RchiOBHm_Chr2g0139981

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001058
Physical Location & Seq
Forward (+)
57365492 .. 57366131
640 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51046

Sequence Viewer

Length: 549 bp
ATGGACATCTTATGCCAGCAAAGAAGAGCGTCGGATGTCAGAAACATGTTGAAGAGTTTTGGTGGCAGGAAGAGCACTGAGCTGTTGTCTTTAACACCAAAGATTGATGAGATAGATTATGAGACTACAACAATGTCAGAACGTCCTAGAGTTGTACTTGAGCAAGAATTTGAAATGCTTTTTGAAGGCATCACACATCCGGGAAGTGATCAATATGATTGTGAAATTGGTATGGGGCGTATGGCTATAAATGATCAACCAATGGAAGATTTCACTGTCGTACAAGAAAAGATGAATCCATGTCATCAAGTTTTGATGAACTCTGACAATCTTTTTGGCCCCGATTGTTTTAAATCAAGAATGAGCAGCATCTTCCAAAGCCAAGAGGACAAAACAAAGTGGGAAAAACTAGGCAATATGAGATATATAGAGAGAGGCACTGCAAAATACCAGGGACATAATAACATTAGTTGCCGTTCTAATTGCCTCAGGTACTTTCACTACTGGTATAAATCCTCCTGGTGGTGTCTACCAGGAGGGCCAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 Ank_4 Ank_5 PGG

Protein Analysis

182

Amino Acids

21.27

Weight (kDa)

5.83

Isoelectric Point (pI)

