Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001058

Physical Location & Seq

Genomic Coordinates Forward (+)

57335412 .. 57336957

Gene Structure 1546 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019839

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGACTTACAGACTTTTCAAGGACCTGATTCAAAACAATGAAGAATTTCTTATGCAGAAAACTGGCGAAACAAAGAACTCTGTGTTGCACCTTGCTGCAAGGTTCGGTCACATTGAGCTACTTGCCTTTATCATTGAGCTACTTCCTGACTTGGTTTCTATTGGAAACGTCAAGGGTGAAACTCCGTTACACGAAACTTGTCGCCAAGGGAATACCAATGTTGTGAAGCTGCTGGTAGAGGCCAATCCATATGTGATTGGGGTGTTAGACTCTGAAGAACATGAAGTTTTGAGTCCTCTTCATGTGTCTATAGCAGAAGGCTACGTTGATATTGTTCAGACTATTTTGAAAGGGTGCCCCAGGTTTGCTTGGAAGACCTTGCTCTTGAATTTTGACCATTATCGTTACACACCAGTACACTTGGCTGCAATGGATGGTCAAATCAAAATCCTTGGGGAACTTCTATTGTGCTCTCCCAAATGTTTAGCAAGGCTCACAGGAGATGGAGAAACTGTGTTTCATATTTCATTATCAGAGTACATCATCAGAAATACTGCGGTAGATGTCAATTTGAAGAACCAAAGAGGTCAAACAGCGTTGGACATCCTAAACCAGCGAAGAACATCATCGGATCTTAGTAACATGTTGAAGAGTCTCGGTGGCAGGACCAGTATTGAGCTGTTCCATTTAACCCTAAAGGTTGATGAGATAGATTCTGAGACTACTGCAACAACATTAGAAAGTCCTAGAGCTGCACTTGAGCAAAAATTTGAAATGCTTTTTGAAGGTAATACGCATCCAGGAAGTGATCAATATGATTGTGAAATTGGTAGGGGGTGCATGGCTAGAAACTGTACGGGAGTTATTCCATTCATGATGGATTCAATCCTCAGAAACAATCAACCAATGGAAGGCTTCACTACAGCACAAGCGAAGATGAATCCATGTCATCAAGTTGTGAAGAACTCTGATAATGTTTTTGGCTCAAATTCTTCTAGAACAAGAATGAGCTCCCAAGTCTCGAATCCAAAGCAGCTTCCGAAGCCCAAGAGGAAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_4 Ank_5 PGG

Protein Analysis

354

Amino Acids

39.52

Weight (kDa)

6.6

Isoelectric Point (pI)

