut(s) 344
MnlI CCTC 4 cut(s) 73, 251, 292, 394
MroXI GAANNNNTTC 1 cut(s) 188
MseI TTAA 4 cut(s) 11, 233, 411, 450
MslI CAYNNNNRTG 1 cut(s) 491
MspA1I CMGCKG 1 cut(s) 476
MspI CCGG 2 cut(s) 219, 532
MspR9I CCNGG 4 cut(s) 120, 219, 384, 398
MvaI CCWGG 3 cut(s) 120, 384, 398
NciI CCSGG 1 cut(s) 219
NdeII GATC 2 cut(s) 127, 131
NlaIII CATG 3 cut(s) 154, 227, 601
NmuCI GTSAC 1 cut(s) 591
PagI TCATGA 1 cut(s) 223
PdmI GAANNNNTTC 1 cut(s) 188
PfeI GAWTC 2 cut(s) 35, 214
PflMI CCANNNNNTGG 1 cut(s) 386
PfoI TCCNGGA 1 cut(s) 118
PkrI GCNGC 2 cut(s) 73, 478
PleI GAGTC 1 cut(s) 344
PpsI GAGTC 1 cut(s) 344
Psp6I CCWGG 3 cut(s) 118, 382, 396
PspGI CCWGG 3 cut(s) 118, 382, 396
RsaI GTAC 1 cut(s) 201
RsaNI GTAC 1 cut(s) 200
RseI CAYNNNNRTG 1 cut(s) 491
SaqAI TTAA 4 cut(s) 11, 233, 411, 450
SatI GCNGC 2 cut(s) 72, 477
Sau3AI GATC 2 cut(s) 127, 131
SchI GAGTC 1 cut(s) 344
ScrFI CCNGG 4 cut(s) 120, 219, 384, 398
SetI ASST 7 cut(s) 24, 73, 109, 249, 385, 449, 456
SexAI ACCWGGT 1 cut(s) 382
SfaNI GCATC 2 cut(s) 124, 528
SfcI CTRYAG 1 cut(s) 195
SmiMI CAYNNNNRTG 1 cut(s) 491
Sse9I AATT 3 cut(s) 86, 144, 238
SsiI CCGC 1 cut(s) 476
SspMI CTAG 3 cut(s) 66, 276, 315
StyD4I CCNGG 4 cut(s) 118, 217, 382, 396
TaaI ACNGT 3 cut(s) 199, 420, 431
TaiI ACGT 1 cut(s) 249
TaqI TCGA 2 cut(s) 130, 166
TasI AATT 3 cut(s) 86, 144, 238
TatI WGTACW 1 cut(s) 199
TauI GCSGC 1 cut(s) 479
TfiI GAWTC 2 cut(s) 35, 214
Tru1I TTAA 4 cut(s) 11, 233, 411, 450
Tru9I TTAA 4 cut(s) 11, 233, 411, 450
TscAI CASTG 2 cut(s) 549, 594
TseFI GTSAC 1 cut(s) 591
TseI GCWGC 1 cut(s) 71
Tsp45I GTSAC 1 cut(s) 591
TspDTI ATGAA 4 cut(s) 197, 227, 251, 475
TspRI CASTG 2 cut(s) 549, 594
Van91I CCANNNNNTGG 1 cut(s) 386
XapI RAATTY 2 cut(s) 86, 238
XmiI GTMKAC 1 cut(s) 393
XmnI GAANNNNTTC 1 cut(s) 188
XspI CTAG 3 cut(s) 66, 276, 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.