RchiOBHm_Chr6g0309561

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0001058
Physical Location & Seq
Forward (+)
67213391 .. 67213986
596 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27837

Sequence Viewer

Length: 546 bp
ATGAATCCCGGTCATGATGTTTTAATGAATTCTGACGTTCTTTTTAGAGGGACAGTGGATAAAACTAGGCAATATGAGATATATAGAGAGGCATTGCAAAATACTAGGACCACTATCACAATAGTTGCTGTTTTGACTGACTCAGTTACTTATACTGCTGGCATAAACCCACCTTGTGGTGTCTACCAGGAGGGATGGCTTAAAGGACAGTCAATATACAGTTGGCAGAACAACAGCTTTAAGGTCTTCACAATAAGCAACACAGCGGCATTGTTCATATCTATGTGCATTGTCATTGTGTTGGTGAGCATCATTCCCTTCCGGCGAAAATCACTGATGATCGACACTACTTGTGGTTGCTCACAAAGTCTTGTTGCCTCATGGATATTCATGCCACATGGACGTGGTGAAGGAGAAAATTGGACCCTTGAAGTTGTGACATCTGTGTGTGCAGGGACCATGGGATCTGTTTTCTTATTTCTTGGGGTCACATGGACCAGACACTTGATGAAAATGAAATGGAGGAAACAAATACGTAAGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 Ank_4 Ank_5 PGG

Protein Analysis

181

Amino Acids

20.47

Weight (kDa)

9.22

Isoelectric Point (pI)

