RchiOBHm_Chr2g0139991

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001058
Physical Location & Seq
Forward (+)
57366133 .. 57366987
855 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51047

Sequence Viewer

Length: 465 bp
ATGGTCTTTGCAATATGCAACACAGCAGCACTTTTCATATCTATGTGCATTGTCATTGTCTTGGTCAGCAGCATTCCCTTCCGACGAAAACCACTAATGAAACTACTGGTGGTTGCTCACAAAGTAATGTGGGTGGCGGTGTCACTAATGGCCACAGCTTATGTCGCAGCCATGTGGATGATCATGCCACACGGTGAAGGTGTAAATTGGACCCTTGAAGTAGAGATATCTGTGTGTGCAGGGCCTATGGGATCTGTTTTTTTATTCCTTGGTGTCACATGGACCAGACACTGGTTGATGAAGTTCAAGTGGGGGAAGCAGAGAGGTAAAACTACAGAGGAAAGAGCACATAAACAAGCTGTACGAGCACAGAAAAGAACAGAGGATACACCAGAAAACAACTCATCATTATCCACCAACTTCATTGCTTGGAGTTTCGAAGAACTAGGATATCATACGTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 Ank_4 Ank_5 PGG

Protein Analysis

154

Amino Acids

17.54

Weight (kDa)

9.47

Isoelectric Point (pI)