34.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	5 - 81	2.6e-09	Ankyrin repeats (3 copies)
Ank_2	PF12796	29 - 118	9.6e-12	Ankyrin repeats (3 copies)
Ank_4	PF13637	29 - 79	3.1e-06	Ankyrin repeats (many copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50140 AT5G54710 AT5G54710
fragaria_vesca	FvH4_6g32122 FvH4_6g32123
prunus_persica	Prupe.3G061800_v2.0.a1 Prupe.3G061800_v2.0.a1 Prupe.3G062200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0139931 RchiOBHm_Chr2g0139941 RchiOBHm_Chr2g0139951 RchiOBHm_Chr2g0139971 RchiOBHm_Chr2g0139981 RchiOBHm_Chr2g0139991 RchiOBHm_Chr2g0140001 RchiOBHm_Chr2g0140011 RchiOBHm_Chr2g0140021 RchiOBHm_Chr6g0309561
rosa_laevigata	RLG00000010553 RLG00000019839 RLG00000019840 RLG00000019841 RLG00000019842
rosa_multiflora	Rmu_co8276735.1_g000001 Rmu_co8522085.1_g000001 Rmu_sc0000545.1_g000024 Rmu_sc0000545.1_g000026 Rmu_sc0000545.1_g000027 Rmu_sc0003101.1_g000002 Rmu_sc0007283.1_g000013 Rmu_sc0030536.1_g000003
rosa_roxburghii	Rroxscaffold_2G00105140 Rroxscaffold_2G00105150
rosa_rugosa	Rorug02G0360300 Rorug02G0360400 Rorug02G0360500
rosa_samantha	Rh2AG410600 Rh2AG410900 Rh2AG411000 Rh2AG411100 Rh2BG420800 Rh2BG420900 Rh2BG421000 Rh2BG421100 Rh2BG421200 Rh2BG421300 Rh2CG396700 Rh2CG396900 Rh2CG397100 Rh2CG397200 Rh2DG430300 Rh2DG430500 Rh2DG430800 Rh6AG486300 Rh6BG495700
rosa_wichuraiana	Rw2G033340 Rw2G033550 Rw2G033650 Rw2G033660 Rw2G033670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	354
AciI	CCGC	1 cut(s)	557
AclWI	GGATC	1 cut(s)	639
AcsI	RAATTY	4 cut(s)	44, 388, 767, 988
AcuI	CTGAAG	1 cut(s)	294
AfaI	GTAC	3 cut(s)	417, 539, 856
AfiI	CCNNNNNNNGG	1 cut(s)	911
AflIII	ACRYGT	1 cut(s)	642
AgsI	TTSAA	9 cut(s)	19, 32, 349, 388, 574, 649, 773, 785, 885
AjnI	CCWGG	2 cut(s)	359, 799
AluBI	AGCT	7 cut(s)	118, 139, 229, 679, 752, 1011, 1036
AluI	AGCT	7 cut(s)	118, 139, 229, 679, 752, 1011, 1036
Alw21I	GWGCWC	2 cut(s)	473, 1013
Alw26I	GTCTC	3 cut(s)	659, 713, 1024
AlwI	GGATC	1 cut(s)	639
AoxI	GGCC	1 cut(s)	240
ApeKI	GCWGC	5 cut(s)	95, 229, 425, 752, 1033
ApoI	RAATTY	4 cut(s)	44, 388, 767, 988
Asp700I	GAANNNNTTC	1 cut(s)	45
AspS9I	GGNCC	2 cut(s)	22, 666
AsuHPI	GGTGA	1 cut(s)	188
AvaII	GGWCC	2 cut(s)	22, 666
BaeGI	GKGCMC	1 cut(s)	359
BanI	GGYRCC	1 cut(s)	354
BanII	GRGCYC	1 cut(s)	1013
