Rh2CG397100

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0001058
Physical Location & Seq
Forward (+)
53975346 .. 53977282
1937 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG397100.1

Sequence Viewer

Length: 1758 bp
ATGATTCCAGGGCTATTTGAAGCAATTGCAAGAAATGACACGCGGACTTTCATCGACTTGGTTGAAAACAATGGAGGTTCTCTCATTCAGAAAACTGAGGAAACAAAAAACTCGGTGTTACACCTTGCTGCAAGGTTCGGGCACGTTGAGCTGGTTGCCTATATCACTAAGCGGCTTCCTGACTTGGTTTCCGTTGGAAACATTAAGGGAGAAACTCCATTACATGAAGCTTGTCGCCAAGGGAATACCAGTGTTGTAAAGCTGCTGTTAGAGGTCAATCCATATGTGGCTTGTAGTCTGAACCACGAAATGCAAACTGCTTTCTACATGGCTTGTAGTCATGGAAATGTTGATGTTGTGAAGCACGTGACAAACCAACCAGGGGTGTTAGACGCTGAAGAACATGAAGTTTGCAGCCCTCTACATCTAGCTATAGCAGAAGGCTTTATCGATATTGTTAAGAGTATTTTAGAAGCTTGCCCCAGGTTTGCTTGGAAGGTTGACAGCAAAGGACTTTTGCCGCTCCATTTGGCTTGCGAAACAGGTCACGTAGAGATAACAAGAACACTCTTGACGATTGATCCAAACCTTGCTCTTGAGTTTAACCCTTACGGTTACACACCACTACACTTGGCTGCGATGAATGGTCAAATCCAAATCCTTGAGGAACTTTTACTTTGCTCTCCCAAATCTTTAGAACTTCTCACACGAGACAGGGAAACTGTCTTTCATCTTTCAGTAAGATTCAACAGATACAGTATGTTTACCTCCTTGGCAAAGAATTATAATGACACCAACCTCCTCAACCAGGCTGACAAGCATGGTAACACAATCTTACATCTCACCGTCGCTGCAGGGAACACTAGATTATCGGAGGACATCATCAGAAATACTACGGTAGATGTCAATTTTAAGAACCAAAGAGGTGAAACAGCGTTGGACATCCTAAATCAGCGAAGAACATTTTCGGATCTTAGAAACATGTTGAAGAGTTTTGGTGGCAGGACAAGTACTGAGCTGTTCCCTTTAACCCCAAAGGTTGATGAGATAGATTCTGAGACTACAACATTAGAAAGTCCTAGAGCTGCACTTGAGCAAGAATTTGAAATGCTTTTTGAAGGTAATATGCATCCAGGAAGTGATCAATATGATTGTGAAATTGGCAGGGGGCGCATGGCTAGAAACTGTACTGGTGTTATCCCATTCATGATGGATTCAATCCTCAGAAACAATCAACCACTGGAAGAATTCACTACAGTACAAGCGAAGATGAATCCATGTCATCAAGTTGTGATGAACTCTGATAATGATTTAGGCTCAAATTCTTTTAGAACAAGAATGAGCTCCCAAGTCTCGAATCCAAAGCAGGTTCCGAAGACAAGAGGAAAAAATAAAGTGGGTAAAACTAGGCAATATGAGATCTATAGGGAGGCATTGCAAAATACTAGGAACACTATCACAATAGTTGCTGTTTTGATTGCCTCGGTTACTTTTACTGCTGGCGTAAACCCTCCTGGTAGTGTCTACCAGGATGGATGGCTTAAAGGACAGTCAACTGTTGGCAGAACAACAGCCTTTAAGGTCTTTACAATAAGCAACACAGCAGCATTGTTCATATCCATGTGCATTGTCATTGTGTTGGTGAGCATCATTCCCTTCCGGCGAAAATCACTGATGAAACTACTTGTGATTGCTCACAAAGTCTTGTGGGTGCCGGTTCCCTCATGGCTACAGCTTACATTGCAGCGTCATGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 Ank_4 Ank_5 PGG