54.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 529
AcsI RAATTY 1 cut(s) 167
AfaI GTAC 3 cut(s) 156, 282, 494
AfiI CCNNNNNNNGG 1 cut(s) 522
AflIII ACRYGT 1 cut(s) 45
AgsI TTSAA 3 cut(s) 52, 173, 185
AjnI CCWGG 3 cut(s) 450, 518, 532
AluBI AGCT 2 cut(s) 82, 545
AluI AGCT 2 cut(s) 82, 545
Alw21I GWGCWC 1 cut(s) 77
Alw26I GTCTC 1 cut(s) 116
AoxI GGCC 2 cut(s) 337, 539
ApeKI GCWGC 1 cut(s) 366
ApoI RAATTY 1 cut(s) 167
ArsI GACNNNNNNTTYG 2 cut(s) 317, 349
AspS9I GGNCC 2 cut(s) 338, 539
AsuC2I CCSGG 1 cut(s) 201
AxyI CCTNAGG 1 cut(s) 488
Bbv12I GWGCWC 1 cut(s) 77
BbvI GCAGC 1 cut(s) 378
BceAI ACGGC 1 cut(s) 459
BciT130I CCWGG 3 cut(s) 452, 520, 534
BclI TGATCA 2 cut(s) 208, 253
BcnI CCSGG 1 cut(s) 201
BcoDI GTCTC 1 cut(s) 116
BfaI CTAG 2 cut(s) 147, 410
BisI GCNGC 1 cut(s) 367
BlsI GCNGC 1 cut(s) 368
Bme1390I CCNGG 4 cut(s) 201, 452, 520, 534
BmgT120I GGNCC 2 cut(s) 338, 539
BmiI GGNNCC 1 cut(s) 340
BmrFI CCNGG 4 cut(s) 201, 452, 520, 534
BmsI GCATC 2 cut(s) 198, 378
BpuEI CTTGAG 1 cut(s) 179
BpuMI CCSGG 1 cut(s) 201
BsaJI CCNNGG 1 cut(s) 451
Bsc4I CCNNNNNNNGG 1 cut(s) 522
Bse1I ACTGG 1 cut(s) 509
Bse21I CCTNAGG 1 cut(s) 488
BseBI CCWGG 3 cut(s) 452, 520, 534
BseDI CCNNGG 1 cut(s) 451
BseGI GGATG 2 cut(s) 40, 196
BseLI CCNNNNNNNGG 1 cut(s) 522
BseMII CTCAG 2 cut(s) 69, 502
BseNI ACTGG 1 cut(s) 509
BseXI GCAGC 1 cut(s) 378
BshFI GGCC 2 cut(s) 339, 541
BsiHKAI GWGCWC 1 cut(s) 77
BsiSI CCGG 1 cut(s) 200
BslFI GGGAC 1 cut(s) 468
BslI CCNNNNNNNGG 1 cut(s) 522
BsmAI GTCTC 1 cut(s) 116
BsmFI GGGAC 1 cut(s) 468
BsnI GGCC 2 cut(s) 339, 541
Bsp1286I GDGCHC 1 cut(s) 77
Bsp143I GATC 2 cut(s) 208, 253
BspANI GGCC 2 cut(s) 339, 541
BspCNI CTCAG 2 cut(s) 70, 501
BspLI GGNNCC 1 cut(s) 340
BspQI GCTCTTC 2 cut(s) 19, 65
BsrI ACTGG 1 cut(s) 509
BssECI CCNNGG 1 cut(s) 451
BssMI GATC 2 cut(s) 208, 253
Bst2UI CCWGG 3 cut(s) 452, 520, 534
Bst4CI ACNGT 1 cut(s) 277
Bst6I CTCTTC 3 cut(s) 19, 47, 65
BstC8I GCNNGC 2 cut(s) 17, 543
BstDEI CTNAG 2 cut(s) 78, 488
BstF5I GGATG 2 cut(s) 40, 196
BstKTI GATC 2 cut(s) 211, 256
BstMAI GTCTC 1 cut(s) 116
BstMBI GATC 2 cut(s) 208, 253
BstMWI GCNNNNNNNGC 1 cut(s) 72
BstNI CCWGG 3 cut(s) 452, 520, 534
BstNSI RCATGY 1 cut(s) 49
BstSCI CCNGG 4 cut(s) 199, 450, 518, 532
BstV1I GCAGC 1 cut(s) 378
Bsu36I CCTNAGG 1 cut(s) 488
BsuRI GGCC 2 cut(s) 339, 541
BtsCI GGATG 2 cut(s) 40, 196
BtsI GCAGTG 1 cut(s) 438
BtsIMutI CAGTG 3 cut(s) 75, 273, 438
Cac8I GCNNGC 2 cut(s) 17, 543
Cfr13I GGNCC 2 cut(s) 338, 539
CseI GACGC 1 cut(s) 18
Csp6I GTAC 3 cut(s) 155, 281, 493
CviAII CATG 2 cut(s) 46, 300
CviJI RGCY 6 cut(s) 82, 245, 339, 381, 541, 545
CviKI_1 RGCY 6 cut(s) 82, 245, 339, 381, 541, 545
CviQI GTAC 3 cut(s) 155, 281, 493
DdeI CTNAG 2 cut(s) 78, 488
DpnI GATC 2 cut(s) 210, 255
DpnII GATC 2 cut(s) 208, 253
DraI TTTAAA 1 cut(s) 352
Eam1104I CTCTTC 3 cut(s) 19, 47, 65
EarI CTCTTC 3 cut(s) 19, 47, 65