BbsI	GAAGAC	1 cut(s)	380
Bbv12I	GWGCWC	2 cut(s)	473, 1013
BbvI	GCAGC	5 cut(s)	82, 216, 412, 739, 1045
BccI	CCATC	3 cut(s)	428, 497, 871
BciT130I	CCWGG	2 cut(s)	361, 801
BclI	TGATCA	1 cut(s)	808
BcoDI	GTCTC	3 cut(s)	659, 713, 1024
BfaI	CTAG	3 cut(s)	747, 846, 996
BfmI	CTRYAG	2 cut(s)	309, 921
BisI	GCNGC	5 cut(s)	96, 230, 426, 753, 1034
BlsI	GCNGC	5 cut(s)	97, 231, 427, 754, 1035
Bme1390I	CCNGG	2 cut(s)	361, 801
Bme18I	GGWCC	2 cut(s)	22, 666
BmgT120I	GGNCC	2 cut(s)	22, 666
BmiI	GGNNCC	1 cut(s)	356
BmrFI	CCNGG	2 cut(s)	361, 801
BmsI	GCATC	1 cut(s)	805
BpiI	GAAGAC	1 cut(s)	380
BpuEI	CTTGAG	1 cut(s)	779
BsaJI	CCNNGG	3 cut(s)	205, 359, 451
BsaXI	ACNNNNNCTCC	2 cut(s)	498, 528
Bsc4I	CCNNNNNNNGG	1 cut(s)	911
Bse1I	ACTGG	3 cut(s)	67, 413, 669
Bse3DI	GCAATG	1 cut(s)	435
BseBI	CCWGG	2 cut(s)	361, 801
BseDI	CCNNGG	3 cut(s)	205, 359, 451
BseGI	GGATG	3 cut(s)	439, 603, 796
BseLI	CCNNNNNNNGG	1 cut(s)	911
BseMI	GCAATG	1 cut(s)	435
BseMII	CTCAG	2 cut(s)	708, 904
BseNI	ACTGG	3 cut(s)	67, 413, 669
BseSI	GKGCMC	1 cut(s)	359
BseXI	GCAGC	5 cut(s)	82, 216, 412, 739, 1045
BsgI	GTGCAG	1 cut(s)	738
BshFI	GGCC	1 cut(s)	242
BshNI	GGYRCC	1 cut(s)	354
BsiHKAI	GWGCWC	2 cut(s)	473, 1013
BslI	CCNNNNNNNGG	1 cut(s)	911
BsmAI	GTCTC	3 cut(s)	659, 713, 1024
BsnI	GGCC	1 cut(s)	242
Bsp1286I	GDGCHC	3 cut(s)	359, 473, 1013
Bsp143I	GATC	2 cut(s)	631, 808
BspACI	CCGC	1 cut(s)	557
BspANI	GGCC	1 cut(s)	242
BspCNI	CTCAG	2 cut(s)	709, 903
BspHI	TCATGA	1 cut(s)	873
BspLI	GGNNCC	1 cut(s)	356
BspPI	GGATC	1 cut(s)	639
BspT107I	GGYRCC	1 cut(s)	354
BsrDI	GCAATG	1 cut(s)	435
BsrI	ACTGG	3 cut(s)	67, 413, 669
BssECI	CCNNGG	3 cut(s)	205, 359, 451
BssMI	GATC	2 cut(s)	631, 808
BssT1I	CCWWGG	2 cut(s)	205, 451
Bst2UI	CCWGG	2 cut(s)	361, 801
Bst4CI	ACNGT	2 cut(s)	514, 854
Bst6I	CTCTTC	2 cut(s)	303, 644
BstDEI	CTNAG	3 cut(s)	635, 717, 890
BstF5I	GGATG	3 cut(s)	439, 603, 796
BstKTI	GATC	2 cut(s)	634, 811
BstMAI	GTCTC	3 cut(s)	659, 713, 1024
BstMBI	GATC	2 cut(s)	631, 808
BstMWI	GCNNNNNNNGC	1 cut(s)	1042
BstNI	CCWGG	2 cut(s)	361, 801
BstNSI	RCATGY	1 cut(s)	646
BstSCI	CCNGG	2 cut(s)	359, 799
BstSFI	CTRYAG	2 cut(s)	309, 921
BstSLI	GKGCMC	1 cut(s)	359
BstV1I	GCAGC	5 cut(s)	82, 216, 412, 739, 1045
BstV2I	GAAGAC	1 cut(s)	380
BstX2I	RGATCY	1 cut(s)	631
BstYI	RGATCY	1 cut(s)	631
BsuRI	GGCC	1 cut(s)	242
