RLG00000019840

ankyrin repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
57338507 .. 57339066
560 bp
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UTR
Exon/CDS
Intron
RLM00000019840

Sequence Viewer

Length: 405 bp
ATGATTCCAGCAGGGCTATATGAAGCAATTGCAAGAAATGACAGTCAGACTTTCAAGGACATTGTTCAATACAATGGTGAATCTCTCTTGCAGAAAACTGGAGAAACAAGAGACTCAGTGTTACACCTTGCTGCCAGGAACGTTAAGGGAGAAACTCCGTTACACGAAGCTTGTCGCCAAGGGAATACCAATGTTGTGAAGCTGCTGGTAGAGGCCAATCCATATGTGGTTGGTACTCTTAACCATGAAATGCAAACTGCTTTTTACATAGCCTGCAGTTGTGGGAATGTTGATGTTGTCAAGTACATGGCAAACCGGATGTCAGACTTTGAACAACATGAAGCTTCCAGTCCTCTTCATCATTCTATAGCAGAAGGCTTTGATGTCGATATTGTCAAGTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

135

Amino Acids

14.83

Weight (kDa)

5.41

Isoelectric Point (pI)

32.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 9 - 109 8.2e-13 Ankyrin repeats (3 copies)
Ank PF00023 50 - 75 5.8e-07 Ankyrin repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 141
AfaI GTAC 2 cut(s) 235, 305
AgsI TTSAA 3 cut(s) 55, 68, 332
AjnI CCWGG 1 cut(s) 134
AluBI AGCT 3 cut(s) 170, 202, 344
AluI AGCT 3 cut(s) 170, 202, 344
Alw26I GTCTC 1 cut(s) 105
AoxI GGCC 1 cut(s) 213
ApeKI GCWGC 2 cut(s) 131, 202
ArsI GACNNNNNNTTYG 2 cut(s) 305, 337
AsuHPI GGTGA 1 cut(s) 89
BbvI GCAGC 2 cut(s) 118, 189
BciT130I CCWGG 1 cut(s) 136
BcoDI GTCTC 1 cut(s) 105
BfmI CTRYAG 2 cut(s) 274, 366
BisI GCNGC 2 cut(s) 132, 203
BlsI GCNGC 2 cut(s) 133, 204
Bme1390I CCNGG 1 cut(s) 136
BmrFI CCNGG 1 cut(s) 136
BpmI CTGGAG 1 cut(s) 120
BsaJI CCNNGG 1 cut(s) 178
BsaWI WCCGGW 1 cut(s) 315
Bse1I ACTGG 2 cut(s) 103, 348
BseBI CCWGG 1 cut(s) 136
BseDI CCNNGG 1 cut(s) 178
BseGI GGATG 1 cut(s) 324
BseMII CTCAG 1 cut(s) 129
BseNI ACTGG 2 cut(s) 103, 348
BseXI GCAGC 2 cut(s) 118, 189
BshFI GGCC 1 cut(s) 215
BsiSI CCGG 1 cut(s) 316
BsmAI GTCTC 1 cut(s) 105
BsnI GGCC 1 cut(s) 215
BspANI GGCC 1 cut(s) 215
BspCNI CTCAG 1 cut(s) 128
BspMAI CTGCAG 1 cut(s) 278
BsrI ACTGG 2 cut(s) 103, 348
BssECI CCNNGG 1 cut(s) 178
BssT1I CCWWGG 1 cut(s) 178
Bst2UI CCWGG 1 cut(s) 136
Bst4CI ACNGT 1 cut(s) 44
Bst6I CTCTTC 1 cut(s) 360
BstC8I GCNNGC 1 cut(s) 274
BstDEI CTNAG 1 cut(s) 115
BstF5I GGATG 1 cut(s) 324
BstMAI GTCTC 1 cut(s) 105
BstNI CCWGG 1 cut(s) 136
BstSCI CCNGG 1 cut(s) 134
BstSFI CTRYAG 2 cut(s) 274, 366
BstV1I GCAGC 2 cut(s) 118, 189
BsuRI GGCC 1 cut(s) 215
BtsCI GGATG 1 cut(s) 324
BtsIMutI CAGTG 1 cut(s) 123
Cac8I GCNNGC 1 cut(s) 274
Csp6I GTAC 2 cut(s) 234, 304
CviAII CATG 3 cut(s) 245, 307, 338