16.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 30 - 110 1.9e-20 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 176
AccI GTMKAC 1 cut(s) 183
AciI CCGC 1 cut(s) 266
AclWI GGATC 1 cut(s) 472
AcsI RAATTY 1 cut(s) 28
AdeI CACNNNGTG 1 cut(s) 176
AfiI CCNNNNNNNGG 1 cut(s) 176
AgsI TTSAA 1 cut(s) 431
AjiI CACGTC 1 cut(s) 404
AjnI CCWGG 1 cut(s) 186
AluBI AGCT 1 cut(s) 237
AluI AGCT 1 cut(s) 237
AlwI GGATC 1 cut(s) 472
ApoI RAATTY 1 cut(s) 28
AspS9I GGNCC 4 cut(s) 108, 423, 456, 495
AsuC2I CCSGG 1 cut(s) 9
AsuHPI GGTGA 2 cut(s) 316, 419
AvaII GGWCC 4 cut(s) 108, 423, 456, 495
BbsI GAAGAC 1 cut(s) 238
BccI CCATC 1 cut(s) 189
BciT130I CCWGG 1 cut(s) 188
BcnI CCSGG 1 cut(s) 9
BfaI CTAG 2 cut(s) 66, 105
BisI GCNGC 1 cut(s) 267
BlsI GCNGC 1 cut(s) 268
Bme1390I CCNGG 2 cut(s) 9, 188
Bme18I GGWCC 4 cut(s) 108, 423, 456, 495
BmgBI CACGTC 1 cut(s) 404
BmgT120I GGNCC 4 cut(s) 108, 423, 456, 495
BmiI GGNNCC 2 cut(s) 425, 457
BmrFI CCNGG 2 cut(s) 9, 188
BmsI GCATC 1 cut(s) 318
BpiI GAAGAC 1 cut(s) 238
BpuMI CCSGG 1 cut(s) 9
BsaAI YACGTR 1 cut(s) 536
BsaJI CCNNGG 1 cut(s) 459
Bsc4I CCNNNNNNNGG 1 cut(s) 176
Bse3DI GCAATG 1 cut(s) 92
BseBI CCWGG 1 cut(s) 188
BseDI CCNNGG 1 cut(s) 459
BseGI GGATG 1 cut(s) 200
BseLI CCNNNNNNNGG 1 cut(s) 176
BseMI GCAATG 1 cut(s) 92
BseMII CTCAG 1 cut(s) 156
BsgI GTGCAG 1 cut(s) 471
BsiSI CCGG 2 cut(s) 9, 322
BslFI GGGAC 2 cut(s) 64, 469
BslI CCNNNNNNNGG 1 cut(s) 176
BsmFI GGGAC 2 cut(s) 64, 469
Bsp143I GATC 2 cut(s) 339, 464
Bsp19I CCATGG 1 cut(s) 459
BspACI CCGC 1 cut(s) 266
BspCNI CTCAG 1 cut(s) 155
BspHI TCATGA 1 cut(s) 13
BspLI GGNNCC 2 cut(s) 425, 457
BspPI GGATC 1 cut(s) 472
BsrDI GCAATG 1 cut(s) 92
BssECI CCNNGG 1 cut(s) 459
BssMI GATC 2 cut(s) 339, 464
BssT1I CCWWGG 1 cut(s) 459
Bst2UI CCWGG 1 cut(s) 188
Bst4CI ACNGT 3 cut(s) 55, 210, 221
BstBAI YACGTR 1 cut(s) 536
BstC8I GCNNGC 1 cut(s) 160
BstDEI CTNAG 1 cut(s) 142
BstDSI CCRYGG 1 cut(s) 459
BstF5I GGATG 1 cut(s) 200
BstKTI GATC 2 cut(s) 342, 467
BstMBI GATC 2 cut(s) 339, 464
BstNI CCWGG 1 cut(s) 188
BstSCI CCNGG 2 cut(s) 7, 186
BstSNI TACGTA 1 cut(s) 536
BstV2I GAAGAC 1 cut(s) 238
BstX2I RGATCY 1 cut(s) 464
BstYI RGATCY 1 cut(s) 464
BtgI CCRYGG 1 cut(s) 459
BtrI CACGTC 1 cut(s) 404
BtsCI GGATG 1 cut(s) 200
BtsIMutI CAGTG 2 cut(s) 60, 332
Cac8I GCNNGC 1 cut(s) 160
CciI TCATGA 1 cut(s) 13
Cfr13I GGNCC 4 cut(s) 108, 423, 456, 495
CviAII CATG 6 cut(s) 14, 381, 391, 398, 460, 492
CviJI RGCY 2 cut(s) 199, 237
CviKI_1 RGCY 2 cut(s) 199, 237
DdeI CTNAG 1 cut(s) 142
DpnI GATC 2 cut(s) 341, 466
DpnII GATC 2 cut(s) 339, 464
DraIII CACNNNGTG 1 cut(s) 176
Eco105I TACGTA 1 cut(s) 536
Eco130I CCWWGG 1 cut(s) 459
Eco47I GGWCC 4 cut(s) 108, 423, 456, 495
EcoRI GAATTC 1 cut(s) 28
EcoRII CCWGG 1 cut(s) 186
EcoT14I CCWWGG 1 cut(s) 459
ErhI CCWWGG 1 cut(s) 459
FaeI CATG 6 cut(s) 17, 384, 394, 401, 463, 495
FaqI GGGAC 2 cut(s) 64, 469
FatI CATG 6 cut(s) 13, 380, 390, 397, 459, 491