BtsCI	GGATG	3 cut(s)	439, 603, 796
CciI	TCATGA	1 cut(s)	873
Cfr13I	GGNCC	2 cut(s)	22, 666
Csp6I	GTAC	3 cut(s)	416, 538, 855
CviAII	CATG	6 cut(s)	281, 302, 643, 841, 874, 945
CviQI	GTAC	3 cut(s)	416, 538, 855
DdeI	CTNAG	3 cut(s)	635, 717, 890
DpnI	GATC	2 cut(s)	633, 810
DpnII	GATC	2 cut(s)	631, 808
Eam1104I	CTCTTC	2 cut(s)	303, 644
EarI	CTCTTC	2 cut(s)	303, 644
Ecl136II	GAGCTC	1 cut(s)	1011
Eco130I	CCWWGG	2 cut(s)	205, 451
Eco24I	GRGCYC	1 cut(s)	1013
Eco47I	GGWCC	2 cut(s)	22, 666
Eco53kI	GAGCTC	1 cut(s)	1011
Eco57I	CTGAAG	1 cut(s)	294
EcoICRI	GAGCTC	1 cut(s)	1011
EcoO109I	RGGNCCY	1 cut(s)	22
EcoRII	CCWGG	2 cut(s)	359, 799
EcoT14I	CCWWGG	2 cut(s)	205, 451
EcoT38I	GRGCYC	1 cut(s)	1013
ErhI	CCWWGG	2 cut(s)	205, 451
FaeI	CATG	6 cut(s)	284, 305, 646, 844, 877, 948
FalI	AAGNNNNNCTT	2 cut(s)	33, 65
FatI	CATG	6 cut(s)	280, 301, 642, 840, 873, 944
FauNDI	CATATG	1 cut(s)	250
FbaI	TGATCA	1 cut(s)	808
Fnu4HI	GCNGC	5 cut(s)	96, 230, 426, 753, 1034
FokI	GGATG	3 cut(s)	446, 590, 783
FriOI	GRGCYC	1 cut(s)	1013
Fsp4HI	GCNGC	5 cut(s)	96, 230, 426, 753, 1034
FspBI	CTAG	3 cut(s)	747, 846, 996
GluI	GCNGC	5 cut(s)	96, 230, 426, 753, 1034
HaeIII	GGCC	1 cut(s)	242
Hin1II	CATG	6 cut(s)	284, 305, 646, 844, 877, 948
HinfI	GANTC	8 cut(s)	28, 269, 292, 652, 713, 881, 940, 1024
HphI	GGTGA	1 cut(s)	188
Hpy166II	GTNNAC	1 cut(s)	418
Hpy188I	TCNGA	9 cut(s)	274, 339, 535, 548, 631, 718, 893, 970, 1041
Hpy188III	TCNNGA	5 cut(s)	146, 385, 874, 996, 1021
Hpy8I	GTNNAC	1 cut(s)	418
HpyAV	CCTTC	3 cut(s)	311, 779, 905
HpyCH4III	ACNGT	2 cut(s)	514, 854
HpyCH4IV	ACGT	2 cut(s)	168, 324
HpyCH4V	TGCA	7 cut(s)	55, 88, 98, 428, 728, 755, 840
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1042
HpyF3I	CTNAG	3 cut(s)	635, 717, 890
HpySE526I	ACGT	2 cut(s)	168, 324
Hsp92II	CATG	6 cut(s)	284, 305, 646, 844, 877, 948
Ksp22I	TGATCA	1 cut(s)	808
Kzo9I	GATC	2 cut(s)	631, 808
LmnI	GCTCC	1 cut(s)	1016
Lsp1109I	GCAGC	5 cut(s)	82, 216, 412, 739, 1045
LweI	GCATC	1 cut(s)	805
MaeI	CTAG	3 cut(s)	747, 846, 996
MaeII	ACGT	2 cut(s)	168, 324
MaeIII	GTNAC	4 cut(s)	107, 186, 404, 638
MalI	GATC	2 cut(s)	633, 810
MboI	GATC	2 cut(s)	631, 808
MflI	RGATCY	1 cut(s)	631
MhlI	GDGCHC	3 cut(s)	359, 473, 1013
MluCI	AATT	6 cut(s)	44, 388, 568, 767, 825, 988
MlyI	GAGTC	3 cut(s)	263, 301, 661