25.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 2 - 60 1.3e-09 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 291
AciI CCGC 1 cut(s) 137
AclWI GGATC 1 cut(s) 259
AcoI YGGCCR 1 cut(s) 150
AdeI CACNNNGTG 1 cut(s) 194
AfaI GTAC 2 cut(s) 363, 461
AfiI CCNNNNNNNGG 1 cut(s) 291
AgsI TTSAA 2 cut(s) 218, 307
AluBI AGCT 2 cut(s) 158, 359
AluI AGCT 2 cut(s) 158, 359
Alw21I GWGCWC 2 cut(s) 349, 370
AlwI GGATC 1 cut(s) 259
AlwNI CAGNNNCTG 1 cut(s) 291
AoxI GGCC 2 cut(s) 150, 242
ApeKI GCWGC 3 cut(s) 26, 69, 167
AspS9I GGNCC 3 cut(s) 210, 242, 282
AsuHPI GGTGA 1 cut(s) 206
AsuII TTCGAA 1 cut(s) 438
AvaII GGWCC 2 cut(s) 210, 282
BalI TGGCCA 1 cut(s) 152
Bbv12I GWGCWC 2 cut(s) 349, 370
BbvI GCAGC 3 cut(s) 38, 81, 179
BciVI GTATCC 1 cut(s) 379
BclI TGATCA 1 cut(s) 180
BfaI CTAG 1 cut(s) 446
BfmI CTRYAG 1 cut(s) 333
BfuI GTATCC 1 cut(s) 379
BisI GCNGC 3 cut(s) 27, 70, 168
BlsI GCNGC 3 cut(s) 28, 71, 169
Bme18I GGWCC 2 cut(s) 210, 282
BmgT120I GGNCC 3 cut(s) 210, 242, 282
BmiI GGNNCC 1 cut(s) 212
Bpu14I TTCGAA 1 cut(s) 438
BsaAI YACGTR 1 cut(s) 459
BsaJI CCNNGG 1 cut(s) 268
Bsc4I CCNNNNNNNGG 1 cut(s) 291
Bse1I ACTGG 2 cut(s) 111, 296
Bse3DI GCAATG 1 cut(s) 423
BseDI CCNNGG 1 cut(s) 268
BseGI GGATG 1 cut(s) 183
BseLI CCNNNNNNNGG 1 cut(s) 291
BseMI GCAATG 1 cut(s) 423
BseNI ACTGG 2 cut(s) 111, 296
BseXI GCAGC 3 cut(s) 38, 81, 179
BsgI GTGCAG 1 cut(s) 258
BshFI GGCC 2 cut(s) 152, 244
BsiHKAI GWGCWC 2 cut(s) 349, 370
BslI CCNNNNNNNGG 1 cut(s) 291
BsmI GAATGC 1 cut(s) 72
BsnI GGCC 2 cut(s) 152, 244
Bsp119I TTCGAA 1 cut(s) 438
Bsp1286I GDGCHC 2 cut(s) 349, 370
Bsp143I GATC 2 cut(s) 180, 251
BspACI CCGC 1 cut(s) 137
BspANI GGCC 2 cut(s) 152, 244
BspLI GGNNCC 1 cut(s) 212
BspPI GGATC 1 cut(s) 259
BspT104I TTCGAA 1 cut(s) 438
BsrDI GCAATG 1 cut(s) 423
BsrI ACTGG 2 cut(s) 111, 296
BssECI CCNNGG 1 cut(s) 268
BssMI GATC 2 cut(s) 180, 251
BssT1I CCWWGG 1 cut(s) 268
Bst4CI ACNGT 1 cut(s) 194
BstBAI YACGTR 1 cut(s) 459
BstBI TTCGAA 1 cut(s) 438
BstF5I GGATG 1 cut(s) 183
BstKTI GATC 2 cut(s) 183, 254
BstMBI GATC 2 cut(s) 180, 251
BstMWI GCNNNNNNNGC 2 cut(s) 164, 365
BstSFI CTRYAG 1 cut(s) 333
BstSNI TACGTA 1 cut(s) 459
BstV1I GCAGC 3 cut(s) 38, 81, 179
BstX2I RGATCY 1 cut(s) 251
BstYI RGATCY 1 cut(s) 251
BsuI GTATCC 1 cut(s) 379
BsuRI GGCC 2 cut(s) 152, 244
BtsCI GGATG 1 cut(s) 183
BtsIMutI CAGTG 1 cut(s) 289
CaiI CAGNNNCTG 1 cut(s) 291
Cfr13I GGNCC 3 cut(s) 210, 242, 282
Csp6I GTAC 2 cut(s) 362, 460
CviAII CATG 3 cut(s) 172, 184, 279
CviJI RGCY 5 cut(s) 152, 158, 170, 244, 359
CviKI_1 RGCY 5 cut(s) 152, 158, 170, 244, 359
CviQI GTAC 2 cut(s) 362, 460
DpnI GATC 2 cut(s) 182, 253
DpnII GATC 2 cut(s) 180, 251
DraIII CACNNNGTG 1 cut(s) 194
EaeI YGGCCR 1 cut(s) 150
Eco105I TACGTA 1 cut(s) 459
Eco130I CCWWGG 1 cut(s) 268