FblI GTMKAC 1 cut(s) 183
Fnu4HI GCNGC 1 cut(s) 267
FokI GGATG 1 cut(s) 207
Fsp4HI GCNGC 1 cut(s) 267
FspBI CTAG 2 cut(s) 66, 105
GluI GCNGC 1 cut(s) 267
HapII CCGG 2 cut(s) 9, 322
Hin1II CATG 6 cut(s) 17, 384, 394, 401, 463, 495
HinfI GANTC 2 cut(s) 4, 140
HpaII CCGG 2 cut(s) 9, 322
HphI GGTGA 2 cut(s) 316, 419
Hpy166II GTNNAC 1 cut(s) 184
Hpy188I TCNGA 1 cut(s) 34
Hpy188III TCNNGA 1 cut(s) 14
Hpy8I GTNNAC 1 cut(s) 184
HpyAV CCTTC 2 cut(s) 328, 404
HpyCH4III ACNGT 3 cut(s) 55, 210, 221
HpyCH4IV ACGT 3 cut(s) 36, 403, 535
HpyCH4V TGCA 3 cut(s) 97, 288, 452
HpyF3I CTNAG 1 cut(s) 142
HpySE526I ACGT 3 cut(s) 36, 403, 535
Hsp92II CATG 6 cut(s) 17, 384, 394, 401, 463, 495
Kzo9I GATC 2 cut(s) 339, 464
LpnPI CCDG 7 cut(s) 22, 144, 173, 200, 335, 438, 511
LweI GCATC 1 cut(s) 318
MaeI CTAG 2 cut(s) 66, 105
MaeII ACGT 3 cut(s) 36, 403, 535
MaeIII GTNAC 3 cut(s) 145, 436, 487
MalI GATC 2 cut(s) 341, 466
MboI GATC 2 cut(s) 339, 464
MboII GAAGA 1 cut(s) 238
MflI RGATCY 1 cut(s) 464
MluCI AATT 2 cut(s) 28, 418
MlyI GAGTC 1 cut(s) 134
MnlI CCTC 5 cut(s) 41, 82, 184, 388, 516
MseI TTAA 3 cut(s) 23, 201, 240
MslI CAYNNNNRTG 3 cut(s) 281, 402, 445
MspA1I CMGCKG 1 cut(s) 266
MspI CCGG 2 cut(s) 9, 322
MspR9I CCNGG 2 cut(s) 9, 188
MvaI CCWGG 1 cut(s) 188
NciI CCSGG 1 cut(s) 9
NcoI CCATGG 1 cut(s) 459
NdeII GATC 2 cut(s) 339, 464
NlaIII CATG 6 cut(s) 17, 384, 394, 401, 463, 495
NlaIV GGNNCC 2 cut(s) 425, 457
NmuCI GTSAC 2 cut(s) 436, 487
PagI TCATGA 1 cut(s) 13
PfeI GAWTC 1 cut(s) 4
PflMI CCANNNNNTGG 1 cut(s) 176
PkrI GCNGC 1 cut(s) 268
PleI GAGTC 1 cut(s) 134
PpsI GAGTC 1 cut(s) 134
Ppu21I YACGTR 1 cut(s) 536
Psp6I CCWGG 1 cut(s) 186
PspGI CCWGG 1 cut(s) 186
PspN4I GGNNCC 2 cut(s) 425, 457
PspPI GGNCC 4 cut(s) 108, 423, 456, 495
PsuI RGATCY 1 cut(s) 464
RseI CAYNNNNRTG 3 cut(s) 281, 402, 445
SaqAI TTAA 3 cut(s) 23, 201, 240
SatI GCNGC 1 cut(s) 267
Sau3AI GATC 2 cut(s) 339, 464
Sau96I GGNCC 4 cut(s) 108, 423, 456, 495
SchI GAGTC 1 cut(s) 134
ScrFI CCNGG 2 cut(s) 9, 188
SetI ASST 6 cut(s) 39, 175, 239, 246, 406, 538
SfaNI GCATC 1 cut(s) 318
SinI GGWCC 4 cut(s) 108, 423, 456, 495
SmiMI CAYNNNNRTG 3 cut(s) 281, 402, 445
SnaBI TACGTA 1 cut(s) 536
Sse9I AATT 2 cut(s) 28, 418
SsiI CCGC 1 cut(s) 266
SspMI CTAG 2 cut(s) 66, 105
StyD4I CCNGG 2 cut(s) 7, 186
StyI CCWWGG 1 cut(s) 459
TaaI ACNGT 3 cut(s) 55, 210, 221
TaiI ACGT 3 cut(s) 39, 406, 538
TaqI TCGA 1 cut(s) 342
TasI AATT 2 cut(s) 28, 418
TauI GCSGC 1 cut(s) 269
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 3 cut(s) 23, 201, 240
Tru9I TTAA 3 cut(s) 23, 201, 240
TscAI CASTG 2 cut(s) 60, 339
TseFI GTSAC 2 cut(s) 436, 487
Tsp45I GTSAC 2 cut(s) 436, 487
TspDTI ATGAA 6 cut(s) 17, 41, 265, 379, 524, 530
TspRI CASTG 2 cut(s) 60, 339
Van91I CCANNNNNTGG 1 cut(s) 176
VpaK11BI GGWCC 4 cut(s) 108, 423, 456, 495
XapI RAATTY 1 cut(s) 28
XmiI GTMKAC 1 cut(s) 183
XspI CTAG 2 cut(s) 66, 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.