MmeI	TCCRAC	1 cut(s)	579
MnlI	CCTC	5 cut(s)	232, 306, 578, 899, 1044
MroXI	GAANNNNTTC	1 cut(s)	45
MseI	TTAA	1 cut(s)	689
MspR9I	CCNGG	2 cut(s)	361, 801
MvaI	CCWGG	2 cut(s)	361, 801
MwoI	GCNNNNNNNGC	1 cut(s)	1042
NdeI	CATATG	1 cut(s)	250
NdeII	GATC	2 cut(s)	631, 808
NlaIII	CATG	6 cut(s)	284, 305, 646, 844, 877, 948
NlaIV	GGNNCC	1 cut(s)	356
NmuCI	GTSAC	1 cut(s)	107
NspI	RCATGY	1 cut(s)	646
PagI	TCATGA	1 cut(s)	873
PciI	ACATGT	1 cut(s)	642
PdmI	GAANNNNTTC	1 cut(s)	45
PfeI	GAWTC	5 cut(s)	28, 713, 881, 940, 1024
PfoI	TCCNGGA	1 cut(s)	799
PkrI	GCNGC	5 cut(s)	97, 231, 427, 754, 1035
PleI	GAGTC	3 cut(s)	263, 300, 660
PpsI	GAGTC	3 cut(s)	263, 300, 660
PpuMI	RGGWCCY	1 cut(s)	22
PscI	ACATGT	1 cut(s)	642
Psp124BI	GAGCTC	1 cut(s)	1013
Psp5II	RGGWCCY	1 cut(s)	22
Psp6I	CCWGG	2 cut(s)	359, 799
PspGI	CCWGG	2 cut(s)	359, 799
PspN4I	GGNNCC	1 cut(s)	356
PspPI	GGNCC	2 cut(s)	22, 666
PspPPI	RGGWCCY	1 cut(s)	22
PsuI	RGATCY	1 cut(s)	631
RsaI	GTAC	3 cut(s)	417, 539, 856
RsaNI	GTAC	3 cut(s)	416, 538, 855
SacI	GAGCTC	1 cut(s)	1013
SaqAI	TTAA	1 cut(s)	689
SatI	GCNGC	5 cut(s)	96, 230, 426, 753, 1034
Sau3AI	GATC	2 cut(s)	631, 808
Sau96I	GGNCC	2 cut(s)	22, 666
SchI	GAGTC	3 cut(s)	263, 301, 661
ScrFI	CCNGG	2 cut(s)	361, 801
SduI	GDGCHC	3 cut(s)	359, 473, 1013
SfaNI	GCATC	1 cut(s)	805
SfcI	CTRYAG	2 cut(s)	309, 921
SinI	GGWCC	2 cut(s)	22, 666
SmlI	CTYRAG	1 cut(s)	758
SmoI	CTYRAG	1 cut(s)	758
Sse9I	AATT	6 cut(s)	44, 388, 568, 767, 825, 988
SsiI	CCGC	1 cut(s)	557
SspMI	CTAG	3 cut(s)	747, 846, 996
SstI	GAGCTC	1 cut(s)	1013
StyD4I	CCNGG	2 cut(s)	359, 799
StyI	CCWWGG	2 cut(s)	205, 451
TaaI	ACNGT	2 cut(s)	514, 854
TaiI	ACGT	2 cut(s)	171, 327
TaqI	TCGA	1 cut(s)	1022
TaqII	GACCGA	1 cut(s)	95
TasI	AATT	6 cut(s)	44, 388, 568, 767, 825, 988
TatI	WGTACW	2 cut(s)	415, 537
TfiI	GAWTC	5 cut(s)	28, 713, 881, 940, 1024
Tru1I	TTAA	1 cut(s)	689
Tru9I	TTAA	1 cut(s)	689
TseFI	GTSAC	1 cut(s)	107
TseI	GCWGC	5 cut(s)	95, 229, 425, 752, 1033
Tsp45I	GTSAC	1 cut(s)	107
TspDTI	ATGAA	7 cut(s)	54, 290, 297, 509, 516, 862, 953
TspGWI	ACGGA	1 cut(s)	174
VpaK11BI	GGWCC	2 cut(s)	22, 666
XapI	RAATTY	4 cut(s)	44, 388, 767, 988
XbaI	TCTAGA	1 cut(s)	995
XceI	RCATGY	1 cut(s)	646
XmnI	GAANNNNTTC	1 cut(s)	45
XspI	CTAG	3 cut(s)	747, 846, 996

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.