Protein Analysis

585

Amino Acids

65.38

Weight (kDa)

7.28

Isoelectric Point (pI)

33.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 6 - 92 1.8e-10 Ankyrin repeats (3 copies)
Ank_4 PF13637 40 - 90 1.8e-08 Ankyrin repeats (many copies)
Ank PF00023 70 - 93 6.9e-06 Ankyrin repeat
Ank_2 PF12796 141 - 225 7.5e-15 Ankyrin repeats (3 copies)
PGG PF13962 477 - 573 3e-25 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 786
Acc36I ACCTGC 1 cut(s) 1357
AccB1I GGYRCC 1 cut(s) 1711
AccBSI CCGCTC 1 cut(s) 523
AccI GTMKAC 1 cut(s) 1524
AccII CGCG 1 cut(s) 43
AciI CCGC 3 cut(s) 43, 172, 521
AclWI GGATC 2 cut(s) 575, 978
AcsI RAATTY 3 cut(s) 1100, 1247, 1321
AcuI CTGAAG 1 cut(s) 417
AcvI CACGTG 1 cut(s) 367
AfaI GTAC 3 cut(s) 1012, 1189, 1260
AfiI CCNNNNNNNGG 2 cut(s) 382, 808
AflIII ACRYGT 1 cut(s) 981
AgsI TTSAA 7 cut(s) 20, 65, 748, 988, 1106, 1118, 1218
AjnI CCWGG 7 cut(s) 7, 379, 482, 807, 1132, 1513, 1527
AluBI AGCT 9 cut(s) 151, 230, 262, 431, 476, 1018, 1085, 1344, 1735
AluI AGCT 9 cut(s) 151, 230, 262, 431, 476, 1018, 1085, 1344, 1735
Alw21I GWGCWC 1 cut(s) 1346
Alw26I GTCTC 3 cut(s) 705, 1052, 1357
AlwI GGATC 2 cut(s) 575, 978
ApeKI GCWGC 8 cut(s) 128, 262, 414, 635, 851, 1085, 1604, 1744
ApoI RAATTY 3 cut(s) 1100, 1247, 1321
Asp700I GAANNNNTTC 1 cut(s) 964
AspLEI GCGC 1 cut(s) 1173
AsuHPI GGTGA 3 cut(s) 835, 938, 1654
BaeGI GKGCMC 1 cut(s) 144
BanI GGYRCC 1 cut(s) 1711
BanII GRGCYC 1 cut(s) 1346
BauI CACGAG 1 cut(s) 708
BbrPI CACGTG 1 cut(s) 367
BbsI GAAGAC 1 cut(s) 1382
Bbv12I GWGCWC 1 cut(s) 1346
BbvI GCAGC 7 cut(s) 115, 249, 426, 622, 838, 1072, 1616
BccI CCATC 3 cut(s) 1204, 1526, 1530
BciT130I CCWGG 7 cut(s) 9, 381, 484, 809, 1134, 1515, 1529
BclI TGATCA 1 cut(s) 1141
BcoDI GTCTC 3 cut(s) 705, 1052, 1357
BfaI CTAG 6 cut(s) 428, 864, 1080, 1179, 1407, 1446
BfmI CTRYAG 5 cut(s) 432, 852, 1254, 1423, 1730
BfuAI ACCTGC 1 cut(s) 1357
BglII AGATCT 1 cut(s) 1419
BmcAI AGTACT 1 cut(s) 1012
Bme1390I CCNGG 7 cut(s) 9, 381, 484, 809, 1134, 1515, 1529
BmiI GGNNCC 3 cut(s) 1371, 1713, 1719
BmrFI CCNGG 7 cut(s) 9, 381, 484, 809, 1134, 1515, 1529
BmsI GCATC 2 cut(s) 1138, 1656