Eco81I CCTNAGG 1 cut(s) 488
EcoRII CCWGG 3 cut(s) 450, 518, 532
FaeI CATG 2 cut(s) 49, 303
FaqI GGGAC 1 cut(s) 468
FatI CATG 2 cut(s) 45, 299
FbaI TGATCA 2 cut(s) 208, 253
FblI GTMKAC 1 cut(s) 529
Fnu4HI GCNGC 1 cut(s) 367
FokI GGATG 2 cut(s) 47, 183
Fsp4HI GCNGC 1 cut(s) 367
FspBI CTAG 2 cut(s) 147, 410
GluI GCNGC 1 cut(s) 367
HaeIII GGCC 2 cut(s) 339, 541
HapII CCGG 1 cut(s) 200
HgaI GACGC 1 cut(s) 18
Hin1II CATG 2 cut(s) 49, 303
HinfI GANTC 1 cut(s) 295
HpaII CCGG 1 cut(s) 200
Hpy166II GTNNAC 1 cut(s) 530
Hpy188I TCNGA 4 cut(s) 34, 41, 139, 325
Hpy188III TCNNGA 1 cut(s) 357
Hpy8I GTNNAC 1 cut(s) 530
Hpy99I CGWCG 1 cut(s) 34
HpyAV CCTTC 1 cut(s) 179
HpyCH4III ACNGT 1 cut(s) 277
HpyCH4IV ACGT 1 cut(s) 142
HpyCH4V TGCA 1 cut(s) 443
HpyF10VI GCNNNNNNNGC 1 cut(s) 72
HpyF3I CTNAG 2 cut(s) 78, 488
HpySE526I ACGT 1 cut(s) 142
Hsp92II CATG 2 cut(s) 49, 303
Ksp22I TGATCA 2 cut(s) 208, 253
Kzo9I GATC 2 cut(s) 208, 253
LguI GCTCTTC 2 cut(s) 19, 65
Lsp1109I GCAGC 1 cut(s) 378
LweI GCATC 2 cut(s) 198, 378
MaeI CTAG 2 cut(s) 147, 410
MaeII ACGT 1 cut(s) 142
MalI GATC 2 cut(s) 210, 255
MboI GATC 2 cut(s) 208, 253
MboII GAAGA 5 cut(s) 36, 64, 82, 278, 364
MhlI GDGCHC 1 cut(s) 77
MluCI AATT 3 cut(s) 167, 225, 481
MmeI TCCRAC 1 cut(s) 12
MnlI CCTC 5 cut(s) 379, 428, 497, 526, 530
MseI TTAA 3 cut(s) 92, 351, 547
MspI CCGG 1 cut(s) 200
MspR9I CCNGG 4 cut(s) 201, 452, 520, 534
MvaI CCWGG 3 cut(s) 452, 520, 534
MwoI GCNNNNNNNGC 1 cut(s) 72
NciI CCSGG 1 cut(s) 201
NdeII GATC 2 cut(s) 208, 253
NlaIII CATG 2 cut(s) 49, 303
NlaIV GGNNCC 1 cut(s) 340
NspI RCATGY 1 cut(s) 49
PciI ACATGT 1 cut(s) 45
PciSI GCTCTTC 2 cut(s) 19, 65
PfeI GAWTC 1 cut(s) 295
PfoI TCCNGGA 1 cut(s) 199
PkrI GCNGC 1 cut(s) 368
PscI ACATGT 1 cut(s) 45
Psp6I CCWGG 3 cut(s) 450, 518, 532
PspGI CCWGG 3 cut(s) 450, 518, 532
PspN4I GGNNCC 1 cut(s) 340
PspPI GGNCC 2 cut(s) 338, 539
RsaI GTAC 3 cut(s) 156, 282, 494
RsaNI GTAC 3 cut(s) 155, 281, 493
SapI GCTCTTC 2 cut(s) 19, 65
SaqAI TTAA 3 cut(s) 92, 351, 547
SatI GCNGC 1 cut(s) 367
Sau3AI GATC 2 cut(s) 208, 253
Sau96I GGNCC 2 cut(s) 338, 539
ScrFI CCNGG 4 cut(s) 201, 452, 520, 534
SduI GDGCHC 1 cut(s) 77
SetI ASST 4 cut(s) 84, 145, 494, 547
SfaNI GCATC 2 cut(s) 198, 378
SmlI CTYRAG 1 cut(s) 158
SmoI CTYRAG 1 cut(s) 158
Sse9I AATT 3 cut(s) 167, 225, 481
SspMI CTAG 2 cut(s) 147, 410
StyD4I CCNGG 4 cut(s) 199, 450, 518, 532
TaaI ACNGT 1 cut(s) 277
TaiI ACGT 1 cut(s) 145
TasI AATT 3 cut(s) 167, 225, 481
TatI WGTACW 1 cut(s) 154
TfiI GAWTC 1 cut(s) 295
Tru1I TTAA 3 cut(s) 92, 351, 547
Tru9I TTAA 3 cut(s) 92, 351, 547
TscAI CASTG 3 cut(s) 82, 280, 445
TseI GCWGC 1 cut(s) 366
TspDTI ATGAA 2 cut(s) 308, 332
TspRI CASTG 3 cut(s) 82, 280, 445
XapI RAATTY 1 cut(s) 167
XceI RCATGY 1 cut(s) 49
XmiI GTMKAC 1 cut(s) 529
XspI CTAG 2 cut(s) 147, 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.