CviJI RGCY 7 cut(s) 16, 170, 202, 215, 272, 344, 378
CviKI_1 RGCY 7 cut(s) 16, 170, 202, 215, 272, 344, 378
CviQI GTAC 2 cut(s) 234, 304
DdeI CTNAG 1 cut(s) 115
Eam1104I CTCTTC 1 cut(s) 360
EarI CTCTTC 1 cut(s) 360
Eco130I CCWWGG 1 cut(s) 178
EcoRII CCWGG 1 cut(s) 134
EcoT14I CCWWGG 1 cut(s) 178
ErhI CCWWGG 1 cut(s) 178
FaeI CATG 3 cut(s) 248, 310, 341
FaiI YATR 9 cut(s) 19, 21, 223, 225, 246, 269, 308, 339, 368
FatI CATG 3 cut(s) 244, 306, 337
FauNDI CATATG 1 cut(s) 223
Fnu4HI GCNGC 2 cut(s) 132, 203
FokI GGATG 1 cut(s) 331
Fsp4HI GCNGC 2 cut(s) 132, 203
GluI GCNGC 2 cut(s) 132, 203
GsuI CTGGAG 1 cut(s) 120
HaeIII GGCC 1 cut(s) 215
HapII CCGG 1 cut(s) 316
Hin1II CATG 3 cut(s) 248, 310, 341
HindIII AAGCTT 2 cut(s) 168, 342
HinfI GANTC 3 cut(s) 4, 80, 113
HpaII CCGG 1 cut(s) 316
HphI GGTGA 1 cut(s) 89
Hpy188I TCNGA 2 cut(s) 48, 325
HpyAV CCTTC 1 cut(s) 368
HpyCH4III ACNGT 1 cut(s) 44
HpyCH4IV ACGT 1 cut(s) 141
HpyCH4V TGCA 4 cut(s) 32, 91, 253, 276
HpyF3I CTNAG 1 cut(s) 115
HpySE526I ACGT 1 cut(s) 141
Hsp92II CATG 3 cut(s) 248, 310, 341
LpnPI CCDG 8 cut(s) 21, 84, 121, 148, 191, 286, 329, 361
Lsp1109I GCAGC 2 cut(s) 118, 189
MaeII ACGT 1 cut(s) 141
MaeIII GTNAC 2 cut(s) 120, 159
MboII GAAGA 1 cut(s) 347
MfeI CAATTG 1 cut(s) 27
MluCI AATT 1 cut(s) 27
MlyI GAGTC 1 cut(s) 107
MnlI CCTC 2 cut(s) 205, 363
MseI TTAA 2 cut(s) 144, 240
MspI CCGG 1 cut(s) 316
MspR9I CCNGG 1 cut(s) 136
MunI CAATTG 1 cut(s) 27
MvaI CCWGG 1 cut(s) 136
NdeI CATATG 1 cut(s) 223
NlaIII CATG 3 cut(s) 248, 310, 341
PfeI GAWTC 2 cut(s) 4, 80
PkrI GCNGC 2 cut(s) 133, 204
PleI GAGTC 1 cut(s) 107
PpsI GAGTC 1 cut(s) 107
Psp1406I AACGTT 1 cut(s) 141
Psp6I CCWGG 1 cut(s) 134
PspGI CCWGG 1 cut(s) 134
PstI CTGCAG 1 cut(s) 278
RsaI GTAC 2 cut(s) 235, 305
RsaNI GTAC 2 cut(s) 234, 304
SaqAI TTAA 2 cut(s) 144, 240
SatI GCNGC 2 cut(s) 132, 203
SchI GAGTC 1 cut(s) 107
ScrFI CCNGG 1 cut(s) 136
SetI ASST 5 cut(s) 129, 144, 172, 204, 346
SfcI CTRYAG 2 cut(s) 274, 366
Sse9I AATT 1 cut(s) 27
StyD4I CCNGG 1 cut(s) 134
StyI CCWWGG 1 cut(s) 178
TaaI ACNGT 1 cut(s) 44
TaiI ACGT 1 cut(s) 144
TaqI TCGA 1 cut(s) 387
TasI AATT 1 cut(s) 27
TatI WGTACW 1 cut(s) 303
TfiI GAWTC 2 cut(s) 4, 80
Tru1I TTAA 2 cut(s) 144, 240
Tru9I TTAA 2 cut(s) 144, 240
TscAI CASTG 1 cut(s) 123
TseI GCWGC 2 cut(s) 131, 202
TspDTI ATGAA 4 cut(s) 36, 261, 347, 354
TspGWI ACGGA 1 cut(s) 147
TspRI CASTG 1 cut(s) 123
XcmI CCANNNNNNNNNTGG 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.