BpiI GAAGAC 1 cut(s) 1382
BplI GAGNNNNNCTC 2 cut(s) 66, 98
BpuEI CTTGAG 3 cut(s) 617, 683, 1112
Bsa29I ATCGAT 1 cut(s) 450
BsaAI YACGTR 2 cut(s) 367, 550
BsaJI CCNNGG 6 cut(s) 8, 238, 380, 482, 771, 1482
Bsc4I CCNNNNNNNGG 2 cut(s) 382, 808
Bse118I RCCGGY 1 cut(s) 1714
Bse1I ACTGG 3 cut(s) 249, 1195, 1245
Bse3DI GCAATG 2 cut(s) 1433, 1739
BseBI CCWGG 7 cut(s) 9, 381, 484, 809, 1134, 1515, 1529
BseCI ATCGAT 1 cut(s) 450
BseDI CCNNGG 6 cut(s) 8, 238, 380, 482, 771, 1482
BseGI GGATG 4 cut(s) 942, 1129, 1537, 1541
BseLI CCNNNNNNNGG 2 cut(s) 382, 808
BseMI GCAATG 2 cut(s) 1433, 1739
BseMII CTCAG 4 cut(s) 87, 1005, 1047, 1237
BseNI ACTGG 3 cut(s) 249, 1195, 1245
BseRI GAGGAG 1 cut(s) 791
BseSI GKGCMC 1 cut(s) 144
BseXI GCAGC 7 cut(s) 115, 249, 426, 622, 838, 1072, 1616
BsgI GTGCAG 1 cut(s) 1071
Bsh1236I CGCG 1 cut(s) 43
BshNI GGYRCC 1 cut(s) 1711
BshVI ATCGAT 1 cut(s) 450
BsiHKAI GWGCWC 1 cut(s) 1346
BsiSI CCGG 2 cut(s) 1660, 1715
BslI CCNNNNNNNGG 2 cut(s) 382, 808
BsmAI GTCTC 3 cut(s) 705, 1052, 1357
Bsp1286I GDGCHC 2 cut(s) 144, 1346
Bsp143I GATC 4 cut(s) 580, 970, 1141, 1419
BspACI CCGC 3 cut(s) 43, 172, 521
BspCNI CTCAG 4 cut(s) 88, 1006, 1048, 1236
BspDI ATCGAT 1 cut(s) 450
BspFNI CGCG 1 cut(s) 43
BspHI TCATGA 1 cut(s) 1206
BspLI GGNNCC 3 cut(s) 1371, 1713, 1719
BspMAI CTGCAG 1 cut(s) 856
BspMI ACCTGC 1 cut(s) 1357
BspPI GGATC 2 cut(s) 575, 978
BspT107I GGYRCC 1 cut(s) 1711
BsrBI CCGCTC 1 cut(s) 523
BsrDI GCAATG 2 cut(s) 1433, 1739
BsrFI RCCGGY 1 cut(s) 1714
BsrI ACTGG 3 cut(s) 249, 1195, 1245
BssAI RCCGGY 1 cut(s) 1714
BssECI CCNNGG 6 cut(s) 8, 238, 380, 482, 771, 1482
BssMI GATC 4 cut(s) 580, 970, 1141, 1419
BssSI CACGAG 1 cut(s) 708
BssT1I CCWWGG 2 cut(s) 238, 771
Bst2BI CACGAG 1 cut(s) 708
Bst2UI CCWGG 7 cut(s) 9, 381, 484, 809, 1134, 1515, 1529
Bst4CI ACNGT 9 cut(s) 614, 724, 758, 847, 898, 1187, 1258, 1551, 1558
Bst6I CTCTTC 1 cut(s) 983
BstBAI YACGTR 2 cut(s) 367, 550
BstC8I GCNNGC 3 cut(s) 478, 535, 1501
BstDEI CTNAG 6 cut(s) 96, 168, 974, 1014, 1056, 1223
BstENI CCTNNNNNAGG 1 cut(s) 806
BstF5I GGATG 4 cut(s) 942, 1129, 1537, 1541
BstFNI CGCG 1 cut(s) 43
BstHHI GCGC 1 cut(s) 1173
BstKTI GATC 4 cut(s) 583, 973, 1144, 1422
BstMAI GTCTC 3 cut(s) 705, 1052, 1357
BstMBI GATC 4 cut(s) 580, 970, 1141, 1419
BstMWI GCNNNNNNNGC 3 cut(s) 148, 1170, 1741
BstNI CCWGG 7 cut(s) 9, 381, 484, 809, 1134, 1515, 1529
BstNSI RCATGY 1 cut(s) 985
BstSCI CCNGG 7 cut(s) 7, 379, 482, 807, 1132, 1513, 1527
BstSFI CTRYAG 5 cut(s) 432, 852, 1254, 1423, 1730
BstSLI GKGCMC 1 cut(s) 144
BstUI CGCG 1 cut(s) 43
BstV1I GCAGC 7 cut(s) 115, 249, 426, 622, 838, 1072, 1616
BstV2I GAAGAC 1 cut(s) 1382
BstX2I RGATCY 2 cut(s) 970, 1419
BstYI RGATCY 2 cut(s) 970, 1419
Bsu15I ATCGAT 1 cut(s) 450
BsuTUI ATCGAT 1 cut(s) 450
BtgZI GCGATG 1 cut(s) 653
BtsCI GGATG 4 cut(s) 942, 1129, 1537, 1541
BtsIMutI CAGTG 3 cut(s) 256, 1238, 1670
BveI ACCTGC 1 cut(s) 1357
Cac8I GCNNGC 3 cut(s) 478, 535, 1501
CciI TCATGA 1 cut(s) 1206
CfoI GCGC 1 cut(s) 1173
Cfr10I RCCGGY 1 cut(s) 1714
ClaI ATCGAT 1 cut(s) 450
CseI GACGC 2 cut(s) 401, 1736
Csp6I GTAC 3 cut(s) 1011, 1188, 1259
CspCI CAANNNNNGTGG 2 cut(s) 612, 647
CviQI GTAC 3 cut(s) 1011, 1188, 1259
DdeI CTNAG 6 cut(s) 96, 168, 974, 1014, 1056, 1223
DpnI GATC 4 cut(s) 582, 972, 1143, 1421
DpnII GATC 4 cut(s) 580, 970, 1141, 1419
Eam1104I CTCTTC 1 cut(s) 983
EarI CTCTTC 1 cut(s) 983
Ecl136II GAGCTC 1 cut(s) 1344
Eco130I CCWWGG 2 cut(s) 238, 771
Eco24I GRGCYC 1 cut(s) 1346
Eco53kI GAGCTC 1 cut(s) 1344
Eco57I CTGAAG 1 cut(s) 417
Eco72I CACGTG 1 cut(s) 367
EcoICRI GAGCTC 1 cut(s) 1344
EcoNI CCTNNNNNAGG 1 cut(s) 806
EcoRI GAATTC 1 cut(s) 1247
EcoRII CCWGG 7 cut(s) 7, 379, 482, 807, 1132, 1513, 1527
EcoT14I CCWWGG 2 cut(s) 238, 771
EcoT22I ATGCAT 1 cut(s) 1131
EcoT38I GRGCYC 1 cut(s) 1346
ErhI CCWWGG 2 cut(s) 238, 771
FauNDI CATATG 1 cut(s) 283
FbaI TGATCA 1 cut(s) 1141
FblI GTMKAC 1 cut(s) 1524
FokI GGATG 4 cut(s) 929, 1116, 1544, 1548
FriOI GRGCYC 1 cut(s) 1346
FspBI CTAG 6 cut(s) 428, 864, 1080, 1179, 1407, 1446
GlaI GCGC 1 cut(s) 1172
HapII CCGG 2 cut(s) 1660, 1715
HgaI GACGC 2 cut(s) 401, 1736
HhaI GCGC 1 cut(s) 1173
Hin6I GCGC 1 cut(s) 1171
HinP1I GCGC 1 cut(s) 1171
HincII GTYRAC 2 cut(s) 502, 1554
HindII GTYRAC 2 cut(s) 502, 1554
HindIII AAGCTT 2 cut(s) 228, 474
HinfI GANTC 6 cut(s) 4, 744, 1052, 1214, 1273, 1357
HpaII CCGG 2 cut(s) 1660, 1715
HphI GGTGA 3 cut(s) 835, 938, 1654
Hpy166II GTNNAC 5 cut(s) 502, 765, 1507, 1525, 1554
Hpy188I TCNGA 9 cut(s) 90, 300, 874, 887, 970, 1057, 1226, 1303, 1374
Hpy188III TCNNGA 5 cut(s) 179, 571, 596, 1207, 1354
Hpy8I GTNNAC 5 cut(s) 502, 765, 1507, 1525, 1554
Hpy99I CGWCG 1 cut(s) 851
HpyAV CCTTC 4 cut(s) 434, 490, 1112, 1666
HpyCH4III ACNGT 9 cut(s) 614, 724, 758, 847, 898, 1187, 1258, 1551, 1558
HpyCH4IV ACGT 3 cut(s) 144, 366, 549
HpyF10VI GCNNNNNNNGC 3 cut(s) 148, 1170, 1741
HpyF3I CTNAG 6 cut(s) 96, 168, 974, 1014, 1056, 1223
HpySE526I ACGT 3 cut(s) 144, 366, 549
HspAI GCGC 1 cut(s) 1171
Ksp22I TGATCA 1 cut(s) 1141
Kzo9I GATC 4 cut(s) 580, 970, 1141, 1419
LmnI GCTCC 2 cut(s) 528, 1349
Lsp1109I GCAGC 7 cut(s) 115, 249, 426, 622, 838, 1072, 1616
LweI GCATC 2 cut(s) 1138, 1656
MaeI CTAG 6 cut(s) 428, 864, 1080, 1179, 1407, 1446
MaeII ACGT 3 cut(s) 144, 366, 549
MaeIII GTNAC 6 cut(s) 117, 367, 545, 614, 824, 1486
MalI GATC 4 cut(s) 582, 972, 1143, 1421
MbiI CCGCTC 1 cut(s) 523
MboI GATC 4 cut(s) 580, 970, 1141, 1419
MboII GAAGA 6 cut(s) 410, 969, 1000, 1256, 1279, 1387
MfeI CAATTG 1 cut(s) 24
MflI RGATCY 2 cut(s) 970, 1419
MhlI GDGCHC 2 cut(s) 144, 1346
MluCI AATT 7 cut(s) 24, 781, 907, 1100, 1158, 1247, 1321
MmeI TCCRAC 2 cut(s) 175, 918
Mph1103I ATGCAT 1 cut(s) 1131
MroXI GAANNNNTTC 1 cut(s) 964
MseI TTAA 7 cut(s) 204, 459, 603, 912, 1028, 1542, 1578
MslI CAYNNNNRTG 2 cut(s) 345, 1619
MspI CCGG 2 cut(s) 1660, 1715
MspR9I CCNGG 7 cut(s) 9, 381, 484, 809, 1134, 1515, 1529
MunI CAATTG 1 cut(s) 24
MvaI CCWGG 7 cut(s) 9, 381, 484, 809, 1134, 1515, 1529
MvnI CGCG 1 cut(s) 43
MwoI GCNNNNNNNGC 3 cut(s) 148, 1170, 1741
NdeI CATATG 1 cut(s) 283
NdeII GATC 4 cut(s) 580, 970, 1141, 1419
NlaIV GGNNCC 3 cut(s) 1371, 1713, 1719
NmuCI GTSAC 2 cut(s) 367, 545
NsiI ATGCAT 1 cut(s) 1131
NspI RCATGY 1 cut(s) 985
PagI TCATGA 1 cut(s) 1206
PciI ACATGT 1 cut(s) 981
PdmI GAANNNNTTC 1 cut(s) 964
PfeI GAWTC 6 cut(s) 4, 744, 1052, 1214, 1273, 1357
PfoI TCCNGGA 1 cut(s) 1132
PmaCI CACGTG 1 cut(s) 367
PmlI CACGTG 1 cut(s) 367
Ppu21I YACGTR 2 cut(s) 367, 550
PscI ACATGT 1 cut(s) 981
PsiI TTATAA 1 cut(s) 786
Psp124BI GAGCTC 1 cut(s) 1346
Psp6I CCWGG 7 cut(s) 7, 379, 482, 807, 1132, 1513, 1527
PspCI CACGTG 1 cut(s) 367
PspGI CCWGG 7 cut(s) 7, 379, 482, 807, 1132, 1513, 1527
PspN4I GGNNCC 3 cut(s) 1371, 1713, 1719
PstI CTGCAG 1 cut(s) 856
PsuI RGATCY 2 cut(s) 970, 1419
RsaI GTAC 3 cut(s) 1012, 1189, 1260
RsaNI GTAC 3 cut(s) 1011, 1188, 1259
RseI CAYNNNNRTG 2 cut(s) 345, 1619
SacI GAGCTC 1 cut(s) 1346
SaqAI TTAA 7 cut(s) 204, 459, 603, 912, 1028, 1542, 1578
Sau3AI GATC 4 cut(s) 580, 970, 1141, 1419
ScaI AGTACT 1 cut(s) 1012
ScrFI CCNGG 7 cut(s) 9, 381, 484, 809, 1134, 1515, 1529
SduI GDGCHC 2 cut(s) 144, 1346
SfaNI GCATC 2 cut(s) 1138, 1656
SfcI CTRYAG 5 cut(s) 432, 852, 1254, 1423, 1730
SmiMI CAYNNNNRTG 2 cut(s) 345, 1619
SmlI CTYRAG 3 cut(s) 596, 662, 1091
SmoI CTYRAG 3 cut(s) 596, 662, 1091
Sse9I AATT 7 cut(s) 24, 781, 907, 1100, 1158, 1247, 1321
SsiI CCGC 3 cut(s) 43, 172, 521
SspMI CTAG 6 cut(s) 428, 864, 1080, 1179, 1407, 1446
SstI GAGCTC 1 cut(s) 1346
StyD4I CCNGG 7 cut(s) 7, 379, 482, 807, 1132, 1513, 1527
StyI CCWWGG 2 cut(s) 238, 771
TaaI ACNGT 9 cut(s) 614, 724, 758, 847, 898, 1187, 1258, 1551, 1558
TaiI ACGT 3 cut(s) 147, 369, 552
TaqI TCGA 3 cut(s) 54, 450, 1355
TasI AATT 7 cut(s) 24, 781, 907, 1100, 1158, 1247, 1321
TatI WGTACW 3 cut(s) 1010, 1187, 1258
TauI GCSGC 2 cut(s) 175, 523
TfiI GAWTC 6 cut(s) 4, 744, 1052, 1214, 1273, 1357
Tru1I TTAA 7 cut(s) 204, 459, 603, 912, 1028, 1542, 1578
Tru9I TTAA 7 cut(s) 204, 459, 603, 912, 1028, 1542, 1578
TscAI CASTG 3 cut(s) 256, 1245, 1677
TseFI GTSAC 2 cut(s) 367, 545
TseI GCWGC 8 cut(s) 128, 262, 414, 635, 851, 1085, 1604, 1744
Tsp45I GTSAC 2 cut(s) 367, 545
TspGWI ACGGA 1 cut(s) 181
TspRI CASTG 3 cut(s) 256, 1245, 1677
XagI CCTNNNNNAGG 1 cut(s) 806
XapI RAATTY 3 cut(s) 1100, 1247, 1321
XceI RCATGY 1 cut(s) 985
XmiI GTMKAC 1 cut(s) 1524
XmnI GAANNNNTTC 1 cut(s) 964
XspI CTAG 6 cut(s) 428, 864, 1080, 1179, 1407, 1446
ZrmI AGTACT 1 cut(s) 1012
Zsp2I ATGCAT 1 cut(s) 1131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.