Eco32I GATATC 2 cut(s) 228, 452
Eco47I GGWCC 2 cut(s) 210, 282
EcoO109I RGGNCCY 1 cut(s) 242
EcoRV GATATC 2 cut(s) 228, 452
EcoT14I CCWWGG 1 cut(s) 268
ErhI CCWWGG 1 cut(s) 268
FaeI CATG 3 cut(s) 175, 187, 282
FatI CATG 3 cut(s) 171, 183, 278
FbaI TGATCA 1 cut(s) 180
Fnu4HI GCNGC 3 cut(s) 27, 70, 168
FokI GGATG 1 cut(s) 190
Fsp4HI GCNGC 3 cut(s) 27, 70, 168
FspBI CTAG 1 cut(s) 446
GluI GCNGC 3 cut(s) 27, 70, 168
HaeIII GGCC 2 cut(s) 152, 244
Hin1II CATG 3 cut(s) 175, 187, 282
HphI GGTGA 1 cut(s) 206
Hpy188I TCNGA 1 cut(s) 83
Hpy99I CGWCG 1 cut(s) 87
HpyAV CCTTC 2 cut(s) 88, 191
HpyCH4III ACNGT 1 cut(s) 194
HpyCH4IV ACGT 1 cut(s) 458
HpyCH4V TGCA 4 cut(s) 11, 18, 48, 239
HpyF10VI GCNNNNNNNGC 2 cut(s) 164, 365
HpySE526I ACGT 1 cut(s) 458
Hsp92II CATG 3 cut(s) 175, 187, 282
Ksp22I TGATCA 1 cut(s) 180
Kzo9I GATC 2 cut(s) 180, 251
LpnPI CCDG 5 cut(s) 92, 225, 277, 298, 405
Lsp1109I GCAGC 3 cut(s) 38, 81, 179
MaeI CTAG 1 cut(s) 446
MaeII ACGT 1 cut(s) 458
MaeIII GTNAC 2 cut(s) 141, 274
MalI GATC 2 cut(s) 182, 253
MboI GATC 2 cut(s) 180, 251
MboII GAAGA 1 cut(s) 452
MflI RGATCY 1 cut(s) 251
MhlI GDGCHC 2 cut(s) 349, 370
MlsI TGGCCA 1 cut(s) 152
MluCI AATT 1 cut(s) 205
MluNI TGGCCA 1 cut(s) 152
MmeI TCCRAC 1 cut(s) 106
MnlI CCTC 3 cut(s) 317, 331, 376
Mox20I TGGCCA 1 cut(s) 152
MscI TGGCCA 1 cut(s) 152
MslI CAYNNNNRTG 2 cut(s) 41, 176
Msp20I TGGCCA 1 cut(s) 152
Mva1269I GAATGC 1 cut(s) 72
MwoI GCNNNNNNNGC 2 cut(s) 164, 365
NdeII GATC 2 cut(s) 180, 251
NlaIII CATG 3 cut(s) 175, 187, 282
NlaIV GGNNCC 1 cut(s) 212
NmuCI GTSAC 2 cut(s) 141, 274
NspV TTCGAA 1 cut(s) 438
PctI GAATGC 1 cut(s) 72
PflMI CCANNNNNTGG 1 cut(s) 291
PkrI GCNGC 3 cut(s) 28, 71, 169
Ppu21I YACGTR 1 cut(s) 459
PspN4I GGNNCC 1 cut(s) 212
PspPI GGNCC 3 cut(s) 210, 242, 282
PsrI GAACNNNNNNTAC 2 cut(s) 370, 402
PstNI CAGNNNCTG 1 cut(s) 291
PsuI RGATCY 1 cut(s) 251
RsaI GTAC 2 cut(s) 363, 461
RsaNI GTAC 2 cut(s) 362, 460
RseI CAYNNNNRTG 2 cut(s) 41, 176
SatI GCNGC 3 cut(s) 27, 70, 168
Sau3AI GATC 2 cut(s) 180, 251
Sau96I GGNCC 3 cut(s) 210, 242, 282
SduI GDGCHC 2 cut(s) 349, 370
SetI ASST 5 cut(s) 160, 202, 328, 361, 461
SfcI CTRYAG 1 cut(s) 333
SfuI TTCGAA 1 cut(s) 438
SinI GGWCC 2 cut(s) 210, 282
SmiMI CAYNNNNRTG 2 cut(s) 41, 176
SnaBI TACGTA 1 cut(s) 459
Sse9I AATT 1 cut(s) 205
SsiI CCGC 1 cut(s) 137
SspMI CTAG 1 cut(s) 446
StyI CCWWGG 1 cut(s) 268
TaaI ACNGT 1 cut(s) 194
TaiI ACGT 1 cut(s) 461
TaqI TCGA 1 cut(s) 438
TasI AATT 1 cut(s) 205
TscAI CASTG 1 cut(s) 296
TseFI GTSAC 2 cut(s) 141, 274
TseI GCWGC 3 cut(s) 26, 69, 167
Tsp45I GTSAC 2 cut(s) 141, 274
TspDTI ATGAA 4 cut(s) 25, 113, 314, 412
TspRI CASTG 1 cut(s) 296
Van91I CCANNNNNTGG 1 cut(s) 291
VpaK11BI GGWCC 2 cut(s) 210, 282
XspI CTAG 1 cut(s